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Search of human proteins with 182765480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
(366 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens] 780 0.0
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 46 6e-05
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 45 1e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 43 4e-04
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 43 5e-04
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 43 5e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 42 7e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 42 7e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 41 0.001
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 41 0.001
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 41 0.002
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 41 0.002
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 41 0.002
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 40 0.003
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 40 0.003
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 40 0.003
gi|120587019 zinc finger protein 318 [Homo sapiens] 40 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.003
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.003
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 40 0.003
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 40 0.004
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 40 0.004
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 40 0.004
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 40 0.004
gi|7706501 WW domain binding protein 11 [Homo sapiens] 40 0.004
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 39 0.006
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 39 0.006
>gi|182765480 chromosome 6 open reading frame 186 [Homo sapiens]
Length = 366
Score = 780 bits (2014), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MARERPPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPP 60
MARERPPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPP
Sbjct: 1 MARERPPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPP 60
Query: 61 APGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGS 120
APGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGS
Sbjct: 61 APGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGS 120
Query: 121 AQSLDEEAWRFLRYISTTQIACNHMNTDSLATDSSPTHKPWSVCLDDRFNLAHQIRNKQC 180
AQSLDEEAWRFLRYISTTQIACNHMNTDSLATDSSPTHKPWSVCLDDRFNLAHQIRNKQC
Sbjct: 121 AQSLDEEAWRFLRYISTTQIACNHMNTDSLATDSSPTHKPWSVCLDDRFNLAHQIRNKQC 180
Query: 181 RLYSLGLGSDDTHFEVSMANNGCEVHRFDPSVKSAHILESQHLWYHRLSIDWRDPHPAVA 240
RLYSLGLGSDDTHFEVSMANNGCEVHRFDPSVKSAHILESQHLWYHRLSIDWRDPHPAVA
Sbjct: 181 RLYSLGLGSDDTHFEVSMANNGCEVHRFDPSVKSAHILESQHLWYHRLSIDWRDPHPAVA 240
Query: 241 AQKPHSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLH 300
AQKPHSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLH
Sbjct: 241 AQKPHSNTRKLGSILNEFGHHKIDVLKADLESAEWKVLENLILEDVLEQIGQLIFEIHLH 300
Query: 301 WPGFEVSGSDSSVVRFWYSLLKELEQKDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLSW 360
WPGFEVSGSDSSVVRFWYSLLKELEQKDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLSW
Sbjct: 301 WPGFEVSGSDSSVVRFWYSLLKELEQKDFRLFHSYKDLSKPQLFLKKDIFNASSCYTLSW 360
Query: 361 VNTRWK 366
VNTRWK
Sbjct: 361 VNTRWK 366
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.8 bits (107), Expect = 6e-05
Identities = 31/79 (39%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRS-----GRRAPPGGG--GS 89
GPG P R PGP+ PPGP P PRG T ++ G R PPG G G
Sbjct: 1360 GPGLPGRKGDPGPSG-PPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGI 1418
Query: 90 GTPEPGCCAPRGRPRRKGP 108
EPG G P +GP
Sbjct: 1419 APGEPGLPGLPGSPGPQGP 1437
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
PG P R+ PGP P G P GA R + R+G PG G PG
Sbjct: 1274 PGLPGRTGAPGPQGPPGSATAKGERGFP-GADGRPGSPGRAGNPGTPGAPGL-KGSPGLP 1331
Query: 98 APRGRPRRKGPR 109
PRG P +GPR
Sbjct: 1332 GPRGDPGERGPR 1343
Score = 38.5 bits (88), Expect = 0.010
Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 39 GSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG---GGSGTP- 92
G+P PGP+ GP PP PRG Q + G R PPG G G P
Sbjct: 2704 GTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQG---QKGERGPPGERVVGAPGVPG 2760
Query: 93 EPGCCAPRGRPRRKGPRWHIDLQPWAGSAQSLDEEAWRFLRYISTTQIAC 142
PG +GRP GPR G A +++ F+R + AC
Sbjct: 2761 APGERGEQGRPGPAGPRGE------KGEAALTEDDIRGFVRQEMSQHCAC 2804
Score = 37.0 bits (84), Expect = 0.028
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 38 PGSPTRSAPPGP--AWRPPGPHLPPAPGQP--RGASR-------------RQVTYVRSGR 80
PG+P PPGP + PGP L G P +GA R V ++ R
Sbjct: 2081 PGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDR 2140
Query: 81 RAPPGGGGSGTP----EPGCCAPRGRPRRKGPR 109
P G G P E G P G+P +GPR
Sbjct: 2141 GEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPR 2173
Score = 36.2 bits (82), Expect = 0.048
Identities = 29/78 (37%), Positives = 32/78 (41%), Gaps = 20/78 (25%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP------ 92
G P R PGP PPGP P P GAS G + G G G P
Sbjct: 2428 GPPGREGIPGPLG-PPGP---PGSVGPPGAS---------GLKGDKGDPGVGLPGPRGER 2474
Query: 93 -EPGCCAPRGRPRRKGPR 109
EPG GRP ++GPR
Sbjct: 2475 GEPGIRGEDGRPGQEGPR 2492
Score = 33.9 bits (76), Expect = 0.24
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
R PG P PGP GP P P G + + + + AP G G EP
Sbjct: 2271 RGSPGVPGSPGLPGPV----GPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEP 2326
Query: 95 GCCAPRGRPRRKGPR 109
G RG P +G +
Sbjct: 2327 GAKGDRGLPGPRGEK 2341
Score = 32.7 bits (73), Expect = 0.53
Identities = 34/102 (33%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 6 PPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQP 65
PPGRG L G GL PG P S GP P P G+P
Sbjct: 2214 PPGRG-------LTGPTGAVGL----------PGPPGPSGLVGPQGSPGLPGQVGETGKP 2256
Query: 66 RGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKG 107
GA R + G R PG GS PG P+G P G
Sbjct: 2257 -GAPGRDGASGKDGDRGSPGVPGS-PGLPGPVGPKGEPGPTG 2296
Score = 32.7 bits (73), Expect = 0.53
Identities = 30/87 (34%), Positives = 31/87 (35%), Gaps = 23/87 (26%)
Query: 37 GPGSPTRSAPPGPAWRPPG-------PHLPPAPG--------QPRGASRRQVTYVRSGRR 81
G G P PPG PPG P LP APG PRG + G
Sbjct: 2372 GVGVPGSPGPPG----PPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLA 2427
Query: 82 APPGGGGSGTPEPGCCAPRGRPRRKGP 108
PPG G PG P G P GP
Sbjct: 2428 GPPGREGI----PGPLGPPGPPGSVGP 2450
Score = 32.0 bits (71), Expect = 0.90
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
Query: 37 GPGSPTRSAP-----PGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGT 91
GPG+ + P GP P LP APG+ RG G R PPG G
Sbjct: 1712 GPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGE-RGI---------EGFRGPPGPQG--- 1758
Query: 92 PEPGCCAPRGRPRRKGP 108
+PG P G +GP
Sbjct: 1759 -DPGVRGPAGEKGDRGP 1774
Score = 31.6 bits (70), Expect = 1.2
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 31 AELRRAGPGSPTRSAPPGPAWRP--PG-PHLPPAPG--QPRGASRRQVTYVRSGRRAPP- 84
A+ R PG+ R PG A P PG P L +PG PRG + G P
Sbjct: 1294 AKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPG 1353
Query: 85 ---GGGGSGTP-EPGCCAPRGRPRRKGP 108
GG G G P G P G P +GP
Sbjct: 1354 QVIGGEGPGLPGRKGDPGPSGPPGPRGP 1381
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 37 GP-GSPTRSAPPGPAWRP-----PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG 90
GP G R+ PPG + P PG PP P PRG R G PPG G
Sbjct: 1595 GPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRG---RDGEVGEKGDEGPPGDPGL- 1650
Query: 91 TPEPGCCAPRGRPRRKGP 108
+ G RG P +GP
Sbjct: 1651 PGKAGERGLRGAPGVRGP 1668
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 23/88 (26%)
Query: 38 PGSPTRSAPPGPAWR------PPGPHLP----PAPGQPRG-------ASRRQVTYVRSGR 80
PG+ PPGP R P P P PA P+G A R T V+ G
Sbjct: 1515 PGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQ-GE 1573
Query: 81 RAPPGGGGSGTPEPGCCAPRGRPRRKGP 108
R PP G PG P+G P +GP
Sbjct: 1574 RGPP-----GLVLPGDPGPKGDPGDRGP 1596
Score = 30.4 bits (67), Expect = 2.6
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPG--QPRGASRRQVTYVRSGRRAPPGGGGSG-TPEP 94
PG PPGP P P APG P G G PPG G +G T
Sbjct: 2167 PGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAV 2226
Query: 95 GCCAPRGRPRRKGPR 109
G P G GP+
Sbjct: 2227 GLPGPPGPSGLVGPQ 2241
Score = 29.3 bits (64), Expect = 5.8
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 37 GPGSPTRSA-----PPGP---AWRPPGPHLPPAPGQPRGASR--RQVTYVRSGRRAPPGG 86
GP P A PPGP A P P +P PG+ G R G + G
Sbjct: 2012 GPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGE 2071
Query: 87 GGSGTPEPGCCAPRGRPRRKGPRWHID 113
G P PG G P GP+ +D
Sbjct: 2072 QGRDGP-PGLPGTPGPPGPPGPKVSVD 2097
Score = 28.5 bits (62), Expect = 9.9
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQP--RGASRRQVTYVRSGRRAPPGGGGSGTPE-- 93
PG PGP+ P P P G+P G + GR+ G G+ E
Sbjct: 1811 PGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGR 1870
Query: 94 ---------PGCCAPRGRPRRKGP 108
PG P+G P GP
Sbjct: 1871 DGPKGERGAPGILGPQGPPGLPGP 1894
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 44.7 bits (104), Expect = 1e-04
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRG-----ASRRQVTYVRSGRRAPPG-GG 87
R PG+P PPG P +P PG+ RG + G R PPG G
Sbjct: 1661 RPGSPGAPGEQGPPGTPGFPGNAGVPGTPGE-RGLTGIKGEKGNPGVGTQGPRGPPGPAG 1719
Query: 88 GSGTPEPGCCAPRGRPRRKGPRWHI 112
SG PG P G P +GP H+
Sbjct: 1720 PSGESRPGSPGPPGSPGPRGPPGHL 1744
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/75 (36%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 37 GPGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
G GSP R PG P G PP P P G G PG GS P+
Sbjct: 1540 GVGSPGRDGSPGQRGLPGKDGSSGPPGPPGPIGI---------PGTPGVPGITGSMGPQ- 1589
Query: 95 GCCAPRGRPRRKGPR 109
G P G P KG R
Sbjct: 1590 GALGPPGVPGAKGER 1604
Score = 28.9 bits (63), Expect = 7.6
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 30 CAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQ-----PRGASRRQVTYVRSGRRAPP 84
C +L + S T GPA P GP L GQ P+G + G + PP
Sbjct: 1444 CPDLPHSCSCSETNEVALGPAGPPGGPGLRGPKGQQGEPGPKGPDGPRGEIGLPGPQGPP 1503
