Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IMP5 Sequence: fasta or formatted (684aa) NCBI GI: 38524591
Description:

intramembrane protease 5

Referenced in:

Aspartic Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         66           4
 C cysteine            2.8         19           2
 D aspartate           4.2         29           1
 E glutamate           3.9         27           2
 F phenylalanine       3.9         27           2
 G glycine             7.7         53           3
 H histidine           3.1         21           2
 I isoleucine          3.7         25           2
 K lysine              2.0         14           1
 L leucine            13.5         92           4
 M methionine          3.4         23           1
 N asparagine          1.6         11           1
 P proline             6.9         47           3
 Q glutamine           4.4         30           2
 R arginine            5.0         34           3
 S serine              7.5         51           3
 T threonine           5.4         37           2
 V valine              7.0         48           3
 W tryptophan          1.6         11           1
 Y tyrosine            2.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intramembrane protease 5 
SPPL2B                0.340   signal peptide peptidase-like 2B isoform 2 
SPPL2B                0.337   signal peptide peptidase-like 2B isoform 3 
SPPL2A                0.251   signal peptide peptidase-like 2A 
SPPL3                 0.053   signal peptide peptidase 3 
HM13                  0.033   minor histocompatibility antigen 13 isoform 3 
HM13                  0.033   minor histocompatibility antigen 13 isoform 2 
HM13                  0.032   minor histocompatibility antigen 13 isoform 1 
CCND3                 0.009   cyclin D3 isoform 1 
CCND3                 0.009   cyclin D3 isoform 3 
CCND3                 0.009   cyclin D3 isoform 2 
TFDP3                 0.009   transcription factor Dp family, member 3 
LOC401399             0.008   hypothetical protein LOC401399 
OR56B1                0.008   olfactory receptor, family 56, subfamily B, member 1...
PLEKHG5               0.007   pleckstrin homology domain containing family G membe...
PLEKHG5               0.007   pleckstrin homology domain containing family G memb...
PLEKHG5               0.007   pleckstrin homology domain containing family G memb...
PLEKHG5               0.007   pleckstrin homology domain containing family G memb...
PLEKHG5               0.007   pleckstrin homology domain containing family G memb...
NBEA                  0.007   neurobeachin 
KIF3B                 0.006   kinesin family member 3B 
C2orf78               0.006   hypothetical protein LOC388960 
FAM186A               0.005   family with sequence similarity 186, member A [Homo...
RCOR3                 0.005   REST corepressor 3 isoform a 
RCOR3                 0.005   REST corepressor 3 isoform d 
DUOXA2                0.005   dual oxidase activator 2 
GNAS                  0.005   GNAS complex locus XLas 
SPANXN2               0.005   SPANX-N2 protein 
CCRL2                 0.005   chemokine (C-C motif) receptor-like 2 isoform 2 [Ho...
CCRL2                 0.005   chemokine (C-C motif) receptor-like 2 isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press