Guide to the Human Genome
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Name: ZNF469 Sequence: fasta or formatted (3925aa) NCBI GI: 188536004
Description:

zinc finger protein 469

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3        403           3
 C cysteine            1.9         74           1
 D aspartate           4.2        164           2
 E glutamate           6.6        259           2
 F phenylalanine       2.5        100           2
 G glycine            10.7        419           4
 H histidine           2.7        105           2
 I isoleucine          0.6         25           2
 K lysine              4.0        157           3
 L leucine             8.0        314           3
 M methionine          0.8         33           1
 N asparagine          1.4         55           1
 P proline            15.2        598           3
 Q glutamine           4.6        182           2
 R arginine            6.9        272           4
 S serine              9.9        389           4
 T threonine           5.1        201           2
 V valine              3.1        121           2
 W tryptophan          0.7         26           1
 Y tyrosine            0.7         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 469 
NACA                  0.015   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
COL5A3                0.010   collagen, type V, alpha 3 preproprotein 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
COL3A1                0.010   collagen type III alpha 1 preproprotein 
COL1A1                0.010   alpha 1 type I collagen preproprotein 
COL4A5                0.010   type IV collagen alpha 5 isoform 1 precursor 
COL4A1                0.009   alpha 1 type IV collagen preproprotein 
COL4A5                0.009   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.009   type IV collagen alpha 5 isoform 3 precursor 
BSN                   0.009   bassoon protein 
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
COL2A1                0.009   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.009   collagen, type II, alpha 1 isoform 2 precursor [Hom...
MAP1A                 0.008   microtubule-associated protein 1A 
MLL2                  0.008   myeloid/lymphoid or mixed-lineage leukemia 2 
GLTSCR1               0.008   glioma tumor suppressor candidate region gene 1 [Ho...
COL4A3                0.008   alpha 3 type IV collagen isoform 5 precursor 
COL5A2                0.008   alpha 2 type V collagen preproprotein 
COL4A3                0.008   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.008   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.008   alpha 3 type IV collagen isoform 1 precursor 
COL5A1                0.008   alpha 1 type V collagen preproprotein 
MUC12                 0.008   PREDICTED: mucin 12 
FMN2                  0.008   formin 2 
SRCAP                 0.008   Snf2-related CBP activator protein 
PRG4                  0.008   proteoglycan 4 isoform D 
PRG4                  0.008   proteoglycan 4 isoform C 
PRG4                  0.008   proteoglycan 4 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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