Guide to the Human Genome
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Name: SPOCK1 Sequence: fasta or formatted (439aa) NCBI GI: 4759164
Description:

sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 precursor

Referenced in:

Additional Brain Proteins
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         30           6
 C cysteine            5.7         25           1
 D aspartate           8.4         37           3
 E glutamate           6.2         27           3
 F phenylalanine       3.2         14           1
 G glycine             7.1         31           2
 H histidine           2.5         11           1
 I isoleucine          2.3         10           1
 K lysine              8.4         37           2
 L leucine             8.9         39           3
 M methionine          1.1          5           1
 N asparagine          5.0         22           2
 P proline             5.9         26           2
 Q glutamine           3.9         17           1
 R arginine            4.1         18           1
 S serine              7.1         31           2
 T threonine           3.4         15           1
 V valine              4.6         20           2
 W tryptophan          2.3         10           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sparc/osteonectin, cwcv and kazal-like domains proteo... 
SPOCK3                0.499   testican 3 isoform 1 
SPOCK3                0.493   testican 3 isoform 2 
SPOCK2                0.380   sparc/osteonectin, cwcv and kazal-like domains proteo...
NID1                  0.042   nidogen 1 precursor 
CD74                  0.039   CD74 antigen isoform a 
IGFBP3                0.033   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.033   insulin-like growth factor binding protein 3 isoform...
NID2                  0.032   nidogen 2 precursor 
TG                    0.029   thyroglobulin 
IGFBP6                0.029   insulin-like growth factor binding protein 6 
SPARCL1               0.029   SPARC-like 1 
SPARCL1               0.029   SPARC-like 1 
SMOC2                 0.029   SPARC related modular calcium binding 2 
IGFBP5                0.028   insulin-like growth factor binding protein 5 
SPARC                 0.028   secreted protein, acidic, cysteine-rich 
SMOC1                 0.027   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.027   secreted modular calcium-binding protein 1 isoform 2...
AGRN                  0.024   agrin 
SPOCK2                0.023   sparc/osteonectin, cwcv and kazal-like domains prot...
IGFBP1                0.022   insulin-like growth factor binding protein 1 precurso...
IGFBP4                0.021   insulin-like growth factor binding protein 4 precurs...
EPCAM                 0.020   epithelial cell adhesion molecule precursor 
FST                   0.018   follistatin isoform FST317 precursor 
FST                   0.018   follistatin isoform FST344 precursor 
WFIKKN2               0.018   WFIKKN2 protein 
IGFBP2                0.018   insulin-like growth factor binding protein 2, 36kDa ...
FSTL3                 0.017   follistatin-like 3 glycoprotein precursor 
FSTL1                 0.016   follistatin-like 1 precursor 
IGFBPL1               0.016   insulin-like growth factor binding protein-like 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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