Query: 85 G-GGGSGTPEPGCCAPRGRPRRKG 107
G G SG G G KG
Sbjct: 1504 GPQGPSGLSIQGMPGMPGEKGEKG 1527
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 43.1 bits (100), Expect = 4e-04
Identities = 32/90 (35%), Positives = 34/90 (37%), Gaps = 27/90 (30%)
Query: 34 RRAGPGSPTRSAPPGPAWR------------PPGPHLPPAPGQPRGASRRQVTYVRSGRR 81
++ PG P S PPGPA PPG PP P PRGA
Sbjct: 1228 KKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAP------------ 1275
Query: 82 APPGGGGSG---TPEPGCCAPRGRPRRKGP 108
PPG GS EPG C G P GP
Sbjct: 1276 GPPGLPGSVDLLRGEPGDCGLPGPPGPPGP 1305
Score = 40.4 bits (93), Expect = 0.003
Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 35 RAGPGSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP 92
R PGSP S PPGP + PPGP P P GA+ R + PPG G
Sbjct: 1212 RGDPGSPGIS-PPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDP--GPPGDQGP--- 1265
Query: 93 EPGCCAPRGRPRRKGPRWHIDL 114
PG PRG P G +DL
Sbjct: 1266 -PGPDGPRGAPGPPGLPGSVDL 1286
Score = 36.2 bits (82), Expect = 0.048
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQ--PRGASRRQVTYVRSGRRAPPG-GGGSGTPE 93
G G P PPGPA P LP PG P G + G PPG G G P
Sbjct: 853 GKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPG 912
Query: 94 -PGCCAPRGRPRRKG 107
PG RG+P +G
Sbjct: 913 FPGFPGERGKPGAEG 927
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPG--QPRGASRRQ-------VTYVRSGRRAPPG 85
+AGP P PGP P +P PG P G ++ VTY GR PPG
Sbjct: 623 KAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTY--PGRHGPPG 680
Query: 86 GGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGSAQ 122
G P+ G P+G P G H G+A+
Sbjct: 681 FDGPPGPK-GFPGPQGAPGLSGSDGHKGRPGTPGTAE 716
Score = 33.5 bits (75), Expect = 0.31
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG-SGTP---- 92
PG P S G P P LP PG P + + G PPG G G P
Sbjct: 821 PGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKG----QPGDVGPPGPAGMKGLPGLPG 876
Query: 93 EPGCCAPRGRPRRKGP 108
PG P G P GP
Sbjct: 877 RPGAHGPPGLPGIPGP 892
Score = 32.7 bits (73), Expect = 0.53
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQ--PRGASRRQVTYVRSGRRAPPG-GGGSGT 91
R PG+ GP P P L PG P G + +G R PG GG G
Sbjct: 97 RGPPGAAGDKGDKGPTGVPGFPGLDGIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGGRGA 156
Query: 92 PEPGCCAPRGRPRRKGPR 109
PG P G P KG +
Sbjct: 157 LGPG--GPLGHPGEKGEK 172
Score = 32.7 bits (73), Expect = 0.53
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 35 RAGPGSPTRSAPPGPAWRPPG----------PHLPPAPGQPRGASRRQVTYVRSGRRAPP 84
R PG + PPGP PPG P LP G+P + + G R P
Sbjct: 1014 RGEPGEKGQPGPPGPPG-PPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGI-DGARGPK 1071
Query: 85 GGGGSGTPEPGCCAPRGRPRRKGPRWH 111
G G G P+G P G H
Sbjct: 1072 GNKGDPASHFGPPGPKGEPGSPGCPGH 1098
Score = 32.0 bits (71), Expect = 0.90
Identities = 31/83 (37%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 26 GLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG 85
GL +L R PG PPGP PPGP P G P G + G P G
Sbjct: 1279 GLPGSVDLLRGEPGDCGLPGPPGPPG-PPGP--PGYKGFP-GCDGKDGQKGPVGFPGPQG 1334
Query: 86 GGGSGTPEPGCCAPRGRPRRKGP 108
G P PG G P RKGP
Sbjct: 1335 PHGFPGP-PGEKGLPGPPGRKGP 1356
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG-TPEPGC 96
PGS P GP P P L PGQP R G + PG G G +PG
Sbjct: 198 PGSWGAGGPAGPTGYPGEPGLVGPPGQPG----------RPGLKGNPGVGVKGQMGDPGE 247
Query: 97 CAPRGRP 103
+G P
Sbjct: 248 VGQQGSP 254
Score = 30.8 bits (68), Expect = 2.0
Identities = 29/80 (36%), Positives = 31/80 (38%), Gaps = 22/80 (27%)
Query: 37 GP-GSPTRSAPPGPAWRP--PGPH-LPPAPGQPRGASRRQVTYVRSGRRAPPGGGG-SGT 91
GP GSP R PPG + P PG H +P GQP G PG G G
Sbjct: 1112 GPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP-------------GEMGDPGPRGLQGD 1158
Query: 92 P----EPGCCAPRGRPRRKG 107
P PG P G P G
Sbjct: 1159 PGIPGPPGIKGPSGSPGLNG 1178
Score = 30.0 bits (66), Expect = 3.4
Identities = 35/133 (26%), Positives = 42/133 (31%), Gaps = 45/133 (33%)
Query: 33 LRRAGPGSPTRSAPPGPAWRPPGPHLP----------PAPGQP--------------RGA 68
L R G PPGP P P LP APG+P +G
Sbjct: 393 LGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGL 452
Query: 69 SRRQVTYVR---------SGRRAPPGGGG--SGTPEPGCCA----------PRGRPRRKG 107
V Y G+ PPGG G G CA P G P R+G
Sbjct: 453 PGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQG 512
Query: 108 PRWHIDLQPWAGS 120
+ + L W G+
Sbjct: 513 SKGDLGLPGWLGT 525
Score = 28.5 bits (62), Expect = 9.9
Identities = 29/108 (26%), Positives = 35/108 (32%), Gaps = 39/108 (36%)
Query: 39 GSPTRSAPPGPAWRP--------------PGPHLPPAPGQPRGASRRQ------------ 72
G P PPGP +P PG PG P G +
Sbjct: 122 GIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGEKGNSVFILGA 181
Query: 73 VTYVRSGRRAP-----PGGGGSGTP--------EPGCCAPRGRPRRKG 107
V ++ R P PG G+G P EPG P G+P R G
Sbjct: 182 VKGIQGDRGDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPG 229
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 42.7 bits (99), Expect = 5e-04
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-----GGGSGT 91
GP P+ PPGP PGPH PP P P G + T G P G G
Sbjct: 521 GPQGPSIIGPPGP----PGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAM 576
Query: 92 PEPGCCAPRGRPRRKG 107
EPG P G P + G
Sbjct: 577 GEPGPRGPYGLPGKDG 592
Score = 33.9 bits (76), Expect = 0.24
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAP---GQP--------RGASRRQVTYVRSGRRAPPGGG 87
G P S PG P P LP P G+P G T G PPG G
Sbjct: 314 GEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRG 373
Query: 88 GSGTPEPGCCAPRGRPRRKGPR 109
G EPG P+G+ G R
Sbjct: 374 ERG--EPGAPGPKGKQGESGTR 393
Score = 33.1 bits (74), Expect = 0.40
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 53 PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP-EPGCCAPRGRPRRKG 107
PPGP PP P P G + + G R PG G G P E G P G P +KG
Sbjct: 196 PPGPPGPPGPRGPPGDTG------KDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKG 246
Score = 32.0 bits (71), Expect = 0.90
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS-GTPE-PG 95
PG P PPG + +P PG+P + + G PPG GS G P PG
Sbjct: 200 PGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGL----MGPLGPPGQKGSIGAPGIPG 255
Query: 96 CCAPRGRPRRKG 107
+G P G
Sbjct: 256 MNGQKGEPGLPG 267
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 42.7 bits (99), Expect = 5e-04
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-----GGGSGT 91
GP P+ PPGP PGPH PP P P G + T G P G G
Sbjct: 521 GPQGPSIIGPPGP----PGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAM 576
Query: 92 PEPGCCAPRGRPRRKG 107
EPG P G P + G
Sbjct: 577 GEPGPRGPYGLPGKDG 592
Score = 33.9 bits (76), Expect = 0.24
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAP---GQP--------RGASRRQVTYVRSGRRAPPGGG 87
G P S PG P P LP P G+P G T G PPG G
Sbjct: 314 GEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRG 373
Query: 88 GSGTPEPGCCAPRGRPRRKGPR 109
G EPG P+G+ G R
Sbjct: 374 ERG--EPGAPGPKGKQGESGTR 393
Score = 33.1 bits (74), Expect = 0.40
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 53 PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP-EPGCCAPRGRPRRKG 107
PPGP PP P P G + + G R PG G G P E G P G P +KG
Sbjct: 196 PPGPPGPPGPRGPPGDTG------KDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKG 246
Score = 32.0 bits (71), Expect = 0.90
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS-GTPE-PG 95
PG P PPG + +P PG+P + + G PPG GS G P PG
Sbjct: 200 PGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGL----MGPLGPPGQKGSIGAPGIPG 255
Query: 96 CCAPRGRPRRKG 107
+G P G
Sbjct: 256 MNGQKGEPGLPG 267
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCA 98
GSP + PGP+ PPG PP P P G + +G PPG + G
Sbjct: 1375 GSPGPTGEPGPSG-PPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPG-------KTGPIG 1426
Query: 99 PRGRPRRKGP 108
P+G P + GP
Sbjct: 1427 PQGAPGKPGP 1436
Score = 35.8 bits (81), Expect = 0.062
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 33/103 (32%)
Query: 38 PGSPTRSAPPGP--------------AWRPPGPHLPPAPGQPRGASRRQVTYV------- 76
PG P PPGP A PPGP PP P+G S V +
Sbjct: 1293 PGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKG-SPGPVGFPGDPGPPG 1351
Query: 77 ---RSGRRAPPGG-------GGSGTPEP-GCCAPRGRPRRKGP 108
+G+ PPG G +G+P P G P G P ++GP
Sbjct: 1352 EPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGP 1394
Score = 33.5 bits (75), Expect = 0.31
Identities = 39/144 (27%), Positives = 48/144 (33%), Gaps = 35/144 (24%)
Query: 3 RERPPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRP--------- 53
++ PPG R L G V GL+ G+ PPGPA P
Sbjct: 1049 KDGPPGLRGFPGDRGLPGPVGALGLK----------GNEGPPGPPGPAGSPGERGPAGAA 1098
Query: 54 --------PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE--PGCCAPRGRP 103
PGP PP P +GA + G + P G G P PG P G P
Sbjct: 1099 GPIGIPGRPGPQGPPGPAGEKGAPGEK------GPQGPAGRDGLQGPVGLPGPAGPVGPP 1152
Query: 104 RRKGPRWHIDLQPWAGSAQSLDEE 127
G + I GS E+
Sbjct: 1153 GEDGDKGEIGEPGQKGSKGDKGEQ 1176
Score = 32.3 bits (72), Expect = 0.69
Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 35 RAGP-GSPTRSAPPGPAWRPPGPHLPPAPGQ--PRGASRRQVTYVRSGRRAPPGGGG--S 89
R GP G P PPG + P LP PG+ P+G+ G PG G
Sbjct: 848 RGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGS---------IGFPGFPGANGEKG 898
Query: 90 GTPEPGCCAPRGRPRRKGPR 109
G PG PRG+ GPR
Sbjct: 899 GRGTPGKPGPRGQRGPTGPR 918
Score = 32.3 bits (72), Expect = 0.69
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 38 PGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG----SGT 91
PG PGP P PGP P P G + G+ PG G SG
Sbjct: 1329 PGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGP 1388
Query: 92 P----EPGCCAPRGRPRRKGPRWHIDLQ 115
P PG P GR KG + L+
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLE 1416
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG----GGGSGTPE 93
PGSP PPGP P P L G P+G G PPG G G P
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPGLKGDSG-PKGEKGHPGLI---GLIGPPGEQGEKGDRGLPG 1507
Query: 94 P-GCCAPRGRPRRKGP 108
P G P+G GP
Sbjct: 1508 PQGSSGPKGEQGITGP 1523
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 18/72 (25%)
Query: 38 PGSPTRSAPPG---PAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTPE 93
PG PPG P +P P +P A G P G+ PPG GG G P
