Guide to the Human Genome
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Name: MUC12 Sequence: fasta or formatted (5478aa) NCBI GI: 239743293
Description:

PREDICTED: mucin 12

Referenced in:

Mucins

Other entries for this name:
alt prot [2036aa] PREDICTED: mucin 12, cell surface associated
alt prot [1952aa] PREDICTED: mucin 12
alt prot [978aa] PREDICTED: mucin 12
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6        309           2
 C cysteine            0.3         16           1
 D aspartate           2.0        110           2
 E glutamate           6.0        328           2
 F phenylalanine       2.9        159           1
 G glycine             7.1        388           2
 H histidine           4.0        220           1
 I isoleucine          1.4         76           2
 K lysine              1.1         59           1
 L leucine             5.5        299           3
 M methionine          0.7         39           1
 N asparagine          0.7         40           2
 P proline             9.0        494           3
 Q glutamine           1.9        106           2
 R arginine            2.8        153           2
 S serine             22.6       1240           3
 T threonine          21.9       1201           3
 V valine              3.0        163           3
 W tryptophan          0.3         17           1
 Y tyrosine            1.1         61           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: mucin 12 
MUC12                 0.276   PREDICTED: mucin 12, cell surface associated 
MUC12                 0.227   PREDICTED: mucin 12 
MUC12                 0.155   PREDICTED: mucin 12 
LOC100133714          0.151   PREDICTED: similar to Mucin-12, partial 
MUC17                 0.110   mucin 17 
LOC100130716          0.077   PREDICTED: similar to mucin 11 
MUC4                  0.074   mucin 4 isoform a 
MUC16                 0.074   mucin 16 
MUC2                  0.067   mucin 2 precursor 
MUC5B                 0.064   mucin 5, subtype B, tracheobronchial 
LOC100130716          0.058   PREDICTED: similar to Mucin-12 
MUC5AC                0.054   mucin 5AC 
LOC100294501          0.035   PREDICTED: hypothetical protein 
MUC3A                 0.034   PREDICTED: mucin 3A, intestinal 
LOC729792             0.034   PREDICTED: hypothetical protein 
LOC100294136          0.034   PREDICTED: hypothetical protein 
LOC100294091          0.034   PREDICTED: hypothetical protein 
LOC100294238          0.034   PREDICTED: hypothetical protein 
LOC100294204          0.034   PREDICTED: hypothetical protein 
LOC729792             0.034   PREDICTED: hypothetical protein 
LOC100294249          0.034   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.034   PREDICTED: hypothetical protein 
LOC730401             0.034   PREDICTED: hypothetical protein 
MUC3B                 0.027   PREDICTED: mucin 3B, cell surface associated, parti...
MUC6                  0.024   mucin 6, gastric 
LOC100134138          0.020   PREDICTED: similar to mucin, partial 
GPR112                0.019   G-protein coupled receptor 112 
MUC3A                 0.019   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100294236          0.019   PREDICTED: similar to diffuse panbronchiolitis crit...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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