Guide to the Human Genome
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Name: IGFBP6 Sequence: fasta or formatted (240aa) NCBI GI: 11321593
Description:

insulin-like growth factor binding protein 6

Referenced in:

Growth Hormone and Related Hormones

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         20           2
 C cysteine            6.7         16           1
 D aspartate           4.2         10           2
 E glutamate           5.8         14           3
 F phenylalanine       0.4          1           1
 G glycine            12.9         31           2
 H histidine           1.7          4           1
 I isoleucine          0.0          0           0
 K lysine              2.1          5           1
 L leucine             9.6         23           5
 M methionine          1.2          3           1
 N asparagine          2.9          7           1
 P proline            10.8         26           2
 Q glutamine           7.1         17           2
 R arginine            9.2         22           2
 S serine              6.7         16           3
 T threonine           4.2         10           2
 V valine              4.2         10           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   insulin-like growth factor binding protein 6 
IGFBP5                0.256   insulin-like growth factor binding protein 5 
IGFBP3                0.223   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.219   insulin-like growth factor binding protein 3 isoform...
IGFBP4                0.203   insulin-like growth factor binding protein 4 precurs...
IGFBP2                0.184   insulin-like growth factor binding protein 2, 36kDa ...
IGFBP1                0.143   insulin-like growth factor binding protein 1 precurso...
SPOCK2                0.061   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPOCK3                0.055   testican 3 isoform 1 
SPOCK3                0.055   testican 3 isoform 2 
SPOCK1                0.055   sparc/osteonectin, cwcv and kazal-like domains proteo...
TG                    0.051   thyroglobulin 
HTRA1                 0.049   HtrA serine peptidase 1 precursor 
NID2                  0.041   nidogen 2 precursor 
NID1                  0.039   nidogen 1 precursor 
IGFBPL1               0.037   insulin-like growth factor binding protein-like 1 [H...
SMOC2                 0.031   SPARC related modular calcium binding 2 
SMOC1                 0.029   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.029   secreted modular calcium-binding protein 1 isoform 2...
PAIP1                 0.023   poly(A) binding protein interacting protein 1 isofor...
KRTAP5-5              0.020   keratin associated protein 5-5 
IGFBP7                0.020   insulin-like growth factor binding protein 7 
TACSTD2               0.020   tumor-associated calcium signal transducer 2 precur...
REXO1                 0.020   transcription elongation factor B polypeptide 3 bin...
EPCAM                 0.018   epithelial cell adhesion molecule precursor 
KRTAP5-2              0.018   keratin associated protein 5-2 
COL25A1               0.016   collagen, type XXV, alpha 1 isoform 1 
COL25A1               0.016   collagen, type XXV, alpha 1 isoform 2 
GLI1                  0.016   GLI family zinc finger 1 isoform 2 
GLI1                  0.016   GLI family zinc finger 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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