Guide to the Human Genome
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Name: NID2 Sequence: fasta or formatted (1375aa) NCBI GI: 144953895
Description:

nidogen 2 precursor

Referenced in:

Epidermal Growth Factor
Lipoproteins
Extracellular Matrix

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         92           3
 C cysteine            3.6         49           2
 D aspartate           6.4         88           2
 E glutamate           6.2         85           3
 F phenylalanine       3.6         50           1
 G glycine             8.7        119           2
 H histidine           3.9         53           2
 I isoleucine          3.6         49           2
 K lysine              2.2         30           2
 L leucine             7.7        106           4
 M methionine          0.6          8           1
 N asparagine          3.8         52           2
 P proline             8.5        117           3
 Q glutamine           3.9         54           3
 R arginine            5.3         73           2
 S serine              7.1         98           2
 T threonine           7.1         98           2
 V valine              5.5         76           2
 W tryptophan          1.2         16           1
 Y tyrosine            4.5         62           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nidogen 2 precursor 
NID1                  0.196   nidogen 1 precursor 
LRP5                  0.053   low density lipoprotein receptor-related protein 5 ...
LRP6                  0.052   low density lipoprotein receptor-related protein 6 ...
LRP4                  0.051   low density lipoprotein receptor-related protein 4 ...
LRP1                  0.045   low density lipoprotein-related protein 1 
LRP1B                 0.042   low density lipoprotein-related protein 1B precursor...
HMCN1                 0.042   hemicentin 1 
LRP8                  0.042   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.042   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.042   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.042   low density lipoprotein receptor-related protein 8 i...
EGF                   0.041   epidermal growth factor (beta-urogastrone) 
VLDLR                 0.037   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.037   very low density lipoprotein receptor isoform a [Hom...
LDLR                  0.036   low density lipoprotein receptor precursor 
LRP5L                 0.035   low density lipoprotein receptor-related protein 5-l...
LRP5L                 0.035   low density lipoprotein receptor-related protein 5-...
LRP2                  0.035   low density lipoprotein-related protein 2 
SORL1                 0.034   sortilin-related receptor containing LDLR class A rep...
HMCN2                 0.033   PREDICTED: hemicentin 2 
HMCN2                 0.033   PREDICTED: hemicentin 2 
HMCN2                 0.033   PREDICTED: hemicentin 2 
FBN3                  0.032   fibrillin 3 precursor 
FBLN2                 0.032   fibulin 2 isoform b precursor 
FBLN2                 0.032   fibulin 2 isoform a precursor 
FBN2                  0.032   fibrillin 2 precursor 
LTBP3                 0.031   latent transforming growth factor beta binding prot...
LTBP3                 0.031   latent transforming growth factor beta binding prote...
FBN1                  0.031   fibrillin 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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