Guide to the Human Genome
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Name: PAIP1 Sequence: fasta or formatted (479aa) NCBI GI: 17511255
Description:

poly(A) binding protein interacting protein 1 isoform 1

Referenced in:

Polyadenylation

Other entries for this name:
alt prot [400aa] poly(A) binding protein interacting protein 1 isoform 2
alt prot [367aa] poly(A) binding protein interacting protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         32           2
 C cysteine            1.7          8           1
 D aspartate           6.3         30           2
 E glutamate           9.4         45           2
 F phenylalanine       4.0         19           2
 G glycine             7.5         36           4
 H histidine           1.3          6           2
 I isoleucine          2.7         13           2
 K lysine              4.0         19           1
 L leucine             9.4         45           3
 M methionine          2.1         10           1
 N asparagine          4.2         20           1
 P proline             8.6         41           3
 Q glutamine           5.8         28           2
 R arginine            6.1         29           1
 S serine              6.5         31           3
 T threonine           5.0         24           2
 V valine              4.6         22           3
 W tryptophan          0.4          2           1
 Y tyrosine            4.0         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(A) binding protein interacting protein 1 isofor... 
LOC645139             0.918   PREDICTED: similar to poly(A) binding protein inter...
LOC645139             0.913   PREDICTED: similar to poly(A) binding protein inter...
LOC645139             0.913   PREDICTED: similar to poly(A) binding protein intera...
PAIP1                 0.805   poly(A) binding protein interacting protein 1 isofor...
PAIP1                 0.752   poly(A) binding protein interacting protein 1 isofor...
EIF4G1                0.059   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.059   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.059   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.059   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.059   eukaryotic translation initiation factor 4 gamma, 1 ...
KIAA0427              0.052   hypothetical protein LOC9811 isoform 2 
KIAA0427              0.052   hypothetical protein LOC9811 isoform 1 
EIF4G3                0.045   eukaryotic translation initiation factor 4 gamma, 3 ...
LMTK3                 0.029   lemur tyrosine kinase 3 
HCN2                  0.023   hyperpolarization activated cyclic nucleotide-gated...
PABPN1                0.023   poly(A) binding protein, nuclear 1 
PRB1                  0.023   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB2                  0.023   proline-rich protein BstNI subfamily 2 
SFPQ                  0.022   splicing factor proline/glutamine rich (polypyrimidin...
PRB1                  0.022   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB3                  0.022   proline-rich protein BstNI subfamily 3 precursor [H...
PRR12                 0.022   proline rich 12 
FMNL1                 0.021   formin-like 1 
HNRNPUL1              0.021   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.021   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
PRR22                 0.020   proline rich 22 isoform 1 
PRR22                 0.020   proline rich 22 isoform 2 
CPSF6                 0.020   cleavage and polyadenylation specific factor 6, 68 ...
PRB1                  0.020   proline-rich protein BstNI subfamily 1 isoform 1 pre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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