Guide to the Human Genome
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Name: TFDP1 Sequence: fasta or formatted (410aa) NCBI GI: 6005900
Description:

transcription factor Dp-1

Referenced in:

E2F Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         29           2
 C cysteine            1.2          5           1
 D aspartate           5.6         23           3
 E glutamate           7.1         29           2
 F phenylalanine       3.4         14           1
 G glycine             6.6         27           2
 H histidine           2.0          8           1
 I isoleucine          5.1         21           2
 K lysine              6.3         26           2
 L leucine             7.1         29           2
 M methionine          2.2          9           1
 N asparagine          7.1         29           1
 P proline             4.9         20           4
 Q glutamine           5.9         24           2
 R arginine            4.6         19           3
 S serine              9.3         38           2
 T threonine           5.1         21           2
 V valine              7.3         30           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor Dp-1 
TFDP3                 0.695   transcription factor Dp family, member 3 
TFDP2                 0.522   transcription factor Dp-2 (E2F dimerization partner 2...
E2F4                  0.020   E2F transcription factor 4 
E2F3                  0.019   E2F transcription factor 3 
E2F1                  0.019   E2F transcription factor 1 
GCOM1                 0.018   GRINL1A combined protein isoform 2 
GCOM1                 0.018   GRINL1A combined protein isoform 1 
GCOM1                 0.018   GRINL1A combined protein isoform 8 
GCOM1                 0.018   GRINL1A upstream protein isoform 7 
E2F5                  0.015   E2F transcription factor 5 isoform 2 
E2F5                  0.015   E2F transcription factor 5 isoform 1 
MLL3                  0.013   myeloid/lymphoid or mixed-lineage leukemia 3 
E2F2                  0.011   E2F transcription factor 2 
E2F7                  0.011   E2F transcription factor 7 
IVL                   0.011   involucrin 
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.011   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
E2F6                  0.010   E2F transcription factor 6 
TAF4B                 0.010   TAF4b RNA polymerase II, TATA box binding protein (...
RBM33                 0.009   RNA binding motif protein 33 
E2F8                  0.009   E2F family member 8 
CEP120                0.009   coiled-coil domain containing 100 
ZNF853                0.009   zinc finger protein 853 
LOC653125             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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