PRG4 10378

Name: PRG4	Sequence: fasta or formatted (1311aa)		NCBI GI: 189181722
Description: proteoglycan 4 isoform C		Referenced in: Bone and Related Tissues Ovary, Uterus and Placenta
Other entries for this name: alt prot [1363aa] proteoglycan 4 isoform B alt prot [1270aa] proteoglycan 4 isoform D alt prot [1404aa] proteoglycan 4 isoform A
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.9 104 3 C cysteine 1.7 22 2 D aspartate 2.8 37 1 E glutamate 7.3 96 2 F phenylalanine 1.7 22 3 G glycine 3.0 39 2 H histidine 0.6 8 1 I isoleucine 2.4 32 3 K lysine 11.4 149 3 L leucine 3.5 46 5 M methionine 1.1 14 1 N asparagine 2.4 32 1 P proline 17.8 234 3 Q glutamine 2.0 26 2 R arginine 3.0 39 4 S serine 5.0 65 2 T threonine 21.1 277 4 V valine 2.9 38 2 W tryptophan 0.5 7 1 Y tyrosine 1.8 24 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteoglycan 4 isoform C PRG4 0.957 proteoglycan 4 isoform D PRG4 0.913 proteoglycan 4 isoform B PRG4 0.913 proteoglycan 4 isoform A MUC2 0.137 mucin 2 precursor NACA 0.102 nascent polypeptide-associated complex alpha subuni... DPCR1 0.081 diffuse panbronchiolitis critical region 1 protein ... LOC100294420 0.075 PREDICTED: similar to mucin 2 LOC100294236 0.073 PREDICTED: similar to diffuse panbronchiolitis crit... MDC1 0.067 mediator of DNA-damage checkpoint 1 MUC17 0.065 mucin 17 TTN 0.065 titin isoform N2-A MUC6 0.063 mucin 6, gastric ZAN 0.062 zonadhesin isoform 3 ZAN 0.062 zonadhesin isoform 6 MUC4 0.058 mucin 4 isoform a LOC284297 0.056 hypothetical protein LOC284297 PCLO 0.056 piccolo isoform 2 PCLO 0.056 piccolo isoform 1 MUC5B 0.055 mucin 5, subtype B, tracheobronchial MUC5AC 0.055 mucin 5AC KIAA0754 0.055 hypothetical protein LOC643314 FLJ22184 0.053 PREDICTED: hypothetical protein FLJ22184 RAPH1 0.053 Ras association and pleckstrin homology domains 1 is... MUC3A 0.051 PREDICTED: mucin 3A, intestinal POLR2A 0.051 DNA-directed RNA polymerase II A NEFH 0.050 neurofilament, heavy polypeptide 200kDa LOC100131514 0.050 PREDICTED: similar to hCG1747327, partial MUC3A 0.048 PREDICTED: mucin 3A, cell surface associated, parti... MUC12 0.047 PREDICTED: mucin 12 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.