Guide to the Human Genome
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Search of human proteins with 169215887

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
         (191 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]          404   e-113
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]          404   e-113
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]          404   e-113
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       47   1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      46   2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    46   2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    46   2e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       45   3e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     43   1e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      42   2e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    42   3e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    42   3e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    42   3e-04
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    42   4e-04
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    42   4e-04
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    42   4e-04
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]            42   4e-04
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            41   5e-04
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            41   5e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    41   7e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    41   7e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    41   7e-04
gi|5803080 macrophage receptor with collagenous structure [Homo ...    41   7e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         40   0.001
gi|61699226 pulmonary surfactant-associated protein D precursor ...    40   0.001
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    40   0.001
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ...    40   0.001
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               40   0.001
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]        40   0.002
gi|182507165 thymus expressed gene 3-like [Homo sapiens]               40   0.002

>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
          Length = 191

 Score =  404 bits (1038), Expect = e-113
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
           MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV
Sbjct: 1   MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60

Query: 61  KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
           KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR
Sbjct: 61  KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120

Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
           AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR
Sbjct: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180

Query: 181 GQTSRWGRLAA 191
           GQTSRWGRLAA
Sbjct: 181 GQTSRWGRLAA 191


>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
          Length = 191

 Score =  404 bits (1038), Expect = e-113
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
           MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV
Sbjct: 1   MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60

Query: 61  KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
           KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR
Sbjct: 61  KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120

Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
           AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR
Sbjct: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180

Query: 181 GQTSRWGRLAA 191
           GQTSRWGRLAA
Sbjct: 181 GQTSRWGRLAA 191


>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
          Length = 191

 Score =  404 bits (1038), Expect = e-113
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
           MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV
Sbjct: 1   MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60

Query: 61  KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
           KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR
Sbjct: 61  KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120

Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
           AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR
Sbjct: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180

Query: 181 GQTSRWGRLAA 191
           GQTSRWGRLAA
Sbjct: 181 GQTSRWGRLAA 191


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 60  VKARGGWGEGLELGGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQ 117
           V  RG  G   + GG+GPTG      + GP+ P   +G    P  PG        G   +
Sbjct: 218 VGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGE 277

Query: 118 RPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTP 176
              AG+ G+R     GA G    +  +G +G + P+G  G  G  G   GP  P+G   P
Sbjct: 278 VGFAGSPGAR--GFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGE-AGPTGPMGAMGP 334

Query: 177 SCMRGQTSRWGRL 189
              RG     GRL
Sbjct: 335 LGPRGMPGERGRL 347



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 50/154 (32%), Positives = 60/154 (38%), Gaps = 24/154 (15%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--- 93
           P+G+        E G+  VP      RG  G+  E+G SGP G    A E G   P    
Sbjct: 619 PKGSSGDPGKPGEAGNAGVPGQ----RGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPT 674

Query: 94  --KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADP 151
             +G    P  PG G     QG        G  G R     G RG+       GERG +P
Sbjct: 675 GFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPR-----GERGN------PGERG-EP 722

Query: 152 --RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQT 183
              G  G+ G  G G GP+ P G   PS   G T
Sbjct: 723 GITGLPGEKGMAG-GHGPDGPKGSPGPSGTPGDT 755



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 56  PKAQVKARGGWGEG---LELGGSGPTGKARPASESGPLTP-----RKGASHTPEAPGVGR 107
           PK +V A G  GE      +G  GP G      E G L P     ++GA   P  PG   
Sbjct: 310 PKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMG 369

Query: 108 AFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGP 167
              + G++      G +G       GARG    +  +GE G  P G  G  G  GA    
Sbjct: 370 PLGIPGSSGFPGNPGMKGE--AGPTGARGPEGPQGQRGETG--PPGPVGSPGLPGAIGTD 425

Query: 168 ETP 170
            TP
Sbjct: 426 GTP 428



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 42/140 (30%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 53   PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
            P     +V   G  G+    G  GP G   P  E GP    +G +     PG   A   +
Sbjct: 1012 PAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGP----EGPAGNDGTPGRDGAVGER 1067

Query: 113  GTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGP 167
            G       AG  GS+        +GA G    R   G RG   P G AG  G  G   GP
Sbjct: 1068 GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGP-QGP 1126

Query: 168  ETPLGRHTPSCMRGQTSRWG 187
                G H     RGQ    G
Sbjct: 1127 RGDKGDHGDRGDRGQKGHRG 1146



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 45/165 (27%), Positives = 60/165 (36%), Gaps = 30/165 (18%)

Query: 37  PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR- 93
           P G   +   G++G  G P +       RG  G     G  GP G+  P    GP  P+ 
Sbjct: 100 PGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQG 159

Query: 94  ----KGASHTPEAP------------GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGS 137
                G    P AP            G+ R F  Q       ++G  GS+ G   G+ G 
Sbjct: 160 IDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDE-KSGL-GSQVGLMPGSVGP 217

Query: 138 GEAREAKG----ERGADPRGAAGDVGFGG-----AGTGPETPLGR 173
              R  +G    + GA P G  G+ G  G        GPE P G+
Sbjct: 218 VGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGK 262



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 73  GGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGW 130
           G SGP G A P    GP   T  +G    P  PGV      +G A  +   G  G +   
Sbjct: 438 GTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVP---GFKGEAGPKGEPGPHGIQ--G 492

Query: 131 CLGARGSGEAREAKGERG-------ADPRGAAGDVGFGGA--------GTGPETPLGRHT 175
            +G  G    R  +G+ G          RGA G+ GF G+          G   P+G   
Sbjct: 493 PIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSG 552

Query: 176 PSCMRGQTSRWG 187
           P   +G   R G
Sbjct: 553 PKGSQGDPGRPG 564



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 51/159 (32%), Positives = 62/159 (38%), Gaps = 25/159 (15%)

Query: 36  LPRGAKPSNLWGKEG-----GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESG 88
           LP    P    GK G     G P  V P      RG  GE  E G +G  G+   A   G
Sbjct: 679 LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHG 738

Query: 89  PLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG 148
           P  P KG+      PG      +QG   +R  AGT G +     G RG        GE+G
Sbjct: 739 PDGP-KGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPK-----GDRGG------IGEKG 786

Query: 149 ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
           A+  G AG+ G      G   PLG   P+   G+    G
Sbjct: 787 AE--GTAGNDG----ARGLPGPLGPPGPAGPTGEKGEPG 819



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 45/154 (29%), Positives = 53/154 (34%), Gaps = 19/154 (12%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKA-RGGWGE-------------GLELGGSGPTGKAR 82
           P    P  L G  G   +      K  RGG GE             GL  G  GP G A 
Sbjct: 752 PGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLP-GPLGPPGPAG 810

Query: 83  PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE 142
           P  E G   PR G    P + G   +    G       AG +G       G +G      
Sbjct: 811 PTGEKGEPGPR-GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGP--DGQPGVKGEPGEPG 867

Query: 143 AKGERGA-DPRGAAGDVGFGGAGTGPETPLGRHT 175
            KG+ G+  P+G AG  G  G    P    GR T
Sbjct: 868 QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGT 901


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 53/166 (31%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 36  LPRGAKPSNLWGKEGGHPVVPKAQVK----ARGGWGEGLELGGSGPTGKARPASESGPL- 90
           LP  A P    GK G   V           ARG  G   E G  GP G A P   +G   
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPG 704

Query: 91  -TPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA 149
               KG +  P APG   A  +QG   +R  AG  G +     G RG    + A G  G 
Sbjct: 705 NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK-----GDRGDAGPKGADGSPGK 759

Query: 150 D-------------PRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQ 182
           D             P GA GD G  G  +GP  P G       RG+
Sbjct: 760 DGVRGLTGPIGPPGPAGAPGDKGESGP-SGPAGPTGARGAPGDRGE 804



 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 59/179 (32%), Positives = 68/179 (37%), Gaps = 27/179 (15%)

Query: 32  QADLLPRGAKPSNLWGKEGGH----PVVPKAQVKARGGWGEGLELGGSGPTGKARPA--- 84
           + D  P+GA  S   GK+G      P+ P     A G  GE    G +GPTG AR A   
Sbjct: 745 RGDAGPKGADGSP--GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG-ARGAPGD 801

Query: 85  -SESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR-------------CGW 130
             E GP  P  G +  P A G   A    G A  +  AG  G                  
Sbjct: 802 RGEPGPPGPA-GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 860

Query: 131 CLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
             GARGS     A G  GA  R G  G  G  G   GP  P G+      RG+T   GR
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP-PGPPGPAGKEGGKGPRGETGPAGR 918



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 46/137 (33%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
           P+GA        E G P  P A     G  G+  E G  GP G A PA E G     +G 
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAV----GPAGKDGEAGAQGPPGPAGPAGERG----EQGP 636

Query: 97  SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAK---GERG----- 148
           + +P   G+       G A +    G  G      LGA G   AR  +   GERG     
Sbjct: 637 AGSPGFQGLPGPAGPPGEAGKPGEQGVPGD-----LGAPGPSGARGERGFPGERGVQGPP 691

Query: 149 --ADPRGAAGDVGFGGA 163
             A PRGA G  G  GA
Sbjct: 692 GPAGPRGANGAPGNDGA 708



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 46/163 (28%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 49  EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARP---------ASESGPLTPR-----K 94
           E G P  P     ARG  G     G  GPTG A P           E+GP  PR     +
Sbjct: 309 ERGRPGAP-GPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ 367

Query: 95  GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERG----A 149
           G    P  PG   A    G      + G +G+       GA G   AR   G +G     
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427

