Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: B4GALNT4 Sequence: fasta or formatted (1039aa) NCBI GI: 40789265
Description:

beta 1,4-N-acetylgalactosaminyltransferase-transferase 4

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         93           3
 C cysteine            0.9          9           1
 D aspartate           6.2         64           2
 E glutamate           7.5         78           5
 F phenylalanine       4.6         48           2
 G glycine             8.0         83           3
 H histidine           2.7         28           2
 I isoleucine          1.3         14           1
 K lysine              2.7         28           2
 L leucine             9.8        102           8
 M methionine          1.6         17           1
 N asparagine          2.0         21           1
 P proline             9.0         94           3
 Q glutamine           3.8         39           1
 R arginine           10.3        107           2
 S serine              6.5         68           3
 T threonine           3.6         37           2
 V valine              6.3         65           2
 W tryptophan          1.7         18           1
 Y tyrosine            2.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta 1,4-N-acetylgalactosaminyltransferase-transfera... 
B4GALNT3              0.402   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
CSGALNACT1            0.028   chondroitin sulfate N-acetylgalactosaminyltransfera...
CSGALNACT1            0.028   chondroitin sulfate N-acetylgalactosaminyltransfera...
SAMD1                 0.025   sterile alpha motif domain containing 1 
CSGALNACT2            0.024   chondroitin sulfate N-acetylgalactosaminyltransferas...
CHSY1                 0.023   chondroitin sulfate synthase 1 
ASAP2                 0.021   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
C6orf132              0.018   PREDICTED: chromosome 6 open reading frame 132 [Hom...
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
C6orf132              0.018   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.018   PREDICTED: hypothetical protein LOC647024 
SYN1                  0.018   synapsin I isoform Ia 
SYN1                  0.018   synapsin I isoform Ib 
CHSY3                 0.017   chondroitin sulfate synthase 3 
WASF2                 0.017   WAS protein family, member 2 
CPSF6                 0.017   cleavage and polyadenylation specific factor 6, 68 ...
SFPQ                  0.016   splicing factor proline/glutamine rich (polypyrimidin...
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
SH3BP1                0.016   SH3-domain binding protein 1 
FLJ22184              0.016   PREDICTED: hypothetical protein LOC80164 
ESX1                  0.016   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
SF3A2                 0.016   splicing factor 3a, subunit 2 
DIAPH1                0.015   diaphanous 1 isoform 2 
DIAPH1                0.015   diaphanous 1 isoform 1 
PRB3                  0.015   proline-rich protein BstNI subfamily 3 precursor [H...
TAF4                  0.015   TBP-associated factor 4 
WIPF3                 0.015   WAS/WASL interacting protein family, member 3 [Homo...
SETD1B                0.015   SET domain containing 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press