Guide to the Human Genome
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Name: LOC100131102 Sequence: fasta or formatted (195aa) NCBI GI: 239749482
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {285aa} PREDICTED: hypothetical protein
alt prot {159aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.5         36           3
 C cysteine            0.5          1           1
 D aspartate           1.5          3           1
 E glutamate           3.1          6           1
 F phenylalanine       1.0          2           1
 G glycine            13.8         27           5
 H histidine           1.5          3           1
 I isoleucine          1.0          2           1
 K lysine              0.0          0           0
 L leucine             8.7         17           1
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline            21.0         41           3
 Q glutamine           3.6          7           1
 R arginine           12.8         25           3
 S serine              6.2         12           2
 T threonine           0.5          1           1
 V valine              5.6         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131102          0.939   PREDICTED: hypothetical protein 
LOC100131102          0.660   PREDICTED: hypothetical protein 
SAMD1                 0.112   sterile alpha motif domain containing 1 
NACA                  0.110   nascent polypeptide-associated complex alpha subuni...
WBP11                 0.099   WW domain binding protein 11 
CPSF6                 0.094   cleavage and polyadenylation specific factor 6, 68 ...
MEX3D                 0.088   ring finger and KH domain containing 1 
WAS                   0.086   Wiskott-Aldrich syndrome protein 
DIAPH1                0.086   diaphanous 1 isoform 2 
DIAPH1                0.086   diaphanous 1 isoform 1 
FMNL1                 0.086   formin-like 1 
ENAH                  0.086   enabled homolog isoform a 
ENAH                  0.086   enabled homolog isoform b 
COL22A1               0.086   collagen, type XXII, alpha 1 
TBKBP1                0.083   TBK1 binding protein 1 
FLJ22184              0.080   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.080   PREDICTED: hypothetical protein LOC80164 
GGN                   0.080   gametogenetin 
TAF4                  0.080   TBP-associated factor 4 
PDCD7                 0.080   programmed cell death 7 
LMTK3                 0.078   lemur tyrosine kinase 3 
WASF2                 0.078   WAS protein family, member 2 
FMN1                  0.075   formin 1 
FMN2                  0.075   formin 2 
BCORL1                0.075   BCL6 co-repressor-like 1 
SH3BP1                0.075   SH3-domain binding protein 1 
PRR12                 0.075   proline rich 12 
BZRAP1                0.072   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.072   peripheral benzodiazepine receptor-associated prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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