Query: 150 DPRGAAGDVGFGGA-----GTGPETPLGRHTPSCMRGQTSRWG 187
            P+G +G+ G  G+       G   P+G   P    G+  + G
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 46/139 (33%), Positives = 53/139 (38%), Gaps = 18/139 (12%)

Query: 59  QVKARGGWGEGLELGGSGPTGKARPASESGPL-----TPRKGASHTPEAPGV----GRAF 109
           Q  A+G  G+    G +GP G A PA   GP+        KGA  +   PG     G A 
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG 881

Query: 110 RV-----QGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGA 163
           RV      G A      G  G   G   G RG        GE G   P G AG+ G  GA
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGG--KGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939

Query: 164 GTGPETPLGRHTPSCMRGQ 182
             GP    G   P  + GQ
Sbjct: 940 -DGPAGAPGTPGPQGIAGQ 957



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 43/148 (29%), Positives = 51/148 (34%), Gaps = 24/148 (16%)

Query: 53   PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP--------RKGASHTPEAPG 104
            P  P       G  G   + GG GP G+  PA   G + P         KG+       G
Sbjct: 885  PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944

Query: 105  VGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGA 163
                   QG A QR   G  G R     G RG        GE G   P GA+G+      
Sbjct: 945  APGTPGPQGIAGQRGVVGLPGQR-----GERGFPGLPGPSGEPGKQGPSGASGE------ 993

Query: 164  GTGPETPLGRHTPSCMRGQTSRWGRLAA 191
              GP  P+G   P  + G     GR  A
Sbjct: 994  -RGPPGPMG---PPGLAGPPGESGREGA 1017



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 11/116 (9%)

Query: 64   GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
            G  G+  E G +GP G        GP+ P   +    E    G A  V G    R  AG 
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV-GPVGARGPAGP 1089

Query: 124  EGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGGAGTGPETPLG 172
            +G R     G  G    R  KG RG         P G+ G+ G  GA +GP  P G
Sbjct: 1090 QGPRGD--KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA-SGPAGPRG 1142



 Score = 34.3 bits (77), Expect = 0.067
 Identities = 47/154 (30%), Positives = 56/154 (36%), Gaps = 41/154 (26%)

Query: 63  RGGWGEGLELGGSGPTGKARPASE---SGPLTPR-----------------KGASHTPEA 102
           RGG G     G  G  G   PA E    GP  P+                 KG + +P +
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS 546

Query: 103 PGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG-------------SGEAREAKGERGA 149
           PG        G A Q  R G  G       GARG             +GE  +A GERG 
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPP-----GARGQAGVMGFPGPKGAAGEPGKA-GERGV 600

Query: 150 -DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQ 182
             P GA G  G  G   G + P G   P+  RG+
Sbjct: 601 PGPPGAVGPAGKDGE-AGAQGPPGPAGPAGERGE 633



 Score = 33.9 bits (76), Expect = 0.088
 Identities = 41/126 (32%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 53   PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
            PV P  +   RG  G     G  GP G   PA   GP  PR     T E    G      
Sbjct: 1056 PVGPAGKSGDRGETGPAGPAGPVGPVGARGPA---GPQGPRGDKGETGEQGDRGIKGHRG 1112

Query: 113  GTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAG-----TGP 167
             +  Q P  G  GS      G +G   A    G RG  P G+AG  G  G        GP
Sbjct: 1113 FSGLQGP-PGPPGSP-----GEQGPSGASGPAGPRG--PPGSAGAPGKDGLNGLPGPIGP 1164

Query: 168  ETPLGR 173
              P GR
Sbjct: 1165 PGPRGR 1170



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 43/152 (28%), Positives = 52/152 (34%), Gaps = 27/152 (17%)

Query: 61  KARGGWGEGLELGGSGPTGKARP------------------ASESGPLTPRKGASHTPEA 102
           K+ GG      +G SGP G   P                     SGP+ PR G    P  
Sbjct: 170 KSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-GPPGPPGK 228

Query: 103 PGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFG 161
            G        G   +R   G +G+R     G  G+      KG RG +   GA GD G  
Sbjct: 229 NGDDGEAGKPGRPGERGPPGPQGAR-----GLPGTAGLPGMKGHRGFSGLDGAKGDAGPA 283

Query: 162 GAGTGPETPLGRHTPSCM--RGQTSRWGRLAA 191
           G    P +P     P  M  RG     GR  A
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGA 315


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 49/159 (30%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL-----T 91
           P+GA        E G P  P      RG  G+  E G +GP G A PA E G       +
Sbjct: 607 PKGANGEPGKAGEKGLPGAPGL----RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 662

Query: 92  PRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD- 150
             +G    P  PG G     QG   +    G  G R     G RG    R + G +G   
Sbjct: 663 GFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-----GERGFPGERGSPGAQGLQG 717

Query: 151 PRGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
           PRG  G  G  G    +GP  P G   P  ++G     G
Sbjct: 718 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 756



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 45/144 (31%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 53  PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
           P+ P+     RG  G     G  G  G+  PA   GP+ P  G    P  PG   A    
Sbjct: 322 PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG----PGFPGAPGAKGEA 377

Query: 113 GTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGA----- 163
           G    R   G +G R     G  GS     A G  G D     +G+AG  G  GA     
Sbjct: 378 GPTGARGPEGAQGPRGE--PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 435

Query: 164 GTGPETPLGRHTPSCMRGQTSRWG 187
             GP  P G   P   +GQT   G
Sbjct: 436 PRGPPGPQGATGPLGPKGQTGEPG 459



 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 51/163 (31%), Positives = 60/163 (36%), Gaps = 34/163 (20%)

Query: 42  PSNLWGKEGG-HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTP 100
           P+   G++G   P  P     ARG  GE  E G  GP G A P           GA   P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP----------PGADGQP 845

Query: 101 EAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERGADPRGAAGDVG 159
            A G       QG A Q+  AG  G +      G +G       KG RGA  +G  G  G
Sbjct: 846 GAKG------EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA--QGPPGATG 897

Query: 160 FGGAG--------------TGPETPLGRHTPSCMRGQTSRWGR 188
           F GA                GP  P G+  P   RG +   GR
Sbjct: 898 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR 940



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 37  PRGAK-PSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
           P GA  P    G  G  G P V    +  RG  G   + G  G  GK   A E GP  P+
Sbjct: 214 PAGAPGPQGFQGNPGEPGEPGV-SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272

Query: 94  --KGASHTPEAPGVGRAFRVQGTACQRPRAGTEG----SRCGWCLGARGSGEAREAKGER 147
             +G   TP  PGV       G    +  AG  G    S      G+ G    R   GER
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 332

Query: 148 G-ADPRGAAGDVGFGG--AGTGPETPLG 172
           G   P GAAG  G  G     GP  P+G
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVG 360



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
           PRG  P    G  G  P+ PK Q    G  G   E G  G  G A P    GP       
Sbjct: 436 PRG--PPGPQGATG--PLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR 491

Query: 97  SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG----ADPR 152
               E  GVG      G   +R   G  G       G  G    + A GERG    A P+
Sbjct: 492 GARGEPGGVGPI----GPPGERGAPGNRGFP-----GQDGLAGPKGAPGERGPSGLAGPK 542

Query: 153 GAAGDVGFGG-----------AGTGPETPLGRHTPSCMRGQTSRWG 187
           GA GD G  G              G   P G+  PS   G+  R G
Sbjct: 543 GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 588



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 25/139 (17%)

Query: 73   GGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGW 130
            G SGP G+A      GP  P   KG        G       QG A QR   G  G R   
Sbjct: 933  GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR--- 989

Query: 131  CLGARG-------SGE-----AREAKGERG----ADPRGAAGDVGFGG--AGTGPETPLG 172
              G RG       SGE     A  A G+RG      P G  G  G  G     G + P G
Sbjct: 990  --GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047

Query: 173  RHTPSCMRGQTSRWGRLAA 191
            R   + ++G     G + A
Sbjct: 1048 RDGAAGVKGDRGETGAVGA 1066



 Score = 35.0 bits (79), Expect = 0.039
 Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 67  GEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTE 124
           GEG + G  G  G+A      GP   R   G   +P A G+     + GT       G  
Sbjct: 675 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 734

Query: 125 GSRCGWCLGARGSGEAREAKGERGA----DPRGAAGDVGFGG--------AGTGPETPLG 172
           G       GA+G    +   GERGA     P+G  GDVG  G         G G   P+G
Sbjct: 735 GP--AGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 792

Query: 173 RHTPSCMRGQTSRWG 187
              P+   G+    G
Sbjct: 793 PPGPAGANGEKGEVG 807



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 60   VKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFR-VQGTACQR 118
            V A G  G     G +GPTGK     E+G   P       P  P   R  +  QG    +
Sbjct: 1064 VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM-----GPSGPAGARGIQGPQGPRGDK 1118

Query: 119  PRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAG--TGPETPLGRHTP 176
              AG  G R     G +G       +G  G  P G +GD G  G    +GP  P G   P
Sbjct: 1119 GEAGEPGER-----GLKGHRGFTGLQGLPG--PPGPSGDQGASGPAGPSGPRGPPGPVGP 1171

Query: 177  S 177
            S
Sbjct: 1172 S 1172



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 56   PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTA 115
            P      +G  GE    G  GP+G A      GP  PR       E PG       +G  
Sbjct: 1078 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGE-PG------ERGLK 1130

Query: 116  CQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--AGTGPETPLG 172
              R   G +G       G  G    + A G  G + PRG  G VG  G     G   P+G
Sbjct: 1131 GHRGFTGLQG-----LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1185

Query: 173  RHTPSCMRGQTSRWG 187
               P    G+T   G
Sbjct: 1186 PPGPRGRSGETGPAG 1200



 Score = 32.3 bits (72), Expect = 0.25
 Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 31/146 (21%)

