Guide to the Human Genome
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Name: TAF4B Sequence: fasta or formatted (862aa) NCBI GI: 148792970
Description:

TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         76           2
 C cysteine            1.6         14           1
 D aspartate           2.1         18           2
 E glutamate           4.8         41           2
 F phenylalanine       1.4         12           1
 G glycine             5.0         43           2
 H histidine           0.8          7           1
 I isoleucine          4.9         42           2
 K lysine              7.2         62           2
 L leucine            10.4         90           2
 M methionine          1.5         13           1
 N asparagine          3.8         33           1
 P proline             8.2         71           2
 Q glutamine           6.5         56           2
 R arginine            3.2         28           1
 S serine              9.5         82           3
 T threonine          10.2         88           3
 V valine              9.4         81           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TAF4b RNA polymerase II, TATA box binding protein (... 
TAF4                  0.201   TBP-associated factor 4 
MUC17                 0.035   mucin 17 
MUC2                  0.028   mucin 2 precursor 
MUC5B                 0.024   mucin 5, subtype B, tracheobronchial 
BPTF                  0.024   bromodomain PHD finger transcription factor isoform ...
MUC4                  0.023   mucin 4 isoform a 
MUC3A                 0.023   PREDICTED: mucin 3A, intestinal 
HCFC1                 0.023   host cell factor 1 
ATF7IP                0.023   activating transcription factor 7 interacting protei...
C11orf30              0.022   EMSY protein 
LOC100294420          0.022   PREDICTED: similar to mucin 2 
BCORL1                0.021   BCL6 co-repressor-like 1 
MUC5AC                0.020   mucin 5AC 
LOC100131514          0.020   PREDICTED: similar to hCG1747327, partial 
LOC100133790          0.020   PREDICTED: intestinal mucin-like, partial 
MUC6                  0.019   mucin 6, gastric 
NFRKB                 0.018   nuclear factor related to kappaB binding protein is...
NFRKB                 0.018   nuclear factor related to kappaB binding protein iso...
RUNX1T1               0.018   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.018   acute myelogenous leukemia 1 translocation 1 protein ...
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
SPEN                  0.017   spen homolog, transcriptional regulator 
AMOT                  0.017   angiomotin isoform 2 
AMOT                  0.017   angiomotin isoform 1 
RUNX1T1               0.017   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.017   acute myelogenous leukemia 1 translocation 1 protein...
CIC                   0.017   capicua homolog 
SRCAP                 0.017   Snf2-related CBP activator protein 
WNK1                  0.017   WNK lysine deficient protein kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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