Guide to the Human Genome
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Name: LRRC38 Sequence: fasta or formatted (408aa) NCBI GI: 239747236
Description:

PREDICTED: leucine rich repeat containing 38

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [408aa] PREDICTED: leucine rich repeat containing 38
alt prot [254aa] PREDICTED: leucine rich repeat containing 38, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         41           3
 C cysteine            2.0          8           1
 D aspartate           4.7         19           2
 E glutamate           5.1         21           2
 F phenylalanine       4.2         17           2
 G glycine             5.6         23           1
 H histidine           1.7          7           1
 I isoleucine          3.2         13           3
 K lysine              2.2          9           1
 L leucine            13.7         56           3
 M methionine          0.7          3           1
 N asparagine          3.7         15           3
 P proline             9.6         39           2
 Q glutamine           3.2         13           1
 R arginine           11.5         47           3
 S serine             10.5         43           2
 T threonine           1.5          6           1
 V valine              5.4         22           2
 W tryptophan          0.7          3           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: leucine rich repeat containing 38 
LRRC38                1.000   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.595   PREDICTED: leucine rich repeat containing 38, parti...
LRRC55                0.165   leucine rich repeat containing 55 
LRRC26                0.123   leucine rich repeat containing 26 
LRRC52                0.117   leucine rich repeat containing 52 
CPN2                  0.102   carboxypeptidase N, polypeptide 2, 83kD 
RTN4RL2               0.102   reticulon 4 receptor-like 2 
RTN4R                 0.089   reticulon 4 receptor precursor 
SLIT2                 0.088   slit homolog 2 
SLIT1                 0.088   slit homolog 1 
LRTM1                 0.085   leucine-rich repeats and transmembrane domains 1 [Ho...
ISLR                  0.085   immunoglobulin superfamily containing leucine-rich r...
ISLR                  0.085   immunoglobulin superfamily containing leucine-rich re...
LRTM2                 0.084   leucine-rich repeats and transmembrane domains 2 [Ho...
LRRC24                0.083   leucine rich repeat containing 24 
SLIT3                 0.079   slit homolog 3 
LRRC70                0.079   synleurin 
IGSF10                0.079   immunoglobulin superfamily, member 10 
ELFN2                 0.078   leucine rich repeat containing 62 
SLITRK6               0.075   slit and trk like 6 
ISLR2                 0.073   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.073   immunoglobulin superfamily containing leucine-rich ...
ISLR2                 0.073   immunoglobulin superfamily containing leucine-rich r...
ISLR2                 0.073   immunoglobulin superfamily containing leucine-rich ...
RTN4RL1               0.073   reticulon 4 receptor-like 1 
IGFALS                0.071   insulin-like growth factor binding protein, acid la...
IGFALS                0.071   insulin-like growth factor binding protein, acid labi...
LRRC15                0.070   leucine rich repeat containing 15 isoform a 
LRRC15                0.070   leucine rich repeat containing 15 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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