Query: 72  LGGSGPTGKARPASESGPLTPR--------------------------KGASHTPEAPGV 105
           +G  GP G   PA E GP   R                           G    P  PG+
Sbjct: 116 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 175

Query: 106 GRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGG-- 162
           G  F  Q       +AG  G++ G   G  G    R   G  GA  P+G  G+ G  G  
Sbjct: 176 GGNFAAQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 233

Query: 163 AGTGPETPLGRHTPSCMRGQTSRWGR 188
             +GP  P G   P    G     G+
Sbjct: 234 GVSGPMGPRGPPGPPGKPGDDGEAGK 259


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 49/159 (30%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL-----T 91
           P+GA        E G P  P      RG  G+  E G +GP G A PA E G       +
Sbjct: 538 PKGANGEPGKAGEKGLPGAPGL----RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 593

Query: 92  PRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD- 150
             +G    P  PG G     QG   +    G  G R     G RG    R + G +G   
Sbjct: 594 GFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-----GERGFPGERGSPGAQGLQG 648

Query: 151 PRGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
           PRG  G  G  G    +GP  P G   P  ++G     G
Sbjct: 649 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 687



 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 45/144 (31%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 53  PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
           P+ P+     RG  G     G  G  G+  PA   GP+ P  G    P  PG   A    
Sbjct: 253 PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG----PGFPGAPGAKGEA 308

Query: 113 GTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGA----- 163
           G    R   G +G R     G  GS     A G  G D     +G+AG  G  GA     
Sbjct: 309 GPTGARGPEGAQGPRGE--PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 366

Query: 164 GTGPETPLGRHTPSCMRGQTSRWG 187
             GP  P G   P   +GQT   G
Sbjct: 367 PRGPPGPQGATGPLGPKGQTGEPG 390



 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 51/163 (31%), Positives = 60/163 (36%), Gaps = 34/163 (20%)

Query: 42  PSNLWGKEGG-HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTP 100
           P+   G++G   P  P     ARG  GE  E G  GP G A P           GA   P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP----------PGADGQP 776

Query: 101 EAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERGADPRGAAGDVG 159
            A G       QG A Q+  AG  G +      G +G       KG RGA  +G  G  G
Sbjct: 777 GAKG------EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA--QGPPGATG 828

Query: 160 FGGAG--------------TGPETPLGRHTPSCMRGQTSRWGR 188
           F GA                GP  P G+  P   RG +   GR
Sbjct: 829 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR 871



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 37  PRGAK-PSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
           P GA  P    G  G  G P V    +  RG  G   + G  G  GK   A E GP  P+
Sbjct: 145 PAGAPGPQGFQGNPGEPGEPGV-SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203

Query: 94  --KGASHTPEAPGVGRAFRVQGTACQRPRAGTEG----SRCGWCLGARGSGEAREAKGER 147
             +G   TP  PGV       G    +  AG  G    S      G+ G    R   GER
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 263

Query: 148 G-ADPRGAAGDVGFGG--AGTGPETPLG 172
           G   P GAAG  G  G     GP  P+G
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVG 291



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 37  PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
           PRG  P    G  G  P+ PK Q    G  G   E G  G  G A P    GP       
Sbjct: 367 PRG--PPGPQGATG--PLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR 422

Query: 97  SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG----ADPR 152
               E  GVG      G   +R   G  G       G  G    + A GERG    A P+
Sbjct: 423 GARGEPGGVGPI----GPPGERGAPGNRGFP-----GQDGLAGPKGAPGERGPSGLAGPK 473

Query: 153 GAAGDVGFGG-----------AGTGPETPLGRHTPSCMRGQTSRWG 187
           GA GD G  G              G   P G+  PS   G+  R G
Sbjct: 474 GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 519



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 25/139 (17%)

Query: 73  GGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGW 130
           G SGP G+A      GP  P   KG        G       QG A QR   G  G R   
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR--- 920

Query: 131 CLGARG-------SGE-----AREAKGERG----ADPRGAAGDVGFGG--AGTGPETPLG 172
             G RG       SGE     A  A G+RG      P G  G  G  G     G + P G
Sbjct: 921 --GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 978

Query: 173 RHTPSCMRGQTSRWGRLAA 191
           R   + ++G     G + A
Sbjct: 979 RDGAAGVKGDRGETGAVGA 997



 Score = 35.0 bits (79), Expect = 0.039
 Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 67  GEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTE 124
           GEG + G  G  G+A      GP   R   G   +P A G+     + GT       G  
Sbjct: 606 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 665

Query: 125 GSRCGWCLGARGSGEAREAKGERGA----DPRGAAGDVGFGG--------AGTGPETPLG 172
           G       GA+G    +   GERGA     P+G  GDVG  G         G G   P+G
Sbjct: 666 GP--AGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 723

Query: 173 RHTPSCMRGQTSRWG 187
              P+   G+    G
Sbjct: 724 PPGPAGANGEKGEVG 738



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 60   VKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFR-VQGTACQR 118
            V A G  G     G +GPTGK     E+G   P       P  P   R  +  QG    +
Sbjct: 995  VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM-----GPSGPAGARGIQGPQGPRGDK 1049

Query: 119  PRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAG--TGPETPLGRHTP 176
              AG  G R     G +G       +G  G  P G +GD G  G    +GP  P G   P
Sbjct: 1050 GEAGEPGER-----GLKGHRGFTGLQGLPG--PPGPSGDQGASGPAGPSGPRGPPGPVGP 1102

Query: 177  S 177
            S
Sbjct: 1103 S 1103



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 56   PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTA 115
            P      +G  GE    G  GP+G A      GP  PR       E PG       +G  
Sbjct: 1009 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGE-PG------ERGLK 1061

Query: 116  CQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--AGTGPETPLG 172
              R   G +G       G  G    + A G  G + PRG  G VG  G     G   P+G
Sbjct: 1062 GHRGFTGLQG-----LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1116

Query: 173  RHTPSCMRGQTSRWG 187
               P    G+T   G
Sbjct: 1117 PPGPRGRSGETGPAG 1131



 Score = 32.3 bits (72), Expect = 0.25
 Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 31/146 (21%)

Query: 72  LGGSGPTGKARPASESGPLTPR--------------------------KGASHTPEAPGV 105
           +G  GP G   PA E GP   R                           G    P  PG+
Sbjct: 47  VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 106

Query: 106 GRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGG-- 162
           G  F  Q       +AG  G++ G   G  G    R   G  GA  P+G  G+ G  G  
Sbjct: 107 GGNFAAQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 164

Query: 163 AGTGPETPLGRHTPSCMRGQTSRWGR 188
             +GP  P G   P    G     G+
Sbjct: 165 GVSGPMGPRGPPGPPGKPGDDGEAGK 190


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 18/186 (9%)

Query: 12  GKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGE--- 68
           G+   GP       G R V  AD + RG K +     E G P   K  +  +G  GE   
Sbjct: 776 GQGPPGPQGPIGYPGPRGVKGADGI-RGLKGTKGEKGEDGFPGF-KGDMGIKGDRGEIGP 833

Query: 69  ---GLELGGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
                E G  GP G+  P  + GPL P   KG    P  PG       +G+       G 
Sbjct: 834 PGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGA 893

Query: 124 EGSRCGWCL----GARGSGEAREAKGERGADPRGAAGDVGFGG--AGTGPETPLGRHTPS 177
            G + G       G RG       +GERG  PRG  G  G  G   G GP  P G   P+
Sbjct: 894 NGEKGGRGTPGKPGPRGQRGPTGPRGERG--PRGITGKPGPKGNSGGDGPAGPPGERGPN 951

Query: 178 CMRGQT 183
             +G T
Sbjct: 952 GPQGPT 957



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 41/138 (29%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 56   PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQG 113
            PK  +   G  G   E GG G  GK  P  + GP  PR  +G       PG        G
Sbjct: 881  PKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDG 940

Query: 114  TACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGAGTGPET 169
             A      G  G +     G  G    +   G  G D      G  G+ GF G  TGP  
Sbjct: 941  PAGPPGERGPNGPQ-----GPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 994

Query: 170  PLGRHTPSCMRGQTSRWG 187
            P G   P    G+T   G
Sbjct: 995  PPGVVGPQGPTGETGPMG 1012



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 17/143 (11%)

Query: 36   LPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKG 95
            LP  A P    G++G    + +   K  G  G+  E G  GPTG   P  + GP     G
Sbjct: 1142 LPGPAGPVGPPGEDGDKGEIGEPGQK--GSKGDKGEQGPPGPTGPQGPIGQPGP----SG 1195

Query: 96   ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG----ADP 151
            A   P   G    F  +G    R   G  G      +G +G       KGE G      P
Sbjct: 1196 ADGEPGPRGQQGLFGQKGDEGPRGFPGPPGP-----VGLQGLPGPPGEKGETGDVGQMGP 1250

Query: 152  RGAAGDVGFGGA--GTGPETPLG 172
             G  G  G  GA    GP+ P G
Sbjct: 1251 PGPPGPRGPSGAPGADGPQGPPG 1273



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 43/140 (30%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 54  VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP-----LTPRKGASHTPEAPG-VGR 107
           V P+ +    G  G     G  GP G   P  E GP     L    GA   P  PG  G 
Sbjct: 711 VGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP 770

Query: 108 AFRVQGTACQRPRA--GTEGSRCGWCLGARGSGEAREAKGERGADP-RGAAGDVGFGG-- 162
                G     P+   G  G R     GA G    +  KGE+G D   G  GD+G  G  
Sbjct: 771 PGEKGGQGPPGPQGPIGYPGPR--GVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDR 828

