Guide to the Human Genome
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Name: TACSTD2 Sequence: fasta or formatted (323aa) NCBI GI: 166795236
Description:

tumor-associated calcium signal transducer 2 precursor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         27           2
 C cysteine            3.7         12           1
 D aspartate           6.2         20           1
 E glutamate           5.0         16           1
 F phenylalanine       2.2          7           1
 G glycine             7.4         24           2
 H histidine           2.5          8           2
 I isoleucine          3.7         12           1
 K lysine              5.3         17           2
 L leucine            12.1         39           4
 M methionine          1.9          6           1
 N asparagine          2.8          9           1
 P proline             5.9         19           3
 Q glutamine           3.1         10           1
 R arginine            9.3         30           2
 S serine              4.6         15           1
 T threonine           5.3         17           1
 V valine              8.0         26           5
 W tryptophan          0.3          1           1
 Y tyrosine            2.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor-associated calcium signal transducer 2 precur... 
EPCAM                 0.431   epithelial cell adhesion molecule precursor 
SPOCK2                0.027   sparc/osteonectin, cwcv and kazal-like domains proteo...
NID1                  0.022   nidogen 1 precursor 
SPOCK1                0.019   sparc/osteonectin, cwcv and kazal-like domains proteo...
LAMB3                 0.017   laminin, beta 3 precursor 
LAMB3                 0.017   laminin, beta 3 precursor 
LAMB3                 0.017   laminin, beta 3 precursor 
IGFBP5                0.017   insulin-like growth factor binding protein 5 
SMOC1                 0.016   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.016   secreted modular calcium-binding protein 1 isoform 2...
IGFBP3                0.016   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.016   insulin-like growth factor binding protein 3 isoform...
IGFBP6                0.016   insulin-like growth factor binding protein 6 
SPOCK3                0.014   testican 3 isoform 1 
SPOCK3                0.014   testican 3 isoform 2 
THSD7A                0.013   thrombospondin, type I, domain containing 7A 
METRNL                0.013   meteorin, glial cell differentiation regulator-like ...
TG                    0.013   thyroglobulin 
SMOC2                 0.013   SPARC related modular calcium binding 2 
IGFBP2                0.013   insulin-like growth factor binding protein 2, 36kDa ...
NID2                  0.013   nidogen 2 precursor 
ITGB5                 0.011   integrin, beta 5 
ITGB6                 0.011   integrin, beta 6 
RGMB                  0.010   RGM domain family, member B 
LAMB2                 0.010   laminin, beta 2 precursor 
UMODL1                0.010   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.010   uromodulin-like 1 isoform 2 precursor 
IGFBP4                0.010   insulin-like growth factor binding protein 4 precurs...
LOC652614             0.010   PREDICTED: similar to MHC class I antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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