Guide to the Human Genome
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Name: LRRC50 Sequence: fasta or formatted (725aa) NCBI GI: 157674358
Description:

leucine rich repeat containing 50

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         49           2
 C cysteine            2.1         15           1
 D aspartate           7.4         54           3
 E glutamate          12.1         88           2
 F phenylalanine       2.1         15           1
 G glycine             6.2         45           2
 H histidine           1.7         12           1
 I isoleucine          3.4         25           1
 K lysine              5.7         41           2
 L leucine            10.5         76           3
 M methionine          1.5         11           1
 N asparagine          3.0         22           2
 P proline             9.4         68           6
 Q glutamine           4.1         30           2
 R arginine            5.4         39           2
 S serine              6.8         49           2
 T threonine           6.1         44           1
 V valine              4.0         29           1
 W tryptophan          0.6          4           1
 Y tyrosine            1.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 50 
LRRC49                0.046   leucine rich repeat containing 49 
PPP1R7                0.044   protein phosphatase 1, regulatory subunit 7 
CEP110                0.040   centrosomal protein 110kDa 
LRRC48                0.038   leucine rich repeat containing 48 isoform b 
LRRC48                0.038   leucine rich repeat containing 48 isoform b 
LRRC48                0.038   leucine rich repeat containing 48 isoform a 
LRRC48                0.038   leucine rich repeat containing 48 isoform a 
LRRC67                0.035   leucine rich repeat containing 67 
LRRC46                0.035   leucine rich repeat containing 46 
LRGUK                 0.032   leucine-rich repeats and guanylate kinase domain con...
LRRC6                 0.031   leucine rich repeat containing 6 
LOC654258             0.029   PREDICTED: similar to leucine rich repeat containin...
LRRCC1                0.029   sodium channel associated protein 2 isoform a [Homo...
OGFR                  0.024   opioid growth factor receptor 
RABGGTA               0.024   Rab geranylgeranyltransferase alpha 
RABGGTA               0.024   Rab geranylgeranyltransferase alpha 
ANP32A                0.024   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
FLII                  0.022   flightless I homolog 
ANP32B                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
CEP97                 0.022   centrosomal protein 97kDa 
ANP32E                0.021   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ENAH                  0.021   enabled homolog isoform a 
ENAH                  0.021   enabled homolog isoform b 
SMTNL1                0.020   smoothelin-like 1 
RP1L1                 0.020   retinitis pigmentosa 1-like 1 
EIF5B                 0.020   eukaryotic translation initiation factor 5B 
NEFH                  0.019   neurofilament, heavy polypeptide 200kDa 
DNAL1                 0.019   axonemal dynein light chain 1 
SHOC2                 0.019   soc-2 suppressor of clear homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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