Query: 163 AGTGPETPLGRHTPSCMRGQ 182
              GP  P G   P   +G+
Sbjct: 829 GEIGPPGPRGEDGPEGPKGR 848



 Score = 34.3 bits (77), Expect = 0.067
 Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 26/168 (15%)

Query: 42   PSNLWGKEG-----GHP-----VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL- 90
            P+ L GK+G     G P       P   +  +G  G     G +G  G+  PA  +GP+ 
Sbjct: 1043 PAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIG 1102

Query: 91   -TPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG- 148
               R G    P   G   A   +G      R G +G      +G  G        GE G 
Sbjct: 1103 IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGP-----VGLPGPAGPVGPPGEDGD 1157

Query: 149  ----ADP--RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWGR 188
                 +P  +G+ GD G  G    TGP+ P+G+  PS   G+    G+
Sbjct: 1158 KGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ 1205



 Score = 31.2 bits (69), Expect = 0.57
 Identities = 45/150 (30%), Positives = 56/150 (37%), Gaps = 14/150 (9%)

Query: 49   EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL--TPRKGASHTPEAPGVG 106
            E G P +P  +    G  GE  E G SGP+G A P    GP      KG+      PG  
Sbjct: 1289 EAGEPGLP-GEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDP 1347

Query: 107  RAFRVQGTACQRPRAGTEG-----SRCGWCLGARGSGEAREAKGERG----ADPRGAAGD 157
                  G A Q    G +G      + G   G  G        G+RG    A P G  G+
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTG-SPGPTGEPGPSGPPGKRGPPGPAGPEGRQGE 1406

Query: 158  VGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
             G  G   G E P G+  P   +G   + G
Sbjct: 1407 KGAKGE-AGLEGPPGKTGPIGPQGAPGKPG 1435



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 17   GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEG--------GHP-----VVPKAQVKAR 63
            GPV +Q + G       D  P    P  L G +G        GHP     + P  +   +
Sbjct: 1444 GPVGEQGLPGS---PGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK 1500

Query: 64   GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
            G  G     G SGP G+      SGP+ P  G    P  PG   A    G    +  AG 
Sbjct: 1501 GDRGLPGPQGSSGPKGEQGITGPSGPIGP-PGPPGLPGPPGPKGAKGSSGPTGPKGEAGH 1559

Query: 124  EG 125
             G
Sbjct: 1560 PG 1561



 Score = 29.3 bits (64), Expect = 2.2
 Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 33/125 (26%)

Query: 72   LGGSGPTGKARPASESGPLTP-----------------RKGASHTPEAPGVGRAFRVQGT 114
            +G  GPTG+  P  E G   P                  KG       PG      ++G 
Sbjct: 999  VGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGF 1058

Query: 115  ACQRPRAGTEGSRCGWCLGARGS-------GEAREAKGERGADPRGAAGDVGFGGAGTGP 167
               R   G  G+     LG +G+       G A  + GERG  P GAAG +G  G   GP
Sbjct: 1059 PGDRGLPGPVGA-----LGLKGNEGPPGPPGPA-GSPGERG--PAGAAGPIGIPGR-PGP 1109

Query: 168  ETPLG 172
            + P G
Sbjct: 1110 QGPPG 1114


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 45/135 (33%), Positives = 50/135 (37%), Gaps = 11/135 (8%)

Query: 63  RGGWGEGLELGGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPR 120
           RG  G   E G +GPTG       SGP  P   KG      A G        G   +R  
Sbjct: 588 RGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGA 647

Query: 121 AGTEGSR-------CGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGGAGTGPETPLG 172
           AG  G +           +G  G   AR A G  GA  P GA GD G  GA  GP  P G
Sbjct: 648 AGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGA-AGPAGPAG 706

Query: 173 RHTPSCMRGQTSRWG 187
                  RG+    G
Sbjct: 707 PRGSPGERGEVGPAG 721



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 52/150 (34%), Positives = 62/150 (41%), Gaps = 26/150 (17%)

Query: 37  PRG-AKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP--R 93
           P G A P+   G+ G      K +  A+G  GE   +G +GP G A PA  +GP  P   
Sbjct: 722 PNGFAGPAGAAGQPGA-----KGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGS 776

Query: 94  KGASHTPEAPGV-GRAFR--------VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAK 144
           +G    P   G  G A R        + G       AG EG R     G RG        
Sbjct: 777 RGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR-----GPRGDQGPVGRT 831

Query: 145 GERGA-DPRGAAGDVG-FGGAGTG--PETP 170
           GE GA  P G AG+ G  G AGT   P TP
Sbjct: 832 GEVGAVGPPGFAGEKGPSGEAGTAGPPGTP 861



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 46/161 (28%), Positives = 56/161 (34%), Gaps = 27/161 (16%)

Query: 49  EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP-----RKGASHTPEAP 103
           E G P     Q  ARG  GE   +G  GP G        GP+ P       G    P AP
Sbjct: 206 ENGTP----GQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 261

Query: 104 GVGRAFRVQGTACQRPRAGTEGS----RCGWCLGARGSGEAREAKGERGA---------- 149
           G        G A     AG  G          +G  G+  A    G +GA          
Sbjct: 262 GPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAP 321

Query: 150 ---DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
               PRG  G VG  GA TG    +G   P+  +G++   G
Sbjct: 322 GLPGPRGIPGPVGAAGA-TGARGLVGEPGPAGSKGESGNKG 361



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 37  PRGAK-PSNLWGKEGGHPVVPK-AQVKARGGWGEGLELGGSGPTGKARPASESGPLTP-- 92
           PRG   P    G  G   +V +     ++G  G   E G +GP G   P+ E G   P  
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNG 385

Query: 93  RKGASHTPEAPGVGRAFRVQGTACQRPRAGT---EGSRCGWCLGARGSGEAREAKGERG- 148
             G++  P  PG+  +   +G      RAG     GSR     GA G    R   G+ G 
Sbjct: 386 EAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSR-----GASGPAGVRGPNGDAGR 440

Query: 149 ------ADPRGAAGDVGFGGAGTGPETPLG 172
                   PRG  G  G  G   G E P+G
Sbjct: 441 PGEPGLMGPRGLPGSPGNIGP-AGKEGPVG 469



 Score = 35.8 bits (81), Expect = 0.023
 Identities = 43/135 (31%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 56  PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTA 115
           P      RG  GE  E+G +GP G A PA  +G    + GA     A G      V G  
Sbjct: 701 PAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG----QPGAKGERGAKGPKGENGVVGPT 756

Query: 116 CQRPRAGTEG-SRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPETPLGR 173
                AG  G +      G+RG G      G  GA  R G  G  G  G   GP  P G+
Sbjct: 757 GPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGP-PGPPGPAGK 815

Query: 174 HTPSCMRGQTSRWGR 188
                 RG     GR
Sbjct: 816 EGLRGPRGDQGPVGR 830



 Score = 32.0 bits (71), Expect = 0.33
 Identities = 37/137 (27%), Positives = 44/137 (32%), Gaps = 10/137 (7%)

Query: 56  PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQG 113
           P      RG  G     G +GP G      E GP  P    G +     PG       +G
Sbjct: 686 PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKG 745

Query: 114 TACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGGAG--TGPETP 170
              +    G  G      +GA G        G  G+    G  G  GF GA   TGP  P
Sbjct: 746 PKGENGVVGPTGP-----VGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800

Query: 171 LGRHTPSCMRGQTSRWG 187
            G   P    G   + G
Sbjct: 801 SGISGPPGPPGPAGKEG 817



 Score = 31.6 bits (70), Expect = 0.43
 Identities = 51/183 (27%), Positives = 61/183 (33%), Gaps = 32/183 (17%)

Query: 39  GAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPA------------ 84
           G  P  L G  G  G    P  Q   +G  GE  E G +GP G   PA            
Sbjct: 89  GPGPMGLMGPRGPPGAAGAPGPQ-GFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHP 147

Query: 85  ------SESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR----CGWCL 132
                  E G + P+  +G   TP  PG        G    + + G  G +         
Sbjct: 148 GKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGEN 207

Query: 133 GARGSGEAREAKGERG----ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
           G  G   AR   GERG      P GA G  G  G   GP  P+G   P    G     G 
Sbjct: 208 GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP-VGPAGPIGSAGPPGFPGAPGPKGE 266

Query: 189 LAA 191
           + A
Sbjct: 267 IGA 269



 Score = 30.4 bits (67), Expect = 0.97
 Identities = 44/158 (27%), Positives = 48/158 (30%), Gaps = 29/158 (18%)

Query: 37   PRGAKPSNLWGKEGGH-PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-- 93
            P    P    G  G H PV P  +   RG      E G SGP G A      GP  P+  
Sbjct: 951  PGNIGPVGAAGAPGPHGPVGPAGKHGNRG------ETGPSGPVGPAGAVGPRGPSGPQGI 1004

Query: 94   ---------KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAK 144
                     KG    P   G      + G A      G  GS     +G  G        
Sbjct: 1005 RGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGS-----VGPAGPRGPAGPS 1059

Query: 145  GERGADPR----GAAGDVGFGG--AGTGPETPLGRHTP 176
            G  G D R    G  G  G  G     GP  P G   P
Sbjct: 1060 GPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGP 1097


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 63  RGGWGEGLELGGSGPTGKARPASESG-PLTP-RKGASHTPEAPGVGRAFRVQGTACQRPR 120
           RGG GE  + G  G  G      E+G P  P  KG      +PG   A  + G A +R  
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487

Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGAGTGP 167
            G  G       G  G    +   GERGA     PRGAAG+ G  G   GP
Sbjct: 488 PGFRGPA-----GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP 533



