Guide to the Human Genome
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Name: SMOC1 Sequence: fasta or formatted (434aa) NCBI GI: 11545873
Description:

secreted modular calcium-binding protein 1 isoform 2

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [435aa] secreted modular calcium-binding protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         23           2
 C cysteine            5.3         23           1
 D aspartate           6.2         27           2
 E glutamate           6.0         26           2
 F phenylalanine       2.3         10           1
 G glycine             6.9         30           3
 H histidine           2.1          9           1
 I isoleucine          3.0         13           1
 K lysine              7.6         33           3
 L leucine             7.4         32           3
 M methionine          1.6          7           1
 N asparagine          3.0         13           2
 P proline             7.8         34           1
 Q glutamine           4.8         21           2
 R arginine            6.7         29           2
 S serine              7.8         34           2
 T threonine           6.7         29           2
 V valine              6.0         26           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secreted modular calcium-binding protein 1 isoform 2... 
SMOC1                 0.995   secreted modular calcium-binding protein 1 isoform 1...
SMOC2                 0.514   SPARC related modular calcium binding 2 
NID2                  0.065   nidogen 2 precursor 
TG                    0.056   thyroglobulin 
NID1                  0.045   nidogen 1 precursor 
TMEFF2                0.033   transmembrane protein with EGF-like and two follista...
SPOCK2                0.032   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPOCK1                0.028   sparc/osteonectin, cwcv and kazal-like domains proteo...
AGRN                  0.026   agrin 
SPOCK3                0.025   testican 3 isoform 1 
SPOCK3                0.025   testican 3 isoform 2 
SPARC                 0.024   secreted protein, acidic, cysteine-rich 
CD74                  0.024   CD74 antigen isoform a 
FSTL3                 0.023   follistatin-like 3 glycoprotein precursor 
FST                   0.023   follistatin isoform FST317 precursor 
FST                   0.023   follistatin isoform FST344 precursor 
SPARCL1               0.023   SPARC-like 1 
SPARCL1               0.023   SPARC-like 1 
TMEFF1                0.023   transmembrane protein with EGF-like and two follista...
IGFBP1                0.021   insulin-like growth factor binding protein 1 precurso...
IGFBP3                0.020   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.020   insulin-like growth factor binding protein 3 isoform...
IGFBP4                0.019   insulin-like growth factor binding protein 4 precurs...
IGFBP2                0.017   insulin-like growth factor binding protein 2, 36kDa ...
IGFBP5                0.016   insulin-like growth factor binding protein 5 
IGFBP6                0.016   insulin-like growth factor binding protein 6 
C6                    0.016   complement component 6 precursor 
C6                    0.016   complement component 6 precursor 
FSTL4                 0.016   follistatin-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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