Guide to the Human Genome
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Name: SPOCK3 Sequence: fasta or formatted (433aa) NCBI GI: 93141003
Description:

testican 3 isoform 1

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [436aa] testican 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         25           5
 C cysteine            6.2         27           1
 D aspartate          11.8         51           4
 E glutamate           5.3         23           1
 F phenylalanine       3.5         15           2
 G glycine             6.2         27           2
 H histidine           2.3         10           1
 I isoleucine          3.9         17           1
 K lysine              6.5         28           2
 L leucine             6.7         29           3
 M methionine          1.4          6           1
 N asparagine          3.5         15           2
 P proline             3.9         17           2
 Q glutamine           5.5         24           2
 R arginine            5.3         23           2
 S serine              7.6         33           1
 T threonine           4.2         18           2
 V valine              4.8         21           2
 W tryptophan          2.3         10           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testican 3 isoform 1 
SPOCK3                0.993   testican 3 isoform 2 
SPOCK1                0.506   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPOCK2                0.417   sparc/osteonectin, cwcv and kazal-like domains proteo...
SPARCL1               0.047   SPARC-like 1 
SPARCL1               0.047   SPARC-like 1 
NID1                  0.044   nidogen 1 precursor 
CD74                  0.040   CD74 antigen isoform a 
NID2                  0.039   nidogen 2 precursor 
SPARC                 0.036   secreted protein, acidic, cysteine-rich 
TG                    0.032   thyroglobulin 
IGFBP3                0.030   insulin-like growth factor binding protein 3 isoform...
IGFBP3                0.030   insulin-like growth factor binding protein 3 isoform...
IGFBP6                0.030   insulin-like growth factor binding protein 6 
AGRN                  0.030   agrin 
SPOCK2                0.028   sparc/osteonectin, cwcv and kazal-like domains prot...
IGFBP5                0.026   insulin-like growth factor binding protein 5 
FSTL1                 0.026   follistatin-like 1 precursor 
SMOC2                 0.024   SPARC related modular calcium binding 2 
SMOC1                 0.024   secreted modular calcium-binding protein 1 isoform 1...
SMOC1                 0.024   secreted modular calcium-binding protein 1 isoform 2...
ATAD2                 0.022   ATPase family, AAA domain containing 2 
C19orf2               0.021   RPB5-mediating protein isoform b 
C19orf2               0.021   RPB5-mediating protein isoform a 
MTERFD2               0.021   MTERF domain containing 2 
NCL                   0.021   nucleolin 
FST                   0.021   follistatin isoform FST317 precursor 
FST                   0.021   follistatin isoform FST344 precursor 
IGFBP1                0.020   insulin-like growth factor binding protein 1 precurso...
FSTL4                 0.020   follistatin-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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