 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 42/128 (32%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 63  RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAG 122
           +G  GE    G  G  GK  P   +GP+ P  G +  P   G G A  + G A  R   G
Sbjct: 740 KGDKGEPGGPGADGVPGKDGPRGPTGPIGP-PGPAGQPGDKGEGGAPGLPGIAGPRGSPG 798

Query: 123 TEGSR-----CGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGG--AGTGPETPLGRH 174
             G        G+  GA G       KGERGA   +G  G  G  G   G+GP  P G  
Sbjct: 799 ERGETGPPGPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG-- 855

Query: 175 TPSCMRGQ 182
            P  ++G+
Sbjct: 856 -PQGVKGE 862



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 47/142 (33%), Positives = 54/142 (38%), Gaps = 15/142 (10%)

Query: 42  PSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP------- 92
           PS   G+ G  G P  PK    A G  GE    GG GP G      E+GP  P       
Sbjct: 568 PSGPRGQPGVMGFPG-PKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPG 626

Query: 93  -RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERGAD 150
             KG +  P   G+       G   +  + G  G +      GA G      A GERG  
Sbjct: 627 GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG-- 684

Query: 151 PRGAAGDVGFGGAGTGPETPLG 172
           P G AG  G  G G GP  P G
Sbjct: 685 PPGLAGAPGLRG-GAGPPGPEG 705



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 47  GKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPG 104
           G+ GG     K +  A G  GEG   G +GP G + PA   GP  +   +G+   P A G
Sbjct: 819 GEPGG-----KGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG 873

Query: 105 VGRAFRVQGTACQRPRAGTEG-SRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
              A  + G        G  G S      G  G      A G  G + P+G AG  G  G
Sbjct: 874 FPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKG 933

Query: 163 AGTGPETPLGRHTPSCMRGQTSRWG 187
           +  G + P G   P  + G T   G
Sbjct: 934 S-PGAQGPPGAPGPLGIAGITGARG 957



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 44/143 (30%), Positives = 54/143 (37%), Gaps = 19/143 (13%)

Query: 51   GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESG---PLTPRKGASHTPEAPGVGR 107
            GHP  P   V   G  G+  E G +GP G   PA   G   P  PR     T E    G 
Sbjct: 1047 GHPG-PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAG- 1104

Query: 108  AFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--AG 164
               ++G    R   G  G+      G+ G    + A G  G A PRG  G  G  G    
Sbjct: 1105 ---IKG---HRGFPGNPGAP-----GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGT 1153

Query: 165  TGPETPLGRHTPSCMRGQTSRWG 187
            +G   P+G   P   RG+    G
Sbjct: 1154 SGHPGPIGPPGPRGNRGERGSEG 1176



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 26/146 (17%)

Query: 37  PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL---- 90
           P  A P    G  G  GHP  P +    +G  GE  + G SGP G       SGP     
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSP-GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDG 231

Query: 91  ----TPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
                 R G    P  PG+     + G    +   G +G       G +G   A   KGE
Sbjct: 232 ESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRN-----GEKGETGAPGLKGE 286

Query: 147 RG----------ADPRGAAGDVGFGG 162
            G            PRGA G+ G  G
Sbjct: 287 NGLPGENGAPGPMGPRGAPGERGRPG 312



 Score = 33.5 bits (75), Expect = 0.11
 Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 22/131 (16%)

Query: 62  ARGGWGEGLELGGSGPTGKARPAS---ESGPLTPR--KGASHTPEAPGVGRAFRVQGTAC 116
           A GG G+    G  GP G A        +GP  P   KGA+  P  PG      +QG   
Sbjct: 670 APGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPG 729

Query: 117 QRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
           +R              G  GS   +  KGE G    GA G  G  G   GP  P+G   P
Sbjct: 730 ER--------------GGLGSPGPKGDKGEPGGP--GADGVPGKDGP-RGPTGPIGPPGP 772

Query: 177 SCMRGQTSRWG 187
           +   G     G
Sbjct: 773 AGQPGDKGEGG 783



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 43/146 (29%), Positives = 55/146 (37%), Gaps = 13/146 (8%)

Query: 33  ADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKA-RPASESGPLT 91
           A+ LP  A      G  G  P  P      +G  GE    G +GP G A  P  +  P  
Sbjct: 475 ANGLPGAAGERGAPGFRG--PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG 532

Query: 92  P-RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD 150
           P  +G   +P  PG        G+  +  R G  G       G RG        G +G D
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS-----GPRGQPGVMGFPGPKGND 587

Query: 151 PRGAAGDVGFGGA--GTGPETPLGRH 174
             GA G  G  G   G GP+ P G++
Sbjct: 588 --GAPGKNGERGGPGGPGPQGPPGKN 611


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 57  KAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGT 114
           + +V   G  GE    G  GP G+  P  + GP  L   KG    P  PG       +G+
Sbjct: 670 RGEVGVPGSRGED---GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 726

Query: 115 ACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGG--AGT 165
                  G  G +     GARG       +GERG         PRGA G  G  G   G 
Sbjct: 727 LGFPGFPGASGEK-----GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 781

Query: 166 GPETPLG 172
           GP  P G
Sbjct: 782 GPHGPPG 788



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)

Query: 42  PSNLWGKEG--------GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLT 91
           P  L G++G        G+P    PK  +   G  G   E G  G +GK+ P  E GP  
Sbjct: 699 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 758

Query: 92  PR-----KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
           PR     +GA+    A G        G   +R   G +G       G  G        G+
Sbjct: 759 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-----GFPGPKGPPGPPGK 813

Query: 147 RGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
            G     G  G+VGF G  TGP  P G   P    G+T   G
Sbjct: 814 DGLPGHPGQRGEVGFQGK-TGPPGPPGVVGPQGAAGETGPMG 854



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 17   GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGH-------PVVPKAQVKARGGWGEG 69
            GPV Q    G      AD  P    P   +G +G         P  P       G  GE 
Sbjct: 1028 GPVGQPGAAG------ADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1081

Query: 70   LELGGSGPTGKARPASESGPLTPRKGASHTPEAP--GVGRAFRVQGTACQRPRAGTEGSR 127
             E G  GP G   P    GP  P    +  P+ P  GVG      G   ++   G  GS 
Sbjct: 1082 GETGDVGPMGPPGPPGPRGPAGP--NGADGPQGPPGGVGNL----GPPGEKGEPGESGSP 1135

Query: 128  CGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
                 G +G    +  +GERG   +G +G  G  G   GP+ P G   P
Sbjct: 1136 -----GIQGEPGVKGPRGERG--EKGESGQPGEPGP-PGPKGPTGDDGP 1176



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 67   GEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS 126
            GE    G  GPTG   P    GP+    G    P  PG G      G    R   G  G 
Sbjct: 1160 GEPGPPGPKGPTGDDGPKGNPGPV----GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1215

Query: 127  RCG----------WCLGARGSGEAREAKGERGADPRGAAGDVGFGGA-----GTGPETPL 171
                           LG RG   +  ++G +G   +GA GD G  GA       GP  P 
Sbjct: 1216 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG--KGAKGDPGAIGAPGKTGPVGPAGPA 1273

Query: 172  GRHTPSCMRG 181
            G+  P  +RG
Sbjct: 1274 GKPGPDGLRG 1283



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 52/158 (32%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 37   PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--K 94
            PRG    N  G +G  P  P   V   G  GE  E G SG  G        GP   R  K
Sbjct: 1098 PRGPAGPN--GADG--PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1153

Query: 95   GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE---AKGERGADP 151
            G S  P  PG        G    +   G  G       G  G G  R    AKG+RG D 
Sbjct: 1154 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGED- 1210

Query: 152  RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
             G  G  G  G     GP  PLG+  P+   G   R G
Sbjct: 1211 -GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247



 Score = 31.6 bits (70), Expect = 0.43
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 36  LPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
           LP  + P  L G +G  G P  P  +         G++ G  GP G   P  E GP   +
Sbjct: 516 LPGESGPRGLLGPKGPPGIPGPPGVR---------GMD-GPQGPKGSLGPQGEPGP-PGQ 564

Query: 94  KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRG 153
           +G   T   PG   A    G    + + G          G  GS       G+ G  P G
Sbjct: 565 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP--------GMPGSDGPPGHPGKEG--PPG 614

Query: 154 AAGDVGFGGAGTGPETPLGRHTPSCMRG 181
             G+ G     +GP+ PLG   P  ++G
Sbjct: 615 TKGNQG----PSGPQGPLGYPGPRGVKG 638


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 57  KAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGT 114
           + +V   G  GE    G  GP G+  P  + GP  L   KG    P  PG       +G+
Sbjct: 649 RGEVGVPGSRGED---GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 705

Query: 115 ACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGG--AGT 165
                  G  G +     GARG       +GERG         PRGA G  G  G   G 
Sbjct: 706 LGFPGFPGASGEK-----GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 760

Query: 166 GPETPLG 172
           GP  P G
Sbjct: 761 GPHGPPG 767



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)

Query: 42  PSNLWGKEG--------GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLT 91
           P  L G++G        G+P    PK  +   G  G   E G  G +GK+ P  E GP  
Sbjct: 678 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 737

Query: 92  PR-----KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
           PR     +GA+    A G        G   +R   G +G       G  G        G+
Sbjct: 738 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-----GFPGPKGPPGPPGK 792

Query: 147 RGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
            G     G  G+VGF G  TGP  P G   P    G+T   G
Sbjct: 793 DGLPGHPGQRGEVGFQGK-TGPPGPPGVVGPQGAAGETGPMG 833



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 17   GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGH-------PVVPKAQVKARGGWGEG 69
            GPV Q    G      AD  P    P   +G +G         P  P       G  GE 
Sbjct: 1007 GPVGQPGAAG------ADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1060