Sbjct: 732 PGPQGAIGPPGEKGPLGKPGLPGMPGADGPPG----------HPGKEGPPGEKGGQGPPG 781
Query: 94 P----GCCAPRG 101
P G PRG
Sbjct: 782 PQGPIGYPGPRG 793
Score = 30.8 bits (68), Expect = 2.0
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS----GTPE 93
PG PGP GP P P +G Q G PPG G G P
Sbjct: 696 PGVTGMDGQPGPKGNV-GPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPG 754
Query: 94 -PGCCAPRGRPRRKGP 108
PG P G P ++GP
Sbjct: 755 MPGADGPPGHPGKEGP 770
Score = 29.6 bits (65), Expect = 4.5
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 36 AGP-GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
+GP G + P GP PPGP P P P+GA SG P G G P P
Sbjct: 1512 SGPKGEQGITGPSGPIG-PPGPPGLPGPPGPKGAKG------SSGPTGPKGEAGHPGP-P 1563
Query: 95 GCCAPRG 101
G P G
Sbjct: 1564 GPPGPPG 1570
Score = 29.3 bits (64), Expect = 5.8
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 38 PGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP--- 92
PG P + G P PGP P PRG + + G + GG G P
Sbjct: 888 PGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGE 947
Query: 93 --EPGCCAPRGRPRRKGP 108
G P G P KGP
Sbjct: 948 RGPNGPQGPTGFPGPKGP 965
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 42.4 bits (98), Expect = 7e-04
Identities = 28/70 (40%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 37 GPGSPTRSAPPGP--AWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE- 93
G T PPGP A PPGP P P P G Q G PPG G P
Sbjct: 813 GSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSI 872
Query: 94 PGCCAPRGRP 103
PG PRG P
Sbjct: 873 PGPPGPRGPP 882
Score = 42.4 bits (98), Expect = 7e-04
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
GP P+ PPGP PPG LP PG P T++ SG PPG G
Sbjct: 866 GPPGPSIPGPPGPRG-PPGEGLPGPPGPPGSFLSNSETFL-SGPPGPPGPPG-------- 915
Query: 97 CAPRGRPRRKGPRWHIDLQPWAGSAQS 123
P+G GPR H Q G + S
Sbjct: 916 --PKGDQGPPGPRGHQGEQGLPGFSTS 940
Score = 38.1 bits (87), Expect = 0.013
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
PG P + P GP P P P G+P GA + VT S PG G PG
Sbjct: 775 PGKPGLTGPQGPQGLPGTPGRPGIKGEP-GAPGKIVTSEGSSMLTVPGPPG----PPGAM 829
Query: 98 APRGRPRRKGP 108
P G P GP
Sbjct: 830 GPPGPPGAPGP 840
Score = 29.3 bits (64), Expect = 5.8
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
R PG PGP P P PG P G G + P G GS +P
Sbjct: 566 RGSPGPKGDMGSPGPKGDRGFPGTPGIPG-PLG---------HPGPQGPKGQKGS-VGDP 614
Query: 95 GCCAPRGRPRRKGP 108
G P G+ R+GP
Sbjct: 615 GMEGPMGQRGREGP 628
Score = 29.3 bits (64), Expect = 5.8
Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 35 RAGPGSPTRSAPPGPAW--------------RPPGPHLPPAPGQPRGASRRQVTYVRSGR 80
+ GSP PPGP GP PP P +G + G
Sbjct: 667 KGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGM 726
Query: 81 RAPPGGGGSGTPEPGCCAPRGRPRRKGPR 109
R PG G + G P G +GPR
Sbjct: 727 RGLPGAVGEPGAK-GAMGPAGPDGHQGPR 754
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 41.2 bits (95), Expect = 0.001
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 35 RAGPGSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP 92
R G P + PG A R PPG + P P P G S + G PPG G
Sbjct: 887 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG---- 942
Query: 93 EPGCCAPRGRPRRKG 107
EPG P G P KG
Sbjct: 943 EPGLQGPAGPPGEKG 957
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/77 (38%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS----GTPE 93
PG P S P GP PPGP P PG A + ++G R PPG G+ GTP
Sbjct: 230 PGEPGVSGPMGPR-GPPGP--PGKPGDDGEAGKPG----KAGERGPPGPQGARGFPGTPG 282
Query: 94 -PGCCAPRGRPRRKGPR 109
PG RG P G +
Sbjct: 283 LPGVKGHRGYPGLDGAK 299
Score = 37.7 bits (86), Expect = 0.016
Identities = 31/79 (39%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTPE 93
R PG + PPGPA GP P A GQP GA Q + G PG G SG P
Sbjct: 818 RGAPGERGETGPPGPAGF-AGP--PGADGQP-GAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 94 P----GCCAPRGRPRRKGP 108
P G P+G +GP
Sbjct: 874 PQGPTGVTGPKGARGAQGP 892
Score = 37.4 bits (85), Expect = 0.021
Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG----GGSG 90
R G P + PPGP GP P APG A +G R P G G G
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG-------PTGARGPEGAQGPRGEPG 396
Query: 91 TP-EPGCCAPRGRPRRKG 107
TP PG G P G
Sbjct: 397 TPGSPGPAGASGNPGTDG 414
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 30/101 (29%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPP----------APGQPRGASRRQVTYVRS----- 78
R PG+P PPG PPGP PP A G A Q+ ++
Sbjct: 151 RDGEPGTPGNPGPPG----PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 206
Query: 79 GRRAPPGGGGSGTP-----------EPGCCAPRGRPRRKGP 108
G R PPG G+ P EPG P G GP
Sbjct: 207 GPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGP 247
Score = 34.3 bits (77), Expect = 0.18
Identities = 29/84 (34%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP--EPG 95
PG GPA P GP PP P P G G P G G P PG
Sbjct: 1145 PGPSGDQGASGPAG-PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPG 1203
Query: 96 CCAPRGRPRRKGPRWHIDLQPWAG 119
P G P GP ID+ +AG
Sbjct: 1204 NPGPPGPPGPPGP--GIDMSAFAG 1225
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/105 (28%), Positives = 35/105 (33%), Gaps = 34/105 (32%)
Query: 38 PGSPTRSAPPGP--AWRP------------------PGPHLPPAPGQPRGASRRQVTYVR 77
PG P PPGP A P GP P P P+GA +
Sbjct: 431 PGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGK 490
Query: 78 SGRRAPPGG-------GGSGTP-------EPGCCAPRGRPRRKGP 108
G R PGG G G P + G P+G P +GP
Sbjct: 491 RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGP 535
Score = 32.7 bits (73), Expect = 0.53
Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
GP PT P A GP P A G P A GR PPG G+ P PG
Sbjct: 873 GPQGPTGVTGPKGARGAQGP--PGATGFPGAA----------GRVGPPGSNGNPGP-PGP 919
Query: 97 CAPRGRPRRKGPR 109
P G+ KG R
Sbjct: 920 PGPSGKDGPKGAR 932
Score = 32.7 bits (73), Expect = 0.53
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 36 AGPGSPTRSAPPGPAWRP--------PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGG 87
AGP P PPGP PGP PP PRG S G PPG
Sbjct: 1157 AGPSGPR--GPPGPVGPSGKDGANGIPGPIGPPG---PRGRSGETGPAGPPGNPGPPGPP 1211
Query: 88 GSGTPEPGCCAPRG-RPRRKGP 108
G P A G PR KGP
Sbjct: 1212 GPPGPGIDMSAFAGLGPREKGP 1233
Score = 32.3 bits (72), Expect = 0.69
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP-EPG 95
PG + PG GP PP P P G + G + PG G G P PG
Sbjct: 100 PGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPG 159
Query: 96 CCAPRGRPRRKGP 108
P G P GP
Sbjct: 160 NPGPPGPPGPPGP 172
Score = 32.0 bits (71), Expect = 0.90
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 37 GP-GSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS---- 89
GP G P + PG + PPGP PP P G R+ + G PPG G+
Sbjct: 999 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS---PGADGPPGRDGAAGVK 1055
Query: 90 -------GTPEPGCCAPRGRPRRKGP 108
PG P G P GP
Sbjct: 1056 GDRGETGAVGAPGAPGPPGSPGPAGP 1081
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP-- 92
R PG+P P G + P +P A G GA G R PPG G+ P
Sbjct: 392 RGEPGTPGSPGPAGASGNPGTDGIPGAKGS-AGAPGIAGAPGFPGPRGPPGPQGATGPLG 450
Query: 93 ------EPGCC------APRGRPRRKGPR 109
EPG P+G P GP+
Sbjct: 451 PKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 479
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE- 93
+ PG R PG PGP PP P P G + G GG G +
Sbjct: 143 KGAPGPRGRDGEPGTPGN-PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG 201
Query: 94 -PGCCAPRGRPRRKG 107
G PRG P G
Sbjct: 202 PMGPMGPRGPPGPAG 216
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 37 GPGSPTRSAPPGPAWRPPG-PHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPG 95
G PT + P A P G P P +PG P GAS T G + G G PG
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPG-PAGASGNPGTDGIPGAKGSAGAPGI-AGAPG 432
Query: 96 CCAPRGRPRRKG 107
PRG P +G
Sbjct: 433 FPGPRGPPGPQG 444
Score = 30.0 bits (66), Expect = 3.4
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPG-------PHLPPAPGQPRGASRRQVTYVRSGRRAPPGG 86
++ PG+ PPGP PPG P +PG R V+ R
Sbjct: 1006 KQGAPGASGDRGPPGPV-GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 1064
Query: 87 GGSGTP-EPGCCAPRGRPRRKGPR 109
G G P PG P G ++G R
Sbjct: 1065 GAPGAPGPPGSPGPAGPTGKQGDR 1088
Score = 29.3 bits (64), Expect = 5.8
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG----------GG 87
PG R PPGP P + PG P+GA+ G PG G
Sbjct: 581 PGEDGRPGPPGPQGARGQPGVMGFPG-PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG 639
Query: 88 GSGTPEP-GCCAPRGRPRRKGP 108
+G P P G RG GP
Sbjct: 640 AAGPPGPAGPAGERGEQGAPGP 661
Score = 28.5 bits (62), Expect = 9.9
Identities = 28/86 (32%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRR------APPGGGG--- 88
PG+P PG G PP P P G Q SG + PPG GG
Sbjct: 623 PGAPGLRGLPGKDGET-GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 681
Query: 89 -SGTP----EPGCCAPRGRPRRKGPR 109
G P PG PRG G R
Sbjct: 682 DQGVPGEAGAPGLVGPRGERGFPGER 707
Score = 28.5 bits (62), Expect = 9.9
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQP--------RGASRRQVTYVRSGRRAPPG-GGGS 89
G P PPG +P +P G P RG + + G + P G G
Sbjct: 666 GLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTP 725
Query: 90 GTPEP-GCCAPRGRPRRKGP 108
GT P G P G P +GP
Sbjct: 726 GTDGPKGASGPAGPPGAQGP 745
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 41.2 bits (95), Expect = 0.001
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 35 RAGPGSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP 92
R G P + PG A R PPG + P P P G S + G PPG G
Sbjct: 818 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAG---- 873
Query: 93 EPGCCAPRGRPRRKG 107
EPG P G P KG
Sbjct: 874 EPGLQGPAGPPGEKG 888
Score = 37.7 bits (86), Expect = 0.016
Identities = 30/77 (38%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS----GTPE 93
PG P S P GP PPGP P PG A + ++G R PPG G+ GTP
Sbjct: 161 PGEPGVSGPMGPR-GPPGP--PGKPGDDGEAGKPG----KAGERGPPGPQGARGFPGTPG 213
Query: 94 -PGCCAPRGRPRRKGPR 109
PG RG P G +
Sbjct: 214 LPGVKGHRGYPGLDGAK 230
Score = 37.7 bits (86), Expect = 0.016
Identities = 31/79 (39%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTPE 93
R PG + PPGPA GP P A GQP GA Q + G PG G SG P
Sbjct: 749 RGAPGERGETGPPGPAGF-AGP--PGADGQP-GAKGEQGEAGQKGDAGAPGPQGPSGAPG 804
Query: 94 P----GCCAPRGRPRRKGP 108
P G P+G +GP
Sbjct: 805 PQGPTGVTGPKGARGAQGP 823
Score = 37.4 bits (85), Expect = 0.021
