Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IGFBP5 Sequence: fasta or formatted (272aa) NCBI GI: 10834982
Description:

insulin-like growth factor binding protein 5

Referenced in:

Growth Hormone and Related Hormones
Ovary, Uterus and Placenta

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         19           2
 C cysteine            6.6         18           2
 D aspartate           3.3          9           1
 E glutamate           9.9         27           2
 F phenylalanine       2.2          6           1
 G glycine             7.0         19           2
 H histidine           2.9          8           1
 I isoleucine          2.2          6           2
 K lysine              7.7         21           2
 L leucine             8.5         23           4
 M methionine          3.3          9           1
 N asparagine          1.5          4           1
 P proline             7.0         19           2
 Q glutamine           4.0         11           1
 R arginine            8.1         22           2
 S serine              6.6         18           2
 T threonine           3.7         10           2
 V valine              5.1         14           1
 W tryptophan          0.4          1           1
 Y tyrosine            2.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   insulin-like growth factor binding protein 5 
IGFBP3                0.382   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.378   insulin-like growth factor binding protein 3 isoform...
IGFBP4                0.283   insulin-like growth factor binding protein 4 precurs...
IGFBP6                0.229   insulin-like growth factor binding protein 6 
IGFBP2                0.214   insulin-like growth factor binding protein 2, 36kDa ...
IGFBP1                0.197   insulin-like growth factor binding protein 1 precurso...
HTRA1                 0.051   HtrA serine peptidase 1 precursor 
IGFBP7                0.049   insulin-like growth factor binding protein 7 
SPOCK1                0.048   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPOCK3                0.044   testican 3 isoform 1 
SPOCK3                0.044   testican 3 isoform 2 
SPOCK2                0.044   sparc/osteonectin, cwcv and kazal-like domains proteo...
ESM1                  0.038   endothelial cell-specific molecule 1 isoform a precur...
ESM1                  0.038   endothelial cell-specific molecule 1 isoform b prec...
CRIM1                 0.037   cysteine-rich motor neuron 1 
NID1                  0.035   nidogen 1 precursor 
TG                    0.033   thyroglobulin 
IGFBPL1               0.031   insulin-like growth factor binding protein-like 1 [H...
NID2                  0.026   nidogen 2 precursor 
SMOC1                 0.026   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.026   secreted modular calcium-binding protein 1 isoform 2...
WISP2                 0.024   WNT1 inducible signaling pathway protein 2 precursor ...
CTGF                  0.024   connective tissue growth factor 
HTRA3                 0.024   HtrA serine peptidase 3 
EPCAM                 0.022   epithelial cell adhesion molecule precursor 
NOV                   0.020   nephroblastoma overexpressed precursor 
HTRA4                 0.020   HtrA serine peptidase 4 precursor 
SMOC2                 0.020   SPARC related modular calcium binding 2 
TACSTD2               0.020   tumor-associated calcium signal transducer 2 precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press