Query: 70   LELGGSGPTGKARPASESGPLTPRKGASHTPEAP--GVGRAFRVQGTACQRPRAGTEGSR 127
             E G  GP G   P    GP  P    +  P+ P  GVG      G   ++   G  GS 
Sbjct: 1061 GETGDVGPMGPPGPPGPRGPAGP--NGADGPQGPPGGVGNL----GPPGEKGEPGESGSP 1114

Query: 128  CGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
                 G +G    +  +GERG   +G +G  G  G   GP+ P G   P
Sbjct: 1115 -----GIQGEPGVKGPRGERG--EKGESGQPGEPGP-PGPKGPTGDDGP 1155



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 67   GEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS 126
            GE    G  GPTG   P    GP+    G    P  PG G      G    R   G  G 
Sbjct: 1139 GEPGPPGPKGPTGDDGPKGNPGPV----GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1194

Query: 127  RCG----------WCLGARGSGEAREAKGERGADPRGAAGDVGFGGA-----GTGPETPL 171
                           LG RG   +  ++G +G   +GA GD G  GA       GP  P 
Sbjct: 1195 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG--KGAKGDPGAIGAPGKTGPVGPAGPA 1252

Query: 172  GRHTPSCMRG 181
            G+  P  +RG
Sbjct: 1253 GKPGPDGLRG 1262



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 52/158 (32%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 37   PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--K 94
            PRG    N  G +G  P  P   V   G  GE  E G SG  G        GP   R  K
Sbjct: 1077 PRGPAGPN--GADG--PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1132

Query: 95   GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE---AKGERGADP 151
            G S  P  PG        G    +   G  G       G  G G  R    AKG+RG D 
Sbjct: 1133 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGED- 1189

Query: 152  RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
             G  G  G  G     GP  PLG+  P+   G   R G
Sbjct: 1190 -GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226



 Score = 31.6 bits (70), Expect = 0.43
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 36  LPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
           LP  + P  L G +G  G P  P  +         G++ G  GP G   P  E GP   +
Sbjct: 495 LPGESGPRGLLGPKGPPGIPGPPGVR---------GMD-GPQGPKGSLGPQGEPGP-PGQ 543

Query: 94  KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRG 153
           +G   T   PG   A    G    + + G          G  GS       G+ G  P G
Sbjct: 544 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP--------GMPGSDGPPGHPGKEG--PPG 593

Query: 154 AAGDVGFGGAGTGPETPLGRHTPSCMRG 181
             G+ G     +GP+ PLG   P  ++G
Sbjct: 594 TKGNQG----PSGPQGPLGYPGPRGVKG 617


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 57  KAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGT 114
           + +V   G  GE    G  GP G+  P  + GP  L   KG    P  PG       +G+
Sbjct: 756 RGEVGVPGSRGED---GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812

Query: 115 ACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGG--AGT 165
                  G  G +     GARG       +GERG         PRGA G  G  G   G 
Sbjct: 813 LGFPGFPGASGEK-----GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 867

Query: 166 GPETPLG 172
           GP  P G
Sbjct: 868 GPHGPPG 874



 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)

Query: 42  PSNLWGKEG--------GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLT 91
           P  L G++G        G+P    PK  +   G  G   E G  G +GK+ P  E GP  
Sbjct: 785 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 844

Query: 92  PR-----KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
           PR     +GA+    A G        G   +R   G +G       G  G        G+
Sbjct: 845 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-----GFPGPKGPPGPPGK 899

Query: 147 RGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
            G     G  G+VGF G  TGP  P G   P    G+T   G
Sbjct: 900 DGLPGHPGQRGEVGFQGK-TGPPGPPGVVGPQGAAGETGPMG 940



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 17   GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGH-------PVVPKAQVKARGGWGEG 69
            GPV Q    G      AD  P    P   +G +G         P  P       G  GE 
Sbjct: 1114 GPVGQPGAAG------ADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1167

Query: 70   LELGGSGPTGKARPASESGPLTPRKGASHTPEAP--GVGRAFRVQGTACQRPRAGTEGSR 127
             E G  GP G   P    GP  P    +  P+ P  GVG      G   ++   G  GS 
Sbjct: 1168 GETGDVGPMGPPGPPGPRGPAGP--NGADGPQGPPGGVGNL----GPPGEKGEPGESGSP 1221

Query: 128  CGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
                 G +G    +  +GERG   +G +G  G  G   GP+ P G   P
Sbjct: 1222 -----GIQGEPGVKGPRGERG--EKGESGQPGEPGP-PGPKGPTGDDGP 1262



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 67   GEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS 126
            GE    G  GPTG   P    GP+    G    P  PG G      G    R   G  G 
Sbjct: 1246 GEPGPPGPKGPTGDDGPKGNPGPV----GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1301

Query: 127  RCG----------WCLGARGSGEAREAKGERGADPRGAAGDVGFGGA-----GTGPETPL 171
                           LG RG   +  ++G +G   +GA GD G  GA       GP  P 
Sbjct: 1302 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG--KGAKGDPGAIGAPGKTGPVGPAGPA 1359

Query: 172  GRHTPSCMRG 181
            G+  P  +RG
Sbjct: 1360 GKPGPDGLRG 1369



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 52/158 (32%), Positives = 57/158 (36%), Gaps = 15/158 (9%)

Query: 37   PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--K 94
            PRG    N  G +G  P  P   V   G  GE  E G SG  G        GP   R  K
Sbjct: 1184 PRGPAGPN--GADG--PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1239

Query: 95   GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE---AKGERGADP 151
            G S  P  PG        G    +   G  G       G  G G  R    AKG+RG D 
Sbjct: 1240 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGED- 1296

Query: 152  RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
             G  G  G  G     GP  PLG+  P+   G   R G
Sbjct: 1297 -GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333



 Score = 31.6 bits (70), Expect = 0.43
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 36  LPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
           LP  + P  L G +G  G P  P  +         G++ G  GP G   P  E GP   +
Sbjct: 602 LPGESGPRGLLGPKGPPGIPGPPGVR---------GMD-GPQGPKGSLGPQGEPGP-PGQ 650

Query: 94  KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRG 153
           +G   T   PG   A    G    + + G          G  GS       G+ G  P G
Sbjct: 651 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP--------GMPGSDGPPGHPGKEG--PPG 700

Query: 154 AAGDVGFGGAGTGPETPLGRHTPSCMRG 181
             G+ G     +GP+ PLG   P  ++G
Sbjct: 701 TKGNQG----PSGPQGPLGYPGPRGVKG 724


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 56/174 (32%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 32   QADLLPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELG------------GSGP 77
            + D  PRG K     G  G  G P  P    + RG  GE  +LG            G G 
Sbjct: 1930 RGDKGPRGEKGER--GDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGE 1987

Query: 78   TGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGAR 135
            TGK       GP   +  KG    P   G       QG A      G  G +     G R
Sbjct: 1988 TGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQ--GISGPR 2045

Query: 136  GSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
            GSG A  A GERG   P G  G+ G      GP+  +G   P   RG+T   GR
Sbjct: 2046 GSGGAAGAPGERGRTGPLGRKGEPG----EPGPKGGIGNRGP---RGETGDDGR 2092


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 56/174 (32%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 32   QADLLPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELG------------GSGP 77
            + D  PRG K     G  G  G P  P    + RG  GE  +LG            G G 
Sbjct: 2136 RGDKGPRGEKGER--GDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGE 2193

Query: 78   TGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGAR 135
            TGK       GP   +  KG    P   G       QG A      G  G +     G R
Sbjct: 2194 TGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQ--GISGPR 2251

Query: 136  GSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
            GSG A  A GERG   P G  G+ G      GP+  +G   P   RG+T   GR
Sbjct: 2252 GSGGAAGAPGERGRTGPLGRKGEPG----EPGPKGGIGNRGP---RGETGDDGR 2298


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 56/174 (32%), Positives = 65/174 (37%), Gaps = 28/174 (16%)

Query: 32   QADLLPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELG------------GSGP 77
            + D  PRG K     G  G  G P  P    + RG  GE  +LG            G G 
Sbjct: 1529 RGDKGPRGEKGER--GDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGE 1586

Query: 78   TGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGAR 135
            TGK       GP   +  KG    P   G       QG A      G  G +     G R
Sbjct: 1587 TGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQ--GISGPR 1644

Query: 136  GSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
            GSG A  A GERG   P G  G+ G      GP+  +G   P   RG+T   GR
Sbjct: 1645 GSGGAAGAPGERGRTGPLGRKGEPG----EPGPKGGIGNRGP---RGETGDDGR 1691


>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 92  PRKGASHTPEAPGVGRAFRVQGTACQRP--RAGTEGSRCGWCLGARGSGEAREAKGERGA 149
           P  G S   + PG GR    +    QRP   A +  +R     G  G G A ++ G+ G 
Sbjct: 19  PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78

Query: 150 DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
            PR A  + G  G G+G   P GR   + + G
Sbjct: 79  LPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTG 110


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 44/144 (30%), Positives = 58/144 (40%), Gaps = 29/144 (20%)

Query: 36  LPRGAKPSN---LWGKEGGHPVVPKAQVKAR--------GGWGEGLELGGSGPTGKARPA 84
           +PRG  P     L GK+  + + P +  + R        GG G G   GG+G  G+AR  
Sbjct: 15  VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74

Query: 85  SESGPLTPRKGASHTPEAP----GVGRAFRVQGTACQR---PRAGTEGSRCGWCLGARGS 137
           +ESG    R+       AP    G G A R       +   P  G EG       G RG 
Sbjct: 75  AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG-------GERGE 127