Identities = 27/78 (34%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG----GGSG 90
R G P + PPGP GP P APG A +G R P G G G
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG-------PTGARGPEGAQGPRGEPG 327
Query: 91 TP-EPGCCAPRGRPRRKG 107
TP PG G P G
Sbjct: 328 TPGSPGPAGASGNPGTDG 345
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 30/101 (29%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPP----------APGQPRGASRRQVTYVRS----- 78
R PG+P PPG PPGP PP A G A Q+ ++
Sbjct: 82 RDGEPGTPGNPGPPG----PPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 137
Query: 79 GRRAPPGGGGSGTP-----------EPGCCAPRGRPRRKGP 108
G R PPG G+ P EPG P G GP
Sbjct: 138 GPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGP 178
Score = 34.3 bits (77), Expect = 0.18
Identities = 29/84 (34%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP--EPG 95
PG GPA P GP PP P P G G P G G P PG
Sbjct: 1076 PGPSGDQGASGPAG-PSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPG 1134
Query: 96 CCAPRGRPRRKGPRWHIDLQPWAG 119
P G P GP ID+ +AG
Sbjct: 1135 NPGPPGPPGPPGP--GIDMSAFAG 1156
Score = 33.9 bits (76), Expect = 0.24
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 22 VLLFGLRLCAELRRAG-----PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYV 76
++L L + A LR G PG + PG GP PP P P G +
Sbjct: 10 LVLLTLLVAAVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRG 69
Query: 77 RSGRRAPPG-GGGSGTP-EPGCCAPRGRPRRKGP 108
G + PG G G P PG P G P GP
Sbjct: 70 DKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGP 103
Score = 33.5 bits (75), Expect = 0.31
Identities = 30/105 (28%), Positives = 35/105 (33%), Gaps = 34/105 (32%)
Query: 38 PGSPTRSAPPGP--AWRP------------------PGPHLPPAPGQPRGASRRQVTYVR 77
PG P PPGP A P GP P P P+GA +
Sbjct: 362 PGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGK 421
Query: 78 SGRRAPPGG-------GGSGTP-------EPGCCAPRGRPRRKGP 108
G R PGG G G P + G P+G P +GP
Sbjct: 422 RGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGP 466
Score = 32.7 bits (73), Expect = 0.53
Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
GP PT P A GP P A G P A GR PPG G+ P PG
Sbjct: 804 GPQGPTGVTGPKGARGAQGP--PGATGFPGAA----------GRVGPPGSNGNPGP-PGP 850
Query: 97 CAPRGRPRRKGPR 109
P G+ KG R
Sbjct: 851 PGPSGKDGPKGAR 863
Score = 32.7 bits (73), Expect = 0.53
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 36 AGPGSPTRSAPPGPAWRP--------PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGG 87
AGP P PPGP PGP PP PRG S G PPG
Sbjct: 1088 AGPSGPR--GPPGPVGPSGKDGANGIPGPIGPPG---PRGRSGETGPAGPPGNPGPPGPP 1142
Query: 88 GSGTPEPGCCAPRG-RPRRKGP 108
G P A G PR KGP
Sbjct: 1143 GPPGPGIDMSAFAGLGPREKGP 1164
Score = 32.0 bits (71), Expect = 0.90
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 37 GP-GSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS---- 89
GP G P + PG + PPGP PP P G R+ + G PPG G+
Sbjct: 930 GPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGS---PGADGPPGRDGAAGVK 986
Query: 90 -------GTPEPGCCAPRGRPRRKGP 108
PG P G P GP
Sbjct: 987 GDRGETGAVGAPGAPGPPGSPGPAGP 1012
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP-- 92
R PG+P P G + P +P A G GA G R PPG G+ P
Sbjct: 323 RGEPGTPGSPGPAGASGNPGTDGIPGAKGS-AGAPGIAGAPGFPGPRGPPGPQGATGPLG 381
Query: 93 ------EPGCC------APRGRPRRKGPR 109
EPG P+G P GP+
Sbjct: 382 PKGQTGEPGIAGFKGEQGPKGEPGPAGPQ 410
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE- 93
+ PG R PG PGP PP P P G + G GG G +
Sbjct: 74 KGAPGPRGRDGEPGTPGN-PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG 132
Query: 94 -PGCCAPRGRPRRKG 107
G PRG P G
Sbjct: 133 PMGPMGPRGPPGPAG 147
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 37 GPGSPTRSAPPGPAWRPPG-PHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPG 95
G PT + P A P G P P +PG P GAS T G + G G PG
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPG-PAGASGNPGTDGIPGAKGSAGAPGI-AGAPG 363
Query: 96 CCAPRGRPRRKG 107
PRG P +G
Sbjct: 364 FPGPRGPPGPQG 375
Score = 30.0 bits (66), Expect = 3.4
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPG-------PHLPPAPGQPRGASRRQVTYVRSGRRAPPGG 86
++ PG+ PPGP PPG P +PG R V+ R
Sbjct: 937 KQGAPGASGDRGPPGPV-GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 995
Query: 87 GGSGTP-EPGCCAPRGRPRRKGPR 109
G G P PG P G ++G R
Sbjct: 996 GAPGAPGPPGSPGPAGPTGKQGDR 1019
Score = 29.3 bits (64), Expect = 5.8
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG----------GG 87
PG R PPGP P + PG P+GA+ G PG G
Sbjct: 512 PGEDGRPGPPGPQGARGQPGVMGFPG-PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG 570
Query: 88 GSGTPEP-GCCAPRGRPRRKGP 108
+G P P G RG GP
Sbjct: 571 AAGPPGPAGPAGERGEQGAPGP 592
Score = 28.5 bits (62), Expect = 9.9
Identities = 28/86 (32%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRR------APPGGGG--- 88
PG+P PG G PP P P G Q SG + PPG GG
Sbjct: 554 PGAPGLRGLPGKDGET-GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 612
Query: 89 -SGTP----EPGCCAPRGRPRRKGPR 109
G P PG PRG G R
Sbjct: 613 DQGVPGEAGAPGLVGPRGERGFPGER 638
Score = 28.5 bits (62), Expect = 9.9
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQP--------RGASRRQVTYVRSGRRAPPG-GGGS 89
G P PPG +P +P G P RG + + G + P G G
Sbjct: 597 GLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTP 656
Query: 90 GTPEP-GCCAPRGRPRRKGP 108
GT P G P G P +GP
Sbjct: 657 GTDGPKGASGPAGPPGAQGP 676
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP---- 92
PG P R+ PPG P P L P P P G + + V G + PPG G GTP
Sbjct: 763 PGPPGRAGPPGSPCLPGPPGL-PCPVSPLGPAGPALQTV-PGPQGPPGPPGRDGTPGRDG 820
Query: 93 EPGCCAPRGRPRRKGPR 109
EPG G+P GP+
Sbjct: 821 EPGDPGEDGKPGDTGPQ 837
Score = 39.7 bits (91), Expect = 0.004
Identities = 36/100 (36%), Positives = 40/100 (40%), Gaps = 26/100 (26%)
Query: 31 AELRRAGP-GSPTRSAPPGPAWR-----PPGPHLPPAPGQ-----------PRGASRRQV 73
AE R GP G P PPGP PPGP PGQ +G +
Sbjct: 1277 AESSRPGPPGLPGNQGPPGPKGAKGEVGPPGP-----PGQFPFDFLQLEAEMKGEKGDRG 1331
Query: 74 TYVRSGRRAPPGGG---GSGTP-EPGCCAPRGRPRRKGPR 109
+ G R PGGG GS P PG PRG P GP+
Sbjct: 1332 DAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPK 1371
Score = 34.7 bits (78), Expect = 0.14
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 38 PGSPTRSAPPG-PAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP-- 94
PG P R PPG P PGP PP P G + ++ + +G AP G G P P
Sbjct: 937 PGVPGREGPPGFPGL--PGPPGPPGREGPPGRTGQKGSLGEAG--APGHKGSKGAPGPAG 992
Query: 95 --------GCCAPRGRPRRKGP 108
G P G P GP
Sbjct: 993 ARGESGLAGAPGPAGPPGPPGP 1014
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE-PGCC 97
G+P + PPGP PGP PP PG P G + + A G G P PG
Sbjct: 1001 GAPGPAGPPGP----PGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLK 1056
Query: 98 APRGRPRRKGPRWHI 112
G P G + +
Sbjct: 1057 GDPGVPGLPGAKGEV 1071
Score = 33.1 bits (74), Expect = 0.40
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG--- 90
R PG P PPG PPG PP +G+ G + PG G+
Sbjct: 942 REGPPGFPGLPGPPG----PPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGES 997
Query: 91 --TPEPGCCAPRGRPRRKGP 108
PG P G P GP
Sbjct: 998 GLAGAPGPAGPPGPPGPPGP 1017
Score = 32.7 bits (73), Expect = 0.53
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 35 RAGPGSPTRSAPPGPAWR----PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG 88
R PG P PPG + PPGP P PG P + T G PPG G
Sbjct: 1376 RGQPGPPGPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPG 1431
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 6 PPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQP 65
PPGR CL G L + GP P PGP PPGP PG
Sbjct: 765 PPGRAGPPGSPCLPGPP-----GLPCPVSPLGPAGPALQTVPGPQ-GPPGP-----PG-- 811
Query: 66 RGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKG 107
R T R G PG G +PG P+G P G
Sbjct: 812 -----RDGTPGRDGEPGDPGEDG----KPGDTGPQGFPGTPG 844
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
G G PPGP PPGP PG P S + S R PPG G+ P PG
Sbjct: 1247 GFGMRGMPGPPGPPG-PPGP-----PGTPVYDSN---VFAESSRPGPPGLPGNQGP-PG- 1295
Query: 97 CAPRGRPRRKGP 108
P+G GP
Sbjct: 1296 --PKGAKGEVGP 1305
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 47 PGPAWRPPGPHLPPAPGQPRGASRRQVTYVRS-----GRRAPPGGGGSGTPEPGCCAPRG 101
PGP P P LP PG+ G + V GR PPG PG P G
Sbjct: 905 PGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGREGPPG-------FPGLPGPPG 956
Query: 102 RPRRKGP 108
P R+GP
Sbjct: 957 PPGREGP 963
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE 93
++ G P PPGP RP PG+P + G + PG G
Sbjct: 1195 QKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGL----KGEKGEPGDASLGFGM 1250
Query: 94 PGCCAPRGRPRRKGP 108
G P G P GP
Sbjct: 1251 RGMPGPPGPPGPPGP 1265
Score = 28.5 bits (62), Expect = 9.9
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 38 PGSPTRSAP------PGPAWR-PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG 90
PG+P P PG R PPGP PP P P ++T++ G G G
Sbjct: 840 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGP-SFRHDKLTFI------DMEGSGFG 892
Query: 91 TPEPGCCAPRGRPRRKGP 108
PRG P GP
Sbjct: 893 GDLEALRGPRGFPGPPGP 910
Score = 28.5 bits (62), Expect = 9.9
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
R PG PG + P G L PA +G G R PPG G P
Sbjct: 1168 RGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG---------EPGFRGPPGPYG----RP 1214
Query: 95 GCCAPRGRPRRKG 107
G G P R G
Sbjct: 1215 GYKGEIGFPGRPG 1227
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP---- 92
PG P R+ PPG P P L P P P G + + V G + PPG G GTP
Sbjct: 348 PGPPGRAGPPGSPCLPGPPGL-PCPVSPLGPAGPALQTV-PGPQGPPGPPGRDGTPGRDG 405
Query: 93 EPGCCAPRGRPRRKGPR 109
EPG G+P GP+
Sbjct: 406 EPGDPGEDGKPGDTGPQ 422
Score = 39.7 bits (91), Expect = 0.004
Identities = 36/100 (36%), Positives = 40/100 (40%), Gaps = 26/100 (26%)
Query: 31 AELRRAGP-GSPTRSAPPGPAWR-----PPGPHLPPAPGQ-----------PRGASRRQV 73
AE R GP G P PPGP PPGP PGQ +G +
Sbjct: 862 AESSRPGPPGLPGNQGPPGPKGAKGEVGPPGP-----PGQFPFDFLQLEAEMKGEKGDRG 916
Query: 74 TYVRSGRRAPPGGG---GSGTP-EPGCCAPRGRPRRKGPR 109
+ G R PGGG GS P PG PRG P GP+
Sbjct: 917 DAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPK 956
Score = 34.7 bits (78), Expect = 0.14
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 38 PGSPTRSAPPG-PAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP-- 94
PG P R PPG P PGP PP P G + ++ + +G AP G G P P
Sbjct: 522 PGVPGREGPPGFPGL--PGPPGPPGREGPPGRTGQKGSLGEAG--APGHKGSKGAPGPAG 577
Query: 95 --------GCCAPRGRPRRKGP 108
G P G P GP
Sbjct: 578 ARGESGLAGAPGPAGPPGPPGP 599
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE-PGCC 97
G+P + PPGP PGP PP PG P G + + A G G P PG
Sbjct: 586 GAPGPAGPPGP----PGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLK 641
Query: 98 APRGRPRRKGPRWHI 112
G P G + +
Sbjct: 642 GDPGVPGLPGAKGEV 656
Score = 33.1 bits (74), Expect = 0.40
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG--- 90
R PG P PPG PPG PP +G+ G + PG G+
Sbjct: 527 REGPPGFPGLPGPPG----PPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGES 582
Query: 91 --TPEPGCCAPRGRPRRKGP 108
PG P G P GP
Sbjct: 583 GLAGAPGPAGPPGPPGPPGP 602
Score = 32.7 bits (73), Expect = 0.53
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 35 RAGPGSPTRSAPPGPAWR----PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG 88
R PG P PPG + PPGP P PG P + T G PPG G
Sbjct: 961 RGQPGPPGPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPG 1016
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 6 PPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQP 65
PPGR CL G L + GP P PGP PPGP PG
Sbjct: 350 PPGRAGPPGSPCLPGPP-----GLPCPVSPLGPAGPALQTVPGPQ-GPPGP-----PG-- 396
Query: 66 RGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKG 107
R T R G PG G +PG P+G P G
Sbjct: 397 -----RDGTPGRDGEPGDPGEDG----KPGDTGPQGFPGTPG 429
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
G G PPGP PPGP PG P S + S R PPG G+ P PG
Sbjct: 832 GFGMRGMPGPPGPPG-PPGP-----PGTPVYDSN---VFAESSRPGPPGLPGNQGP-PG- 880
Query: 97 CAPRGRPRRKGP 108
P+G GP
Sbjct: 881 --PKGAKGEVGP 890
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 47 PGPAWRPPGPHLPPAPGQPRGASRRQVTYVRS-----GRRAPPGGGGSGTPEPGCCAPRG 101
PGP P P LP PG+ G + V GR PPG PG P G
Sbjct: 490 PGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGREGPPG-------FPGLPGPPG 541
Query: 102 RPRRKGP 108
P R+GP
Sbjct: 542 PPGREGP 548
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE 93
++ G P PPGP RP PG+P + G + PG G
Sbjct: 780 QKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGL----KGEKGEPGDASLGFGM 835
Query: 94 PGCCAPRGRPRRKGP 108
G P G P GP
Sbjct: 836 RGMPGPPGPPGPPGP 850
Score = 28.5 bits (62), Expect = 9.9
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 38 PGSPTRSAP------PGPAWR-PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG 90
PG+P P PG R PPGP PP P P ++T++ G G G
Sbjct: 425 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGP-SFRHDKLTFI------DMEGSGFG 477
Query: 91 TPEPGCCAPRGRPRRKGP 108
PRG P GP
Sbjct: 478 GDLEALRGPRGFPGPPGP 495
Score = 28.5 bits (62), Expect = 9.9
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
R PG PG + P G L PA +G G R PPG G P
Sbjct: 753 RGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG---------EPGFRGPPGPYG----RP 799
Query: 95 GCCAPRGRPRRKG 107
G G P R G
Sbjct: 800 GYKGEIGFPGRPG 812
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 40.8 bits (94), Expect = 0.002
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP---- 92
PG P R+ PPG P P L P P P G + + V G + PPG G GTP
Sbjct: 528 PGPPGRAGPPGSPCLPGPPGL-PCPVSPLGPAGPALQTV-PGPQGPPGPPGRDGTPGRDG 585
Query: 93 EPGCCAPRGRPRRKGPR 109
EPG G+P GP+
Sbjct: 586 EPGDPGEDGKPGDTGPQ 602
Score = 39.7 bits (91), Expect = 0.004
Identities = 36/100 (36%), Positives = 40/100 (40%), Gaps = 26/100 (26%)
Query: 31 AELRRAGP-GSPTRSAPPGPAWR-----PPGPHLPPAPGQ-----------PRGASRRQV 73
AE R GP G P PPGP PPGP PGQ +G +
Sbjct: 1042 AESSRPGPPGLPGNQGPPGPKGAKGEVGPPGP-----PGQFPFDFLQLEAEMKGEKGDRG 1096
Query: 74 TYVRSGRRAPPGGG---GSGTP-EPGCCAPRGRPRRKGPR 109
+ G R PGGG GS P PG PRG P GP+
Sbjct: 1097 DAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPK 1136
Score = 34.7 bits (78), Expect = 0.14
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 38 PGSPTRSAPPG-PAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP-- 94
PG P R PPG P PGP PP P G + ++ + +G AP G G P P
Sbjct: 702 PGVPGREGPPGFPGL--PGPPGPPGREGPPGRTGQKGSLGEAG--APGHKGSKGAPGPAG 757
Query: 95 --------GCCAPRGRPRRKGP 108
G P G P GP
Sbjct: 758 ARGESGLAGAPGPAGPPGPPGP 779
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE-PGCC 97
G+P + PPGP PGP PP PG P G + + A G G P PG
Sbjct: 766 GAPGPAGPPGP----PGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLK 821
Query: 98 APRGRPRRKGPRWHI 112
G P G + +
Sbjct: 822 GDPGVPGLPGAKGEV 836
Score = 33.1 bits (74), Expect = 0.40
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG--- 90
R PG P PPG PPG PP +G+ G + PG G+
Sbjct: 707 REGPPGFPGLPGPPG----PPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGES 762
Query: 91 --TPEPGCCAPRGRPRRKGP 108
PG P G P GP
Sbjct: 763 GLAGAPGPAGPPGPPGPPGP 782
Score = 32.7 bits (73), Expect = 0.53
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 35 RAGPGSPTRSAPPGPAWR----PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG 88
R PG P PPG + PPGP P PG P + T G PPG G
Sbjct: 1141 RGQPGPPGPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPG 1196
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 6 PPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQP 65
PPGR CL G L + GP P PGP PPGP PG
Sbjct: 530 PPGRAGPPGSPCLPGPP-----GLPCPVSPLGPAGPALQTVPGPQ-GPPGP-----PG-- 576
Query: 66 RGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKG 107
R T R G PG G +PG P+G P G
Sbjct: 577 -----RDGTPGRDGEPGDPGEDG----KPGDTGPQGFPGTPG 609
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
G G PPGP PPGP PG P S + S R PPG G+ P PG
Sbjct: 1012 GFGMRGMPGPPGPPG-PPGP-----PGTPVYDSN---VFAESSRPGPPGLPGNQGP-PG- 1060
Query: 97 CAPRGRPRRKGP 108
P+G GP
Sbjct: 1061 --PKGAKGEVGP 1070
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 47 PGPAWRPPGPHLPPAPGQPRGASRRQVTYVRS-----GRRAPPGGGGSGTPEPGCCAPRG 101
PGP P P LP PG+ G + V GR PPG PG P G
Sbjct: 670 PGPPGPPGVPGLPGEPGR-FGVNSSDVPGPAGLPGVPGREGPPG-------FPGLPGPPG 721
Query: 102 RPRRKGP 108
P R+GP
Sbjct: 722 PPGREGP 728
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE 93
++ G P PPGP RP PG+P + G + PG G
Sbjct: 960 QKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGL----KGEKGEPGDASLGFGM 1015
Query: 94 PGCCAPRGRPRRKGP 108
G P G P GP
Sbjct: 1016 RGMPGPPGPPGPPGP 1030
Score = 28.5 bits (62), Expect = 9.9
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 38 PGSPTRSAP------PGPAWR-PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG 90
PG+P P PG R PPGP PP P P ++T++ G G G
Sbjct: 605 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGP-SFRHDKLTFI------DMEGSGFG 657
Query: 91 TPEPGCCAPRGRPRRKGP 108
PRG P GP
Sbjct: 658 GDLEALRGPRGFPGPPGP 675
Score = 28.5 bits (62), Expect = 9.9
Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
R PG PG + P G L PA +G G R PPG G P
Sbjct: 933 RGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG---------EPGFRGPPGPYG----RP 979
Query: 95 GCCAPRGRPRRKG 107
G G P R G
Sbjct: 980 GYKGEIGFPGRPG 992
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 40.4 bits (93), Expect = 0.003
Identities = 34/96 (35%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAP---------GQPRGASRRQVTYVRSGRRAPP 84
R P +P AP P RPP P P AP PR S R+ R GRR PP
Sbjct: 54 RPVSPSAPRSIAPARPGARPPRPGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPP 113
Query: 85 GGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGS 120
G P P RR+G R LQP A +
Sbjct: 114 ---GHAPPSPSL-------RRRGAR---ALQPSAAA 136
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 40.4 bits (93), Expect = 0.003
Identities = 34/96 (35%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAP---------GQPRGASRRQVTYVRSGRRAPP 84
R P +P AP P RPP P P AP PR S R+ R GRR PP
Sbjct: 54 RPVSPSAPRSIAPARPGARPPRPGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPP 113
Query: 85 GGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGS 120
G P P RR+G R LQP A +
Sbjct: 114 ---GHAPPSPSL-------RRRGAR---ALQPSAAA 136
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 40.4 bits (93), Expect = 0.003
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 38 PGSPTRSAPPGPAWRP-----------PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG 86
PG P R GP P PGP PP P +GA +G PPG
Sbjct: 782 PGPPGRGVQ-GPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGA 840
Query: 87 GGSGTP----EPGCCAPRGRPRRKGPR 109
SG P + G RG P KGPR
Sbjct: 841 SVSGPPGRDGQQGQTGLRGTPGEKGPR 867
Score = 36.2 bits (82), Expect = 0.048
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVR--SGRRAPPGGGGSGTPEPG 95
PG PPGP P P +PG P R +T + G PPG G PG
Sbjct: 1038 PGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPG----YPG 1093
Query: 96 CCAPRGRPRRKGPR 109
P G P KG R
Sbjct: 1094 ATGPPGLPGIKGER 1107
Score = 36.2 bits (82), Expect = 0.048
Identities = 34/114 (29%), Positives = 41/114 (35%), Gaps = 18/114 (15%)
Query: 38 PGSPTRSAPPGPAWR--------PPGP---HLPPAPGQPRGASRRQVTYVRSGRRAPPGG 86
PG P PPG PPG + PP P GA+ ++ GR PGG
Sbjct: 1331 PGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGG 1390
Query: 87 GGSG-----TPEPGCCAPRGRPRRKGPRWHIDLQPWAGSAQSL--DEEAWRFLR 133
G PG RG P GP L GS + +E RF+R
Sbjct: 1391 PGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIR 1444
Score = 35.8 bits (81), Expect = 0.062
Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG--SGTPEPGC 96
G P PGPA PPG PP G G+ PPG G EPG
Sbjct: 1222 GKPGLRGDPGPAG-PPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGA 1280
Query: 97 CAPRGRPRRKGPRWHI 112
P+GRP GP H+
Sbjct: 1281 MGPQGRP---GPPGHV 1293
Score = 31.6 bits (70), Expect = 1.2
Identities = 21/70 (30%), Positives = 25/70 (35%)
Query: 40 SPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAP 99
+P R PPG P P P +PG P R + R P G G G
Sbjct: 1471 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGE 1530
Query: 100 RGRPRRKGPR 109
G P GP+
Sbjct: 1531 NGLPGPPGPQ 1540
Score = 30.8 bits (68), Expect = 2.0
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPG--QPRGASRRQVTYVRSGRRAPPG-GGGSGTP-E 93
PG P PPGP + PGP A G RGA+ + G+ PPG G G P
Sbjct: 1287 PGPPGHVGPPGPPGQ-PGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGT 1345
Query: 94 PGCCAPRGRPRRKG 107
G G P ++G
Sbjct: 1346 DGAAGKEGPPGKQG 1359
Score = 30.4 bits (67), Expect = 2.6
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 47 PGPAWRPPGPHLPPAPGQPRGASRRQVT--YVRSGRRAPPGGGGSGTPEPGCCAPRGRPR 104
PGP +P P PG P R T G PPG G P PG PRG
Sbjct: 1083 PGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGP-PGPAGPRG--- 1138
Query: 105 RKGPR 109
+GP+
Sbjct: 1139 ERGPQ 1143
Score = 29.6 bits (65), Expect = 4.5
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS-GTP-EPG 95
PGS PPGPA P G P +G Q G PPG G G+P PG
Sbjct: 1122 PGSEGLPGPPGPA-GPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPG 1180
Query: 96 CCAPRGRPRRKGP 108
A +G +GP
Sbjct: 1181 PQAEKGSEGIRGP 1193
Score = 28.5 bits (62), Expect = 9.9
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCA 98
G P PGP PG LP PG P G + SG G GG +PG
Sbjct: 447 GEPGPPGLPGP----PGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGK-PGKPGVKG 501
Query: 99 PRGRP 103
+G P
Sbjct: 502 EKGDP 506
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 34 RRAGPGSP-TRSAPPGPAWRPPGPHL-PPAPGQPRGASRRQ--VTYVRSGRRAPPGGGGS 89
RR P P R P P P G L PP P RG+SR + Y R GR PG GS
Sbjct: 76 RRVSPSPPRARRGSPSP---PRGRRLFPPGPAGFRGSSRGESRADYARDGRGDHPGDSGS 132
Query: 90 GTPEPGCCA 98
PG C+
Sbjct: 133 RRRSPGLCS 141
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.0 bits (92), Expect = 0.003
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 38 PGSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG--GGGSGTPE 93
PG+ R PPGP+ PPGP P +G R G PPG G
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 94 PGCCAPRGRPRRKGPR 109
PG P G P GP+
Sbjct: 937 PGADGPAGAPGTPGPQ 952
Score = 37.4 bits (85), Expect = 0.021
Identities = 29/78 (37%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 35 RAGPGSPTRSAPPGPAW--RPPGPH-LPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGT 91
R PG PPGPA PPG P A G+P A + G PPG G
Sbjct: 796 RGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAK-------GDAGPPGPAGPAG 848
Query: 92 PEPGCCAPRGRPRRKGPR 109
P PG G P KG R
Sbjct: 849 P-PGPIGNVGAPGAKGAR 865
Score = 36.2 bits (82), Expect = 0.048
Identities = 32/105 (30%), Positives = 39/105 (37%), Gaps = 23/105 (21%)
Query: 38 PGSPTRSAPPGPAWR-----PPGPHLPPAPGQ--------PRGASRRQVTYVRSGRRAPP 84
PG ++ PPGPA + PPGP P A GQ P+GA+ G PP
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGP--PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Query: 85 GGGGSGTPE--------PGCCAPRGRPRRKGPRWHIDLQPWAGSA 121
G G + PG P G +GP Q G A
Sbjct: 605 GAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 649
Score = 34.7 bits (78), Expect = 0.14
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 37 GP-GSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE 93
GP G P + P G + PPGP PP P G S R+ G PG GS
Sbjct: 977 GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGA---PGAEGSPGRDGS---- 1029
Query: 94 PGCCAPRGRPRRKGP 108
PG RG GP
Sbjct: 1030 PGAKGDRGETGPAGP 1044
Score = 34.3 bits (77), Expect = 0.18
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 35 RAGPGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRR------APPGG 86
R PG P ++ G A +P PG PP P RG G R G
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGD 279
Query: 87 GGSGTP--EPGCCAPRGRPRRKGPR 109
G P EPG G P + GPR
Sbjct: 280 AGPAGPKGEPGSPGENGAPGQMGPR 304
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 53 PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG-------SGTPEP-GCCAPRGRPR 104
PPGP P P GAS +G R PPG G +G P P G PRGR
Sbjct: 1119 PPGPPGSPGEQGPSGASG------PAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTG 1172
Query: 105 RKGP 108
GP
Sbjct: 1173 DAGP 1176
Score = 33.1 bits (74), Expect = 0.40
Identities = 28/83 (33%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCA 98
G P PG A P GP PP P G R G R PPG G+ G
Sbjct: 203 GPPGEPGEPG-ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGA----RGLPG 257
Query: 99 PRGRPRRKGPRWHIDLQPWAGSA 121
G P KG R L G A
Sbjct: 258 TAGLPGMKGHRGFSGLDGAKGDA 280
Score = 32.0 bits (71), Expect = 0.90
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 36 AGP-GSPTRSAPPGPAWRPPGPHLPPAPGQ--PRGASRRQVTYVRSGRRAPPGGGGS--- 89
AGP GSP + PG A P L +PG P G + + GR PPG G+
Sbjct: 517 AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQ 576
Query: 90 ----GTPEPGCCAPRGRPRRKGPR 109
G P P A G P + G R
Sbjct: 577 AGVMGFPGPKGAA--GEPGKAGER 598
Score = 31.6 bits (70), Expect = 1.2
Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 21/101 (20%)
Query: 35 RAGPGSPTRSAPPGPAWRP-----PG-------PHLPPAPGQP--RGASRRQVTYVRSGR 80
R PG P + GPA P PG P + APG P RG S Q G
Sbjct: 370 RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ------GP 423
Query: 81 RAPPGGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGSA 121
PPG G+ + EPG +G KG + +Q G A
Sbjct: 424 GGPPGPKGN-SGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Score = 31.6 bits (70), Expect = 1.2
Identities = 31/88 (35%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 36 AGPGSPTRSA-PPGPAWRPPGPHL---------PPAPGQPRGASRRQVTYVRSGRRAPPG 85
AGP P A PPGP P P A G P GA+ R SG PPG
Sbjct: 838 AGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFP-GAAGRVGPPGPSGNAGPPG 896
Query: 86 -----GGGSGTPEPGCCAPRGRPRRKGP 108
G G G P GRP GP
Sbjct: 897 PPGPAGKEGGKGPRGETGPAGRPGEVGP 924
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 34 RRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE 93
R PG+ GPA P P P APG A +SG R G G P
Sbjct: 1026 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG-------KSGDRGETGPAGPAGP- 1077
Query: 94 PGCCAPRGRPRRKGPR 109
G RG +GPR
Sbjct: 1078 VGPVGARGPAGPQGPR 1093
Score = 30.8 bits (68), Expect = 2.0
Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 6 PPGRGCGVLRRCLLGAVLLFGLRLCAELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQP 65
PPG G R GA + G + A R PG PG A RP LP A G
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPAG-ERGSPGPAGPKGSPGEAGRPGEAGLPGAKG-- 539
Query: 66 RGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGP 108
+G PG G P PG GRP GP
Sbjct: 540 -----------LTGSPGSPGPDGKTGP-PGPAGQDGRPGPPGP 570
Score = 30.8 bits (68), Expect = 2.0
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 38 PGSPTRSAPPGPAWRPPGP------HLPPAPGQPRGASRRQVTYV--RSGRRAPPG-GGG 88
PG PPGPA P P PG A +R V + + G R PG G
Sbjct: 919 PGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 978
Query: 89 SGTPEPGCCAPRGRPRRKGP 108
SG EPG P G +GP
Sbjct: 979 SG--EPGKQGPSGASGERGP 996
Score = 30.4 bits (67), Expect = 2.6
Identities = 24/73 (32%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
R G P R PG P GP PP P P G + G GG S
Sbjct: 123 RGPAGPPGRDGIPGQPGLP-GPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPM 181
Query: 95 GCCAPRGRPRRKG 107
G PRG P G
Sbjct: 182 GPSGPRGLPGPPG 194
Score = 30.4 bits (67), Expect = 2.6
Identities = 31/102 (30%), Positives = 34/102 (33%), Gaps = 31/102 (30%)
Query: 39 GSPTRSAPPGPAWRP-----------PGP---------------HLPPAPGQPRGASRRQ 72
G P + PPG A +P PGP PP P PRGA+
Sbjct: 644 GLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAP 703
Query: 73 VTYVRSGRRAPPGGGGS-GTP----EPGCCAPRGRPRRKGPR 109
G PG GS G P PG G P KG R
Sbjct: 704 GNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR 745
Score = 30.4 bits (67), Expect = 2.6
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 35 RAGP-GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP- 92
+ GP G+ PPGP PPG PP GA + + R G G G P
Sbjct: 984 KQGPSGASGERGPPGPMG-PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042
Query: 93 -EPGCCAPRGRPRRKGP 108
PG G P GP
Sbjct: 1043 GPPGAPGAPGAPGPVGP 1059
Score = 30.0 bits (66), Expect = 3.4
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQ-----PRGASRRQVTYVRSGRRAPPGGGGS 89
R G+ + PPGP P P A G P+G + G PPG G+
Sbjct: 322 RGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGA 381
Query: 90 GTPEPGCCAPRGRPRRKG 107
P G G+P KG
Sbjct: 382 AGP-AGNPGADGQPGAKG 398
Score = 29.6 bits (65), Expect = 4.5
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 38 PGSPTRSAPPGPAWRP-----PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS--G 90
PG S P GPA PG P P P G + + G + PG G+
Sbjct: 778 PGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGD 837
Query: 91 TPEPGCCAPRGRP 103
PG P G P
Sbjct: 838 AGPPGPAGPAGPP 850
Score = 29.3 bits (64), Expect = 5.8
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQ--PR------------GASRRQVTYVRSGRRAPP 84
G+ + P GP P P APGQ PR G + + +G PP
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPP 334
Query: 85 GGGGSGTPE--PGCCAPRGRPRRKGPR 109
G G P PG +G +GPR
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPR 361
Score = 28.9 bits (63), Expect = 7.6
Identities = 30/98 (30%), Positives = 34/98 (34%), Gaps = 30/98 (30%)
Query: 38 PGSPTRSAPPGPAWR-----------------PPGPHLPPAPGQPRG-------ASRRQV 73
PG+P P GPA + P G P P PRG R +
Sbjct: 1048 PGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGI 1107
Query: 74 TYVR--SGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPR 109
R SG + PPG GS PG P G GPR
Sbjct: 1108 KGHRGFSGLQGPPGPPGS----PGEQGPSGASGPAGPR 1141
Score = 28.5 bits (62), Expect = 9.9
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 39 GSPTRSAPPGPAWR--------PPGPHLPPAPGQPRGA 68
G P PPGP R PPGP PP P P A
Sbjct: 1157 GLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.0 bits (92), Expect = 0.003
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 35 RAGPGSPTRSAPPGPAWRP-----PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG---- 85
R PG+P PGPA + PGP P P P G + T G PPG
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGN 1168
Query: 86 ---GGGSGTP-EPGCCAPRGRPRRKGP 108
G G+P PG P G P GP
Sbjct: 1169 RGERGSEGSPGHPGQPGPPGPPGAPGP 1195
Score = 39.3 bits (90), Expect = 0.006
Identities = 29/77 (37%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 35 RAGPGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG-SGT 91
R PG + PPGPA P PG + P RGA + G PPGG G +G
Sbjct: 794 RGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGP 853
Query: 92 PEP-GCCAPRGRPRRKG 107
P P G RG P G
Sbjct: 854 PGPQGVKGERGSPGGPG 870
Score = 38.9 bits (89), Expect = 0.007
