Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KRTAP5-5 Sequence: fasta or formatted (237aa) NCBI GI: 122891874
Description:

keratin associated protein 5-5

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.3          3           1
 C cysteine           31.2         74           3
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.4          1           1
 G glycine            28.7         68           2
 H histidine           0.0          0           0
 I isoleucine          0.4          1           1
 K lysine              5.9         14           1
 L leucine             0.0          0           0
 M methionine          0.8          2           1
 N asparagine          0.0          0           0
 P proline             3.8          9           1
 Q glutamine           3.0          7           1
 R arginine            0.8          2           1
 S serine             19.0         45           2
 T threonine           0.0          0           0
 V valine              3.0          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 5-5 
KRTAP5-4              0.773   keratin associated protein 5-4 
KRTAP5-10             0.685   keratin associated protein 5-10 
KRTAP5-3              0.619   keratin associated protein 5-3 
KRTAP5-1              0.607   keratin associated protein 5-1 
KRTAP5-2              0.573   keratin associated protein 5-2 
KRTAP5-7              0.529   keratin associated protein 5-7 
KRTAP5-8              0.522   keratin associated protein 5-8 
KRTAP5-11             0.427   keratin associated protein 5-11 
KRTAP5-9              0.379   keratin associated protein 5-9 
KRTAP5-6              0.373   keratin associated protein 5-6 
KRTAP4-8              0.221   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.221   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-3              0.218   keratin associated protein 4-3 
KRTAP4-8              0.214   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.214   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.209   keratin associated protein 4-9 
KRTAP10-4             0.209   keratin associated protein 10-4 
KRTAP4-11             0.207   keratin associated protein 4-11 
KRTAP4-9              0.207   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.204   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.204   PREDICTED: similar to keratin associated protein 4-...
KRTAP10-7             0.202   keratin associated protein 10-7 
KRTAP4-12             0.202   keratin associated protein 4-12 
KRTAP4-9              0.200   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-8              0.200   PREDICTED: keratin associated protein 4-8 
KRTAP10-6             0.198   keratin associated protein 10-6 
KRTAP4-8              0.195   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.195   keratin associated protein 4.8 
KRTAP10-2             0.191   keratin associated protein 10-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press