Query: 138 GEAREAKGE----RGADPRGAAGD 157
             A E + E    RG   R +AG+
Sbjct: 128 ESASERESERAPGRGPGARSSAGE 151


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 44/144 (30%), Positives = 58/144 (40%), Gaps = 29/144 (20%)

Query: 36  LPRGAKPSN---LWGKEGGHPVVPKAQVKAR--------GGWGEGLELGGSGPTGKARPA 84
           +PRG  P     L GK+  + + P +  + R        GG G G   GG+G  G+AR  
Sbjct: 15  VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74

Query: 85  SESGPLTPRKGASHTPEAP----GVGRAFRVQGTACQR---PRAGTEGSRCGWCLGARGS 137
           +ESG    R+       AP    G G A R       +   P  G EG       G RG 
Sbjct: 75  AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG-------GERGE 127

Query: 138 GEAREAKGE----RGADPRGAAGD 157
             A E + E    RG   R +AG+
Sbjct: 128 ESASERESERAPGRGPGARSSAGE 151


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 17  GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGG-- 74
           GP       G R V  AD + RG K S     E G P   K  +  +G  GE  ++G   
Sbjct: 763 GPQGPIGYPGPRGVKGADGV-RGLKGSKGEKGEDGFPGF-KGDMGLKGDRGEVGQIGPRG 820

Query: 75  ----SGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRC 128
                GP G+A P  + GP      KG    P  PG       +G+       G  G + 
Sbjct: 821 EDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEK- 879

Query: 129 GWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--------AGTGPETPLGRHTPSCM 179
               GARG       +G+RG   PRG+ G  G  G         G GP  P G   P   
Sbjct: 880 ----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 935

Query: 180 RG 181
           +G
Sbjct: 936 QG 937



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 53   PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGR 107
            P  P+    ARG  G+    G SG  G   P  E GP  P+      G    P  PG   
Sbjct: 896  PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKD- 954

Query: 108  AFRVQGTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
               + G   QR   G +G       G  +G +G        GERG   P G  G+ G  G
Sbjct: 955  --GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPG 1012

Query: 163  AG--------TGPETPLGRHTPSCMRG 181
            A          GP+   G+  P+ +RG
Sbjct: 1013 AAGKEGAKGDPGPQGISGKDGPAGLRG 1039



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 64   GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
            G  GE  ++G  GP G   P    GP     GA      PG   +    G   +   AG 
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGP----NGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1274

Query: 124  EGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTP 176
             G       G  G G  +  +GE+G A P GAAG  G  G   G + P G   P
Sbjct: 1275 PGPP-----GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PGDDGPKGNPGP 1322



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 42/179 (23%)

Query: 12  GKVTEGP-VTQQHVKGCRLVAQADLLPRGAK-PSNLWGKEGGHPVVPKAQVKARGGWGEG 69
           G  ++GP ++ Q  +   ++ QA +  RG   P  L G+ G                   
Sbjct: 513 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG------------------- 553

Query: 70  LELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCG 129
             +GG G +G    + + GP  PR      P  P         G   +R R G +     
Sbjct: 554 -PVGGPGSSGAKGESGDPGPQGPR--GVQGPPGP--------TGKPGKRGRPGAD----- 597

Query: 130 WCLGARGSGEAREAKGERGADP-RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
              G RG      AKG+RG D   G  GD G  G   GP+ P G      MRG+    G
Sbjct: 598 ---GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE-RGPQGPPGPPGDDGMRGEDGEIG 652



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 51/191 (26%), Positives = 69/191 (36%), Gaps = 41/191 (21%)

Query: 36  LPRGAKPSNLWGKEG-----GHPVV--------PKAQVKARGGWGEGLELGGSGPTGKAR 82
           LP  A P  L G  G     G P +        PK  +  +G  G   + G  GP G   
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 715

Query: 83  PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS--------RCGW---- 130
           P    GP    KG    P   G+  A    G   +  ++G +G+          G+    
Sbjct: 716 PQGPIGP-PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 774

Query: 131 -CLGARGSGEAREAKGERGAD-------------PRGAAGDVGFGGAGTGPETPLGRHTP 176
              GA G    + +KGE+G D              RG  G +G  G   GPE P GR  P
Sbjct: 775 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE-DGPEGPKGRAGP 833

Query: 177 SCMRGQTSRWG 187
           +   G + + G
Sbjct: 834 TGDPGPSGQAG 844



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 37   PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRK 94
            P+G  P    GK+G  GHP     Q    G  G+    G  G  G   P  E+GP+    
Sbjct: 944  PKG--PPGPPGKDGLPGHP----GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI---- 993

Query: 95   GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGA 154
            G    P  PG      + G A +    G  G +     G  G    R   GERG    GA
Sbjct: 994  GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ--GISGKDGPAGLRGFPGERGLP--GA 1049

Query: 155  AGDVGFGGAGTGPETPLG 172
             G  G  G G GP+ P G
Sbjct: 1050 QGAPGLKG-GEGPQGPPG 1066



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 46/166 (27%)

Query: 49   EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP------------------- 89
            E G+P  P  +    G  GE  E G +GP G A P    GP                   
Sbjct: 1271 EAGNPG-PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1329

Query: 90   -------------LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
                         +   KG    P  PG        G      + G  G+      GA G
Sbjct: 1330 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA-----AGAEG 1384

Query: 137  SGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
                + AKGE GA+ P G  G V       GP+ P G+  P  +RG
Sbjct: 1385 RQGEKGAKGEAGAEGPPGKTGPV-------GPQGPAGKPGPEGLRG 1423



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 56  PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGRAFR 110
           PK      G  G   E G  G  GK  P  + GP  PR     +G +  P   G      
Sbjct: 863 PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG 922

Query: 111 VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPET 169
             G   +R   G +G      +G  G        G+ G     G  G+ GF G  TGP  
Sbjct: 923 PPGPPGERGPQGPQGP-----VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 976

Query: 170 PLGRHTPSCMRGQTSRWG 187
           P G   P    G+T   G
Sbjct: 977 PGGVVGPQGPTGETGPIG 994



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 57   KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTAC 116
            K +  A G  G+   +G  GP GK  P    G   P  G    P A G        G   
Sbjct: 1392 KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP-VGEQGLPGAAGQDGPPGPMGPPG 1450

Query: 117  QRPRAGTEGSRCG----WCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPL 171
                 G  GS+        +G  G    +  KG+RG    +G+ G  G GG   GP  PL
Sbjct: 1451 LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI-PGPAGPL 1509

Query: 172  GRHTPSCMRG 181
            G   P  + G
Sbjct: 1510 GPPGPPGLPG 1519



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 15/156 (9%)

Query: 37   PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
            P+G  P    G  GG  V  K +    G  G   E G  GP G+     E+GP     GA
Sbjct: 1250 PQG--PPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP----PGA 1301

Query: 97   SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAA 155
            +  P A G       +G        G  G       G  G        G++G D   G  
Sbjct: 1302 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP-----GEPGPAGQDGVGGDKGEDGDPGQP 1356

Query: 156  GDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGRLAA 191
            G  G  G   GP  P G+  P    G   R G   A
Sbjct: 1357 GPPGPSGE-AGPPGPPGKRGPPGAAGAEGRQGEKGA 1391


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 17  GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGG-- 74
           GP       G R V  AD + RG K S     E G P   K  +  +G  GE  ++G   
Sbjct: 712 GPQGPIGYPGPRGVKGADGV-RGLKGSKGEKGEDGFPGF-KGDMGLKGDRGEVGQIGPRG 769

Query: 75  ----SGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRC 128
                GP G+A P  + GP      KG    P  PG       +G+       G  G + 
Sbjct: 770 EDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEK- 828

Query: 129 GWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--------AGTGPETPLGRHTPSCM 179
               GARG       +G+RG   PRG+ G  G  G         G GP  P G   P   
Sbjct: 829 ----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 884

Query: 180 RG 181
           +G
Sbjct: 885 QG 886



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 53  PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGR 107
           P  P+    ARG  G+    G SG  G   P  E GP  P+      G    P  PG   
Sbjct: 845 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKD- 903

Query: 108 AFRVQGTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
              + G   QR   G +G       G  +G +G        GERG   P G  G+ G  G
Sbjct: 904 --GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPG 961

Query: 163 AG--------TGPETPLGRHTPSCMRG 181
           A          GP+   G+  P+ +RG
Sbjct: 962 AAGKEGAKGDPGPQGISGKDGPAGLRG 988



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 64   GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
            G  GE  ++G  GP G   P    GP     GA      PG   +    G   +   AG 
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGP----NGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1223

Query: 124  EGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTP 176
             G       G  G G  +  +GE+G A P GAAG  G  G   G + P G   P
Sbjct: 1224 PGPP-----GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PGDDGPKGNPGP 1271



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 42/179 (23%)

Query: 12  GKVTEGP-VTQQHVKGCRLVAQADLLPRGAK-PSNLWGKEGGHPVVPKAQVKARGGWGEG 69
           G  ++GP ++ Q  +   ++ QA +  RG   P  L G+ G                   
Sbjct: 462 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG------------------- 502

Query: 70  LELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCG 129
             +GG G +G    + + GP  PR      P  P         G   +R R G +     
Sbjct: 503 -PVGGPGSSGAKGESGDPGPQGPR--GVQGPPGP--------TGKPGKRGRPGAD----- 546

Query: 130 WCLGARGSGEAREAKGERGADP-RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
              G RG      AKG+RG D   G  GD G  G   GP+ P G      MRG+    G
Sbjct: 547 ---GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE-RGPQGPPGPPGDDGMRGEDGEIG 601



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 51/191 (26%), Positives = 69/191 (36%), Gaps = 41/191 (21%)