Identities = 32/77 (41%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 37 GPGSPTRS-APPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG-SGTP-- 92
GP PT PPGPA +P APG P A R R G PPG G G P
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGER-GETGPPGPAGFPGAPGQ 817
Query: 93 --EPGCCAPRGRPRRKG 107
EPG RG P KG
Sbjct: 818 NGEPGGKGERGAPGEKG 834
Score = 38.5 bits (88), Expect = 0.010
Identities = 28/87 (32%), Positives = 33/87 (37%), Gaps = 22/87 (25%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP-- 92
R PG PPG A PPG P P P+G V+ R +P G G +G P
Sbjct: 827 RGAPGEKGEGGPPGVAG-PPGGSGPAGPPGPQG--------VKGERGSPGGPGAAGFPGA 877
Query: 93 -----------EPGCCAPRGRPRRKGP 108
PG P G P + GP
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGP 904
Score = 37.4 bits (85), Expect = 0.021
Identities = 28/74 (37%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
PGSP PPG + GP PP P G S SGR PG G P PG
Sbjct: 194 PGSPGYQGPPGEPGQ-AGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGP-PGIK 251
Query: 98 APRGRPRRKGPRWH 111
P G P G + H
Sbjct: 252 GPAGIPGFPGMKGH 265
Score = 36.6 bits (83), Expect = 0.037
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 37 GP-GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG---------- 85
GP GSP + PPGPA P P G P+G + + G + PPG
Sbjct: 894 GPSGSPGKDGPPGPAGNTGAPGSPGVSG-PKGDAGQPGEKGSPGAQGPPGAPGPLGIAGI 952
Query: 86 -GGGSGTPEPGCCAPRGRPRRKG 107
G PG PRG P +G
Sbjct: 953 TGARGLAGPPGMPGPRGSPGPQG 975
Score = 36.2 bits (82), Expect = 0.048
Identities = 28/78 (35%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG----SG 90
R GPG P PPG GP PP P P G G + PG GG +G
Sbjct: 596 RGGPGGPGPQGPPGKNGE-TGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENG 654
Query: 91 TP-EPGCCAPRGRPRRKG 107
P EPG G P G
Sbjct: 655 KPGEPGPKGDAGAPGAPG 672
Score = 35.4 bits (80), Expect = 0.081
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 35 RAGPGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGT 91
R PG P + PG P PG + P P P G+ G+ PPG G +G
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGS---------PGKDGPPGPAGNTGA 913
Query: 92 P-EPGCCAPR---GRPRRKG 107
P PG P+ G+P KG
Sbjct: 914 PGSPGVSGPKGDAGQPGEKG 933
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTPE-PG 95
PG P ++ P GP PPG P P G S R G PPG G +G P PG
Sbjct: 203 PGEPGQAGPSGPPG-PPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPG 261
Query: 96 CCAPRGRPRRKGPR 109
RG R G +
Sbjct: 262 MKGHRGFDGRNGEK 275
Score = 35.0 bits (79), Expect = 0.11
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG-GGSGTP-EPGC 96
G+P + P G A P +P PG RG G+ PPG G SG P PG
Sbjct: 510 GAPGPAGPRGAAGEPGRDGVPGGPGM-RGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGP 568
Query: 97 CAPRGRP 103
PRG+P
Sbjct: 569 SGPRGQP 575
Score = 35.0 bits (79), Expect = 0.11
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCA 98
G+ + PPG PGP P P +G S + SG R PPG G PG
Sbjct: 954 GARGLAGPPGM----PGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGL----PGLAG 1005
Query: 99 PRGRPRRKG 107
G P R G
Sbjct: 1006 TAGEPGRDG 1014
Score = 34.7 bits (78), Expect = 0.14
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 54 PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG----GGGSGTP-EPGCCAP--------- 99
PGP PP P P G S + G + PPG G SG P PG P
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGE 232
Query: 100 RGRPRRKGPR 109
GRP R G R
Sbjct: 233 SGRPGRPGER 242
Score = 33.9 bits (76), Expect = 0.24
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
PGS PPGP+ P G PP P GA G PG GS PG
Sbjct: 884 PGSNGNPGPPGPSGSP-GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGS----PGAQ 938
Query: 98 APRGRP 103
P G P
Sbjct: 939 GPPGAP 944
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 36 AGPGSPTR-SAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP 92
AGP P S PPG PGP PP P RG + + G+ PPG G+ P
Sbjct: 1136 AGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGP 1195
Query: 93 EPGCCAPRG 101
CC G
Sbjct: 1196 ---CCGGVG 1201
Score = 32.7 bits (73), Expect = 0.53
Identities = 20/56 (35%), Positives = 21/56 (37%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEP 94
GSP GPA P P L A G P A +R G P G G P P
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGP 445
Score = 32.7 bits (73), Expect = 0.53
Identities = 28/97 (28%), Positives = 32/97 (32%), Gaps = 25/97 (25%)
Query: 38 PGSPTRSAPPGPAWR-----------PPGPHLPPAPGQPRGA-------------SRRQV 73
PG+P PPGP P GP P P RGA R
Sbjct: 1043 PGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGA 1102
Query: 74 TYVRSGRRAPPGGGGSGTPEP-GCCAPRGRPRRKGPR 109
++ R P G G+P P G G P GPR
Sbjct: 1103 AGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPR 1139
Score = 32.3 bits (72), Expect = 0.69
Identities = 31/88 (35%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 35 RAGPGSPTRSAPPG-PAWR-----PPGPHLPPAPGQP--RGASRRQVTYVRSGRRAPPGG 86
R G P R PG P R P GP PG P +G S R SG R PG
Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGV 577
Query: 87 GGSGTPE-----PGCCAPRGRPRRKGPR 109
G P+ PG RG P GP+
Sbjct: 578 MGFPGPKGNDGAPGKNGERGGPGGPGPQ 605
Score = 32.0 bits (71), Expect = 0.90
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 38 PGSPTRSAPPGP-----AWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP 92
PG + PPGP A PPGP P A G P + + R G +P G G
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGPPGP--PGAAGTP---GLQGMPGERGGLGSPGPKGDKG-- 744
Query: 93 EPGCCAPRGRPRRKGPR 109
EPG G P + GPR
Sbjct: 745 EPGGPGADGVPGKDGPR 761
Score = 31.6 bits (70), Expect = 1.2
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 27/98 (27%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPG-------QPRGASRRQVTY-VRS----------- 78
PG P R+ PG +P P P PG P+ S + +Y V+S
Sbjct: 114 PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP 173
Query: 79 GRRAPPG----GGGSGTP----EPGCCAPRGRPRRKGP 108
G PPG G SG P PG P G P + GP
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGP 211
Score = 31.6 bits (70), Expect = 1.2
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQ--PRGASRRQVTYVRSGRRAPPGGGGSGTP--- 92
PGSP GPA P P G+ P+G + Q G PGG G P
Sbjct: 344 PGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403
Query: 93 --EPGCCAPRGRPRRKGPRWHIDLQPWAG 119
PG RG P G L+ AG
Sbjct: 404 PGAPGLMGARGPPGPAGANGAPGLRGGAG 432
Score = 31.6 bits (70), Expect = 1.2
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
G G + PG P P PP P P G S + G P G G+ PG
Sbjct: 1030 GKGDRGENGSPGAPGAPGHPG-PPGPVGPAGKSGDR------GESGPAGPAGA----PGP 1078
Query: 97 CAPRGRPRRKGPR 109
RG P +GPR
Sbjct: 1079 AGSRGAPGPQGPR 1091
Score = 30.4 bits (67), Expect = 2.6
Identities = 28/83 (33%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 39 GSPTRSAPPGPAW-----RPPGPHLPPAPGQPRGAS---RRQVTYVRSGRRAPPGG---- 86
G+P P GP P G P P PRGA+ R G R PG
Sbjct: 486 GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 87 GGSGTP-EPGCCAPRGRPRRKGP 108
G G P PG GRP GP
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGP 568
Score = 29.6 bits (65), Expect = 4.5
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 39 GSPTRSAPPGPAWRPPGPHLPPAPGQ--PRGASRRQVTYVRSGRRAPPGGGGSGTPEPGC 96
GS + PPGP P P A G+ P G+ + G P G G+ P PG
Sbjct: 327 GSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP-PGP 385
Query: 97 CAPRGRPRRKG 107
G P KG
Sbjct: 386 PGINGSPGGKG 396
Score = 29.6 bits (65), Expect = 4.5
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQP--RGASRRQVTYVRSGRRAPPG-------GGG 88
PG PPGPA P L G+P GA G PG G
Sbjct: 407 PGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Query: 89 SGTPE-------PGCCAPRGRPRRKGP 108
G+P PG RG P +GP
Sbjct: 467 DGSPGEPGANGLPGAAGERGAPGFRGP 493
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 40.0 bits (92), Expect = 0.003
Identities = 34/93 (36%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 35 RAGPGSPTRSAP--PGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGR-------RAPPG 85
R+GP SP +AP PG PP P P G PR SR R+ R RAPP
Sbjct: 456 RSGPQSPAPAAPAQPGATLAPPTPPRPRDGGTPR-HSRALSWAARAARPLPLFLGRAPPP 514
Query: 86 GGGSGTPEPGCCAPRGRP-RRKGPRWHIDLQPW 117
P P R RP +R PR PW
Sbjct: 515 RPAVEQPPPKVYVTRVRPGQRASPRAPAPRAPW 547
Score = 28.5 bits (62), Expect = 9.9
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 35 RAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPP---------- 84
R PG R++P PA R P P P PR R Q+ RAPP
Sbjct: 529 RVRPGQ--RASPRAPAPRAPWPPFPGVFLHPRPLPRVQL-------RAPPRPPRPHGRRT 579
Query: 85 GGGGSGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGSAQS-LDEEAWRFLRYISTTQIA 141
GG + P P A + R+G L P A + S L EA ++S +Q++
Sbjct: 580 GGPQATQPRPPARAQATQGGREGQA--RTLGPAAPTVDSNLSSEARPVTSFLSLSQVS 635
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 37 GPGSPTRSAPPGPAWRPPGPHLPPAPGQP--------RGASRRQVTYVRSGRRAPPGGGG 88
GP +P PP P PP P PP PG P GA PGGGG
Sbjct: 161 GPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGG 220
Query: 89 SGTPEPGCCAPRGRPRRKGPRWHIDLQPWAGSAQS 123
+G P + R+ + P A A+S
Sbjct: 221 AGAPGLAAAIAGAKLRKVSKQEEASGGPTAPKAES 255
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 39.7 bits (91), Expect = 0.004
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 38 PGSPTRSAPPG---PAWRPPGPHLPPAPGQ--PRGA-----SRRQVTYVRSGRRAPPG-- 85
PG P PPG P P P +P PGQ PRG+ +++++ GRR P G
Sbjct: 249 PGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPP 308
Query: 86 ---GGGSGTPEPGCCAPRGRPRRKG 107
G E G PRG P G
Sbjct: 309 GAPGRDGSKGERGAPGPRGSPGPPG 333
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 39.7 bits (91), Expect = 0.004
Identities = 29/77 (37%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 38 PGSPTRSAPPGPAWRP-------PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSG 90
PG P PPGP P PG H P P P G S R G+ PPG G
Sbjct: 82 PGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFS-------RMGKAGPPGLPGKV 134
Query: 91 TPEPGCCAPRGRPRRKG 107
P PG RG P +G
Sbjct: 135 GP-PGQPGLRGEPGIRG 150
Score = 35.0 bits (79), Expect = 0.11
Identities = 34/107 (31%), Positives = 40/107 (37%), Gaps = 29/107 (27%)
Query: 36 AGPGSPTR-------SAPPGPAWRP--------PGPHLPPAPGQPRGASRRQVTYVRSGR 80
AGPG P P G A +P PG H PP P P+G +GR
Sbjct: 381 AGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPG------FTGR 434
