Guide to the Human Genome
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Name: GLI1 Sequence: fasta or formatted (1106aa) NCBI GI: 4885279
Description:

GLI family zinc finger 1 isoform 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [978aa] GLI family zinc finger 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         65           3
 C cysteine            2.8         31           2
 D aspartate           3.5         39           1
 E glutamate           5.7         63           2
 F phenylalanine       2.2         24           1
 G glycine            10.6        117           3
 H histidine           3.6         40           2
 I isoleucine          1.5         17           1
 K lysine              3.0         33           2
 L leucine             8.0         89           2
 M methionine          1.9         21           1
 N asparagine          3.2         35           1
 P proline            13.5        149           3
 Q glutamine           4.3         48           2
 R arginine            6.0         66           2
 S serine             11.6        128           6
 T threonine           5.2         58           2
 V valine              4.0         44           2
 W tryptophan          0.5          5           1
 Y tyrosine            3.1         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GLI family zinc finger 1 isoform 1 
GLI1                  0.887   GLI family zinc finger 1 isoform 2 
GLI2                  0.232   GLI-Kruppel family member GLI2 
GLI3                  0.212   GLI-Kruppel family member GLI3 
GLIS3                 0.103   GLIS family zinc finger 3 isoform a 
GLIS3                 0.103   GLIS family zinc finger 3 isoform b 
GLIS1                 0.088   GLIS family zinc finger 1 
GLIS2                 0.075   GLIS family zinc finger 2 
ZIC4                  0.066   zinc finger protein of the cerebellum 4 
ZIC5                  0.066   zinc finger protein of the cerebellum 5 
ZIC2                  0.065   zinc finger protein of the cerebellum 2 
ZIC3                  0.065   zinc finger protein of the cerebellum 3 
ZIC1                  0.064   zinc finger protein of the cerebellum 1 
ZNF143                0.045   zinc finger protein 143 
MTF1                  0.041   metal-regulatory transcription factor 1 
ZNF76                 0.040   zinc finger protein 76 (expressed in testis) 
ZNF410                0.039   zinc finger protein 410 
ZXDB                  0.037   zinc finger, X-linked, duplicated B 
ZXDA                  0.037   zinc finger, X-linked, duplicated A 
WT1                   0.036   Wilms tumor 1 isoform A 
WT1                   0.035   Wilms tumor 1 isoform B 
ZNF782                0.035   zinc finger protein 782 
ZNF502                0.034   zinc finger protein 502 
ZNF502                0.034   zinc finger protein 502 
ZNF502                0.034   zinc finger protein 502 
ZNF502                0.034   zinc finger protein 502 
ZNF260                0.034   zinc finger protein 260 
WT1                   0.033   Wilms tumor 1 isoform C 
ZSCAN20               0.033   zinc finger protein 31 
ZNF774                0.033   zinc finger protein 774 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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