Query: 36  LPRGAKPSNLWGKEG-----GHPVV--------PKAQVKARGGWGEGLELGGSGPTGKAR 82
           LP  A P  L G  G     G P +        PK  +  +G  G   + G  GP G   
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 664

Query: 83  PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS--------RCGW---- 130
           P    GP    KG    P   G+  A    G   +  ++G +G+          G+    
Sbjct: 665 PQGPIGP-PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 723

Query: 131 -CLGARGSGEAREAKGERGAD-------------PRGAAGDVGFGGAGTGPETPLGRHTP 176
              GA G    + +KGE+G D              RG  G +G  G   GPE P GR  P
Sbjct: 724 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE-DGPEGPKGRAGP 782

Query: 177 SCMRGQTSRWG 187
           +   G + + G
Sbjct: 783 TGDPGPSGQAG 793



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 37   PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRK 94
            P+G  P    GK+G  GHP     Q    G  G+    G  G  G   P  E+GP+    
Sbjct: 893  PKG--PPGPPGKDGLPGHP----GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI---- 942

Query: 95   GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGA 154
            G    P  PG      + G A +    G  G +     G  G    R   GERG    GA
Sbjct: 943  GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ--GISGKDGPAGLRGFPGERGLP--GA 998

Query: 155  AGDVGFGGAGTGPETPLG 172
             G  G  G G GP+ P G
Sbjct: 999  QGAPGLKG-GEGPQGPPG 1015



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 46/166 (27%)

Query: 49   EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP------------------- 89
            E G+P  P  +    G  GE  E G +GP G A P    GP                   
Sbjct: 1220 EAGNPG-PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1278

Query: 90   -------------LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
                         +   KG    P  PG        G      + G  G+      GA G
Sbjct: 1279 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA-----AGAEG 1333

Query: 137  SGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
                + AKGE GA+ P G  G V       GP+ P G+  P  +RG
Sbjct: 1334 RQGEKGAKGEAGAEGPPGKTGPV-------GPQGPAGKPGPEGLRG 1372



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 56  PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGRAFR 110
           PK      G  G   E G  G  GK  P  + GP  PR     +G +  P   G      
Sbjct: 812 PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG 871

Query: 111 VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPET 169
             G   +R   G +G      +G  G        G+ G     G  G+ GF G  TGP  
Sbjct: 872 PPGPPGERGPQGPQGP-----VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 925

Query: 170 PLGRHTPSCMRGQTSRWG 187
           P G   P    G+T   G
Sbjct: 926 PGGVVGPQGPTGETGPIG 943



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 57   KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTAC 116
            K +  A G  G+   +G  GP GK  P    G   P  G    P A G        G   
Sbjct: 1341 KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP-VGEQGLPGAAGQDGPPGPMGPPG 1399

Query: 117  QRPRAGTEGSRCG----WCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPL 171
                 G  GS+        +G  G    +  KG+RG    +G+ G  G GG   GP  PL
Sbjct: 1400 LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI-PGPAGPL 1458

Query: 172  GRHTPSCMRG 181
            G   P  + G
Sbjct: 1459 GPPGPPGLPG 1468



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 15/156 (9%)

Query: 37   PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
            P+G  P    G  GG  V  K +    G  G   E G  GP G+     E+GP     GA
Sbjct: 1199 PQG--PPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP----PGA 1250

Query: 97   SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAA 155
            +  P A G       +G        G  G       G  G        G++G D   G  
Sbjct: 1251 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP-----GEPGPAGQDGVGGDKGEDGDPGQP 1305

Query: 156  GDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGRLAA 191
            G  G  G   GP  P G+  P    G   R G   A
Sbjct: 1306 GPPGPSGE-AGPPGPPGKRGPPGAAGAEGRQGEKGA 1340


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)

Query: 17  GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGG-- 74
           GP       G R V  AD + RG K S     E G P   K  +  +G  GE  ++G   
Sbjct: 751 GPQGPIGYPGPRGVKGADGV-RGLKGSKGEKGEDGFPGF-KGDMGLKGDRGEVGQIGPRG 808

Query: 75  ----SGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRC 128
                GP G+A P  + GP      KG    P  PG       +G+       G  G + 
Sbjct: 809 EDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEK- 867

Query: 129 GWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--------AGTGPETPLGRHTPSCM 179
               GARG       +G+RG   PRG+ G  G  G         G GP  P G   P   
Sbjct: 868 ----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 923

Query: 180 RG 181
           +G
Sbjct: 924 QG 925



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 53   PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGR 107
            P  P+    ARG  G+    G SG  G   P  E GP  P+      G    P  PG   
Sbjct: 884  PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKD- 942

Query: 108  AFRVQGTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
               + G   QR   G +G       G  +G +G        GERG   P G  G+ G  G
Sbjct: 943  --GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPG 1000

Query: 163  AG--------TGPETPLGRHTPSCMRG 181
            A          GP+   G+  P+ +RG
Sbjct: 1001 AAGKEGAKGDPGPQGISGKDGPAGLRG 1027



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 11/114 (9%)

Query: 64   GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
            G  GE  ++G  GP G   P    GP     GA      PG   +    G   +   AG 
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGP----NGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1262

Query: 124  EGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTP 176
             G       G  G G  +  +GE+G A P GAAG  G  G   G + P G   P
Sbjct: 1263 PGPP-----GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PGDDGPKGNPGP 1310



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 42/179 (23%)

Query: 12  GKVTEGP-VTQQHVKGCRLVAQADLLPRGAK-PSNLWGKEGGHPVVPKAQVKARGGWGEG 69
           G  ++GP ++ Q  +   ++ QA +  RG   P  L G+ G                   
Sbjct: 501 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG------------------- 541

Query: 70  LELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCG 129
             +GG G +G    + + GP  PR      P  P         G   +R R G +     
Sbjct: 542 -PVGGPGSSGAKGESGDPGPQGPR--GVQGPPGP--------TGKPGKRGRPGAD----- 585

Query: 130 WCLGARGSGEAREAKGERGADP-RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
              G RG      AKG+RG D   G  GD G  G   GP+ P G      MRG+    G
Sbjct: 586 ---GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE-RGPQGPPGPPGDDGMRGEDGEIG 640



 Score = 37.0 bits (84), Expect = 0.010
 Identities = 51/191 (26%), Positives = 69/191 (36%), Gaps = 41/191 (21%)

Query: 36  LPRGAKPSNLWGKEG-----GHPVV--------PKAQVKARGGWGEGLELGGSGPTGKAR 82
           LP  A P  L G  G     G P +        PK  +  +G  G   + G  GP G   
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 703

Query: 83  PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS--------RCGW---- 130
           P    GP    KG    P   G+  A    G   +  ++G +G+          G+    
Sbjct: 704 PQGPIGP-PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 762

Query: 131 -CLGARGSGEAREAKGERGAD-------------PRGAAGDVGFGGAGTGPETPLGRHTP 176
              GA G    + +KGE+G D              RG  G +G  G   GPE P GR  P
Sbjct: 763 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE-DGPEGPKGRAGP 821

Query: 177 SCMRGQTSRWG 187
           +   G + + G
Sbjct: 822 TGDPGPSGQAG 832



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 17/138 (12%)

Query: 37   PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRK 94
            P+G  P    GK+G  GHP     Q    G  G+    G  G  G   P  E+GP+    
Sbjct: 932  PKG--PPGPPGKDGLPGHP----GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI---- 981

Query: 95   GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGA 154
            G    P  PG      + G A +    G  G +     G  G    R   GERG    GA
Sbjct: 982  GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ--GISGKDGPAGLRGFPGERGLP--GA 1037

Query: 155  AGDVGFGGAGTGPETPLG 172
             G  G  G G GP+ P G
Sbjct: 1038 QGAPGLKG-GEGPQGPPG 1054



 Score = 36.2 bits (82), Expect = 0.018
 Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 46/166 (27%)

Query: 49   EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP------------------- 89
            E G+P  P  +    G  GE  E G +GP G A P    GP                   
Sbjct: 1259 EAGNPG-PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1317

Query: 90   -------------LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
                         +   KG    P  PG        G      + G  G+      GA G
Sbjct: 1318 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA-----AGAEG 1372

Query: 137  SGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
                + AKGE GA+ P G  G V       GP+ P G+  P  +RG
Sbjct: 1373 RQGEKGAKGEAGAEGPPGKTGPV-------GPQGPAGKPGPEGLRG 1411



 Score = 35.4 bits (80), Expect = 0.030
 Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 56  PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGRAFR 110
           PK      G  G   E G  G  GK  P  + GP  PR     +G +  P   G      
Sbjct: 851 PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG 910

Query: 111 VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPET 169
             G   +R   G +G      +G  G        G+ G     G  G+ GF G  TGP  
Sbjct: 911 PPGPPGERGPQGPQGP-----VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 964

Query: 170 PLGRHTPSCMRGQTSRWG 187
           P G   P    G+T   G
Sbjct: 965 PGGVVGPQGPTGETGPIG 982



 Score = 30.0 bits (66), Expect = 1.3
 Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 57   KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTAC 116
            K +  A G  G+   +G  GP GK  P    G   P  G    P A G        G   
Sbjct: 1380 KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP-VGEQGLPGAAGQDGPPGPMGPPG 1438

Query: 117  QRPRAGTEGSRCG----WCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPL 171
                 G  GS+        +G  G    +  KG+RG    +G+ G  G GG   GP  PL
Sbjct: 1439 LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI-PGPAGPL 1497

Query: 172  GRHTPSCMRG 181
            G   P  + G
Sbjct: 1498 GPPGPPGLPG 1507



 Score = 29.6 bits (65), Expect = 1.7
 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 15/156 (9%)

Query: 37   PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
            P+G  P    G  GG  V  K +    G  G   E G  GP G+     E+GP     GA
Sbjct: