Guide to the Human Genome
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Name: SPOCK2 Sequence: fasta or formatted (424aa) NCBI GI: 7662036
Description:

sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 isoform 2

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [77aa] sparc/osteonectin, cwcv and kazal-like domains proteoglycan (test...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         33           4
 C cysteine            5.9         25           1
 D aspartate           8.5         36           2
 E glutamate           9.2         39           4
 F phenylalanine       2.8         12           2
 G glycine             9.0         38           2
 H histidine           1.9          8           1
 I isoleucine          3.8         16           1
 K lysine              7.1         30           3
 L leucine             7.8         33           4
 M methionine          1.4          6           1
 N asparagine          1.9          8           1
 P proline             4.0         17           2
 Q glutamine           5.2         22           2
 R arginine            4.0         17           1
 S serine              7.8         33           2
 T threonine           4.2         18           2
 V valine              3.3         14           1
 W tryptophan          2.4         10           1
 Y tyrosine            2.1          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sparc/osteonectin, cwcv and kazal-like domains proteo... 
SPOCK3                0.446   testican 3 isoform 2 
SPOCK3                0.433   testican 3 isoform 1 
SPOCK1                0.401   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPOCK2                0.124   sparc/osteonectin, cwcv and kazal-like domains prot...
SPARCL1               0.041   SPARC-like 1 
SPARCL1               0.041   SPARC-like 1 
NID1                  0.040   nidogen 1 precursor 
CD74                  0.036   CD74 antigen isoform a 
SMOC2                 0.036   SPARC related modular calcium binding 2 
SPARC                 0.034   secreted protein, acidic, cysteine-rich 
IGFBP6                0.034   insulin-like growth factor binding protein 6 
SMOC1                 0.032   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.032   secreted modular calcium-binding protein 1 isoform 2...
IGFBP3                0.031   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.031   insulin-like growth factor binding protein 3 isoform...
TG                    0.031   thyroglobulin 
NID2                  0.030   nidogen 2 precursor 
IGFBP5                0.027   insulin-like growth factor binding protein 5 
AGRN                  0.027   agrin 
FSTL1                 0.025   follistatin-like 1 precursor 
IGFBP1                0.021   insulin-like growth factor binding protein 1 precurso...
FST                   0.021   follistatin isoform FST317 precursor 
FST                   0.021   follistatin isoform FST344 precursor 
IGFBP2                0.019   insulin-like growth factor binding protein 2, 36kDa ...
TACSTD2               0.019   tumor-associated calcium signal transducer 2 precur...
KAZALD1               0.019   Kazal-type serine peptidase inhibitor domain 1 precu...
TMEFF1                0.018   transmembrane protein with EGF-like and two follista...
EPCAM                 0.018   epithelial cell adhesion molecule precursor 
IGFBP4                0.016   insulin-like growth factor binding protein 4 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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