Query: 81 RAPPGGGGS-------GTP-EPGCCAPRGRPRRKGPRWHIDLQPWAG 119
PG G+ G P +PG P G P +GP I Q G
Sbjct: 435 PGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPG 481
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/97 (31%), Positives = 34/97 (35%), Gaps = 30/97 (30%)
Query: 38 PGSPTRSAPPGPAWRP--PG------------PHLPPAPGQ-----------PRGASRRQ 72
PG P PGP P PG P LP APGQ P G +
Sbjct: 181 PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG 240
Query: 73 VTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRRKGPR 109
+ G PG G P PG PRG P GP+
Sbjct: 241 L----DGLPGAPGDKGESGP-PGVPGPRGEPGAVGPK 272
Score = 32.0 bits (71), Expect = 0.90
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG-GGGSGTP---- 92
PG P + PG PPGP PG P G + SG PG G G P
Sbjct: 360 PGLPGSAGLPGRRG-PPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHG 418
Query: 93 EPGCCAPRGRP 103
PG P+G P
Sbjct: 419 PPGPTGPKGEP 429
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/77 (35%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 35 RAGPGSPTRSAPPG-PAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPE 93
R PG+ PPG PG P P P GA T G P G G G P
Sbjct: 263 RGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPG 322
Query: 94 P-GCCAPRGRPRRKGPR 109
P G P G P G R
Sbjct: 323 PKGDRGPAGVPGLLGDR 339
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPG 63
PGSP + PPGP PPGP P APG
Sbjct: 512 PGSPGITGPPGPP-GPPGP--PGAPG 534
Score = 29.3 bits (64), Expect = 5.8
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 16/85 (18%)
Query: 35 RAGPGSPTRSAPPGPAWRPPG---------PHLPP---APGQPRGASRRQVTYVRSGRRA 82
+ G G P PGPA PPG P LP PGQP G G R
Sbjct: 99 KPGMGKPGLHGQPGPAG-PPGFSRMGKAGPPGLPGKVGPPGQP-GLRGEPGIRGDQGLRG 156
Query: 83 PPGGGGSGTPEPGCCAPRGRPRRKG 107
PP G G P P G+P +G
Sbjct: 157 PP--GPPGLPGPSGITIPGKPGAQG 179
Score = 29.3 bits (64), Expect = 5.8
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 35 RAG-PGSPTRSAPPGPAWRP--PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGG----- 86
RAG PG+ + PPG P GP PP P P GA +G P GG
Sbjct: 496 RAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAV 555
Query: 87 -GGSGTPEPG 95
G G P+ G
Sbjct: 556 LGKGGKPQFG 565
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/90 (35%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 28 RLCAELRRAGPGSPTR---SAPPGPAWRPPG-PHLPPAPGQPRGASRRQVTYVRSGRRAP 83
RL RRA +P APPGPA PPG P P AP G R+
Sbjct: 597 RLYCSGRRAPEDAPAARRPKAPPGPARAPPGQPAEPDAPRSSPGPGARE----------- 645
Query: 84 PGGGGSGTPEPGCCAPRGRPRRKGPRWHID 113
G GG+ TPE G RG + P +D
Sbjct: 646 EGAGGAATPEDG-AGGRGSEGSQSPGSSVD 674
Score = 35.0 bits (79), Expect = 0.11
Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 30 CAELRRAGPGSPTRSAPPGPAWRPPGPHLPPA--PGQPRGASRRQVTYVRSGRRAPPGGG 87
CA P P +APPG PPGP PPA P P RR+ Y APP
Sbjct: 706 CASRHDPPPRRP--AAPPG----PPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPP 759
Query: 88 GSGTPEPGCCAPRGRPRRKGP 108
P P P G GP
Sbjct: 760 PGHAPAPESPRP-GSGSGSGP 779
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/68 (38%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
PG P PP P RPPGP PG P GA ++R PPG G P P
Sbjct: 408 PGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAP----PFLR-----PPGMPGLRGPLPRLL 458
Query: 98 APRGRPRR 105
P P R
Sbjct: 459 PPGPPPGR 466
Score = 37.0 bits (84), Expect = 0.028
Identities = 25/62 (40%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 39 GSPTRSAPPGPA-WRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
G R PPGP RPPGP P PG P G R R PP G P PG
Sbjct: 452 GPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRG----PPPRLPPPAPPGIPPPRPGMM 507
Query: 98 AP 99
P
Sbjct: 508 RP 509
Score = 32.0 bits (71), Expect = 0.90
Identities = 23/66 (34%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCC 97
P P PPGP R P P LPP P P + R G PP G PG
Sbjct: 471 PPGPPPGLPPGPPPRGPPPRLPP-PAPP------GIPPPRPGMMRPPLVPPLGPAPPGLF 523
Query: 98 APRGRP 103
P P
Sbjct: 524 PPAPLP 529
Score = 28.9 bits (63), Expect = 7.6
Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 40 SPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTP--EPGCC 97
+P +S PP PP P PP P R PP G G P P
Sbjct: 392 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPP---------GPPTGLPPGPPPGAPPFL 442
Query: 98 APRGRPRRKGP 108
P G P +GP
Sbjct: 443 RPPGMPGLRGP 453
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 35 RAGPGSPTRSAPPGPAW--------RP-PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG 85
R G G P PGPA RP P PPAP + A+R RR PG
Sbjct: 24 RVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPG 83
Query: 86 --GGGSG---TPEPGCCAPRGRP 103
GGG G +P P PRG P
Sbjct: 84 PQGGGGGDIASPLPPALQPRGAP 106
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 35 RAGPGSPTRSAPPGPAW--------RP-PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG 85
R G G P PGPA RP P PPAP + A+R RR PG
Sbjct: 24 RVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPG 83
Query: 86 --GGGSG---TPEPGCCAPRGRP 103
GGG G +P P PRG P
Sbjct: 84 PQGGGGGDIASPLPPALQPRGAP 106
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 39.3 bits (90), Expect = 0.006
Identities = 31/83 (37%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 35 RAGPGSPTRSAPPGPAW--------RP-PGPHLPPAPGQPRGASRRQVTYVRSGRRAPPG 85
R G G P PGPA RP P PPAP + A+R RR PG
Sbjct: 24 RVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSALAAAQPRRRSPG 83
Query: 86 --GGGSG---TPEPGCCAPRGRP 103
GGG G +P P PRG P
Sbjct: 84 PQGGGGGDIASPLPPALQPRGAP 106
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 39.3 bits (90), Expect = 0.006
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 26 GLRLCAELRRAG-------PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRS 78
GL + E R G PG P R+ PG PGP P P RG + +
Sbjct: 1634 GLSIPGEQGRQGMKGDAGEPGLPGRTGTPGL----PGPPGPMGPPGDRGFTGKDGAMGPR 1689
Query: 79 GRRAPPGGGGSGTPEPGCCAPRGRPRRKG 107
G PPG GS PG P G+P + G
Sbjct: 1690 GPPGPPGSPGS----PGVTGPSGKPGKPG 1714
Score = 37.0 bits (84), Expect = 0.028
Identities = 28/68 (41%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 46 PPGPAWR--PPGPHLPPAPGQPRGAS--RRQVTYVRSGRRAPPG-GGGSGTPE-PGCCAP 99
PPGP PPGP PP P P G S Q G PG G +GTP PG P
Sbjct: 1611 PPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 1670
Query: 100 RGRPRRKG 107
G P +G
Sbjct: 1671 MGPPGDRG 1678
Score = 33.5 bits (75), Expect = 0.31
Identities = 26/73 (35%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS-GTPEPGC 96
PGS PGP RP P P G P G R PG G GT G
Sbjct: 1786 PGSAGARGEPGPGGRPGFPGTPGMQGPP-------------GERGLPGEKGERGT---GS 1829
Query: 97 CAPRGRPRRKGPR 109
PRG P GP+
Sbjct: 1830 SGPRGLPGPPGPQ 1842
Score = 32.7 bits (73), Expect = 0.53
Identities = 18/56 (32%), Positives = 21/56 (37%)
Query: 32 ELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGG 87
E R PGS PPGP RP + PG P Q + + PG G
Sbjct: 1844 ESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYPGSG 1899
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 46 PPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRR 105
PPGP PGP P PRG R + SG PPG G P PG P+G P
Sbjct: 1584 PPGP----PGPAGGPGAKGPRG--ERGI----SGAIGPPGPRGDIGP-PG---PQGPPGP 1629
Query: 106 KGP 108
+GP
Sbjct: 1630 QGP 1632
Score = 28.9 bits (63), Expect = 7.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 17/54 (31%)
Query: 37 GPGSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG 88
GP +R+ PPG PPGP PG+P SG R PPG G
Sbjct: 1840 GPQGESRTGPPGSTGSRGPPGP-----PGRPG----------NSGIRGPPGPPG 1878
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 39.3 bits (90), Expect = 0.006
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 26 GLRLCAELRRAG-------PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRS 78
GL + E R G PG P R+ PG PGP P P RG + +
Sbjct: 2798 GLSIPGEQGRQGMKGDAGEPGLPGRTGTPGL----PGPPGPMGPPGDRGFTGKDGAMGPR 2853
Query: 79 GRRAPPGGGGSGTPEPGCCAPRGRPRRKG 107
G PPG GS PG P G+P + G
Sbjct: 2854 GPPGPPGSPGS----PGVTGPSGKPGKPG 2878
Score = 37.0 bits (84), Expect = 0.028
Identities = 28/68 (41%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 46 PPGPAWR--PPGPHLPPAPGQPRGAS--RRQVTYVRSGRRAPPG-GGGSGTPE-PGCCAP 99
PPGP PPGP PP P P G S Q G PG G +GTP PG P
Sbjct: 2775 PPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834
Query: 100 RGRPRRKG 107
G P +G
Sbjct: 2835 MGPPGDRG 2842
Score = 33.5 bits (75), Expect = 0.31
Identities = 26/73 (35%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 38 PGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGS-GTPEPGC 96
PGS PGP RP P P G P G R PG G GT G
Sbjct: 2950 PGSAGARGEPGPGGRPGFPGTPGMQGPP-------------GERGLPGEKGERGT---GS 2993
Query: 97 CAPRGRPRRKGPR 109
PRG P GP+
Sbjct: 2994 SGPRGLPGPPGPQ 3006
Score = 32.7 bits (73), Expect = 0.53
Identities = 18/56 (32%), Positives = 21/56 (37%)
Query: 32 ELRRAGPGSPTRSAPPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGG 87
E R PGS PPGP RP + PG P Q + + PG G
Sbjct: 3008 ESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYPGSG 3063
Score = 30.4 bits (67), Expect = 2.6
Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 46 PPGPAWRPPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGGSGTPEPGCCAPRGRPRR 105
PPGP PGP P PRG R + SG PPG G P PG P+G P
Sbjct: 2748 PPGP----PGPAGGPGAKGPRG--ERGI----SGAIGPPGPRGDIGP-PG---PQGPPGP 2793
Query: 106 KGP 108
+GP
Sbjct: 2794 QGP 2796
Score = 28.9 bits (63), Expect = 7.6
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 17/54 (31%)
Query: 37 GPGSPTRSAPPGPAWR--PPGPHLPPAPGQPRGASRRQVTYVRSGRRAPPGGGG 88
GP +R+ PPG PPGP PG+P SG R PPG G
Sbjct: 3004 GPQGESRTGPPGSTGSRGPPGP-----PGRPG----------NSGIRGPPGPPG 3042
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,387,583
Number of Sequences: 37866
Number of extensions: 1136341
Number of successful extensions: 12333
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 853
Number of HSP's that attempted gapping in prelim test: 8189
Number of HSP's gapped (non-prelim): 3839
length of query: 366
length of database: 18,247,518
effective HSP length: 104
effective length of query: 262
effective length of database: 14,309,454
effective search space: 3749076948
effective search space used: 3749076948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.