Guide to the Human Genome
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Name: GPIHBP1 Sequence: fasta or formatted (184aa) NCBI GI: 30794264
Description:

glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1

Referenced in:

Lipoproteins
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         10           2
 C cysteine            6.0         11           2
 D aspartate           5.4         10           2
 E glutamate           9.8         18           5
 F phenylalanine       0.0          0           0
 G glycine            10.9         20           2
 H histidine           2.2          4           1
 I isoleucine          1.1          2           1
 K lysine              2.2          4           1
 L leucine            11.4         21           3
 M methionine          1.6          3           1
 N asparagine          3.3          6           1
 P proline             5.4         10           2
 Q glutamine           5.4         10           2
 R arginine            6.5         12           2
 S serine              6.5         12           2
 T threonine          10.3         19           2
 V valine              4.3          8           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycosylphosphatidylinositol anchored high density l... 
PSCA                  0.055   prostate stem cell antigen preproprotein 
LY6E                  0.047   lymphocyte antigen 6 complex, locus E 
LY6E                  0.047   lymphocyte antigen 6 complex, locus E 
TTBK1                 0.044   tau tubulin kinase 1 
LMOD3                 0.044   leiomodin 3 (fetal) 
PRDM2                 0.041   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.041   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.041   retinoblastoma protein-binding zinc finger protein i...
ZBTB7C                0.041   zinc finger and BTB domain containing 7C 
ACRV1                 0.041   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.041   acrosomal vesicle protein 1 isoform b precursor [Homo...
NCL                   0.039   nucleolin 
MYST4                 0.039   MYST histone acetyltransferase (monocytic leukemia)...
LOC645490             0.039   PREDICTED: similar to hCG1991922 
SHROOM4               0.036   shroom family member 4 
CALR                  0.036   calreticulin precursor 
MYT1                  0.036   myelin transcription factor 1 
PPARGC1B              0.036   peroxisome proliferator-activated receptor gamma, co...
TAF7L                 0.036   TATA box binding protein-associated factor, RNA poly...
MYT1L                 0.036   myelin transcription factor 1-like 
ANP32E                0.036   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.036   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.036   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
CDC2L2                0.033   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.033   cell division cycle 2-like 2 isoform 1 
FBXO3                 0.033   F-box only protein 3 isoform 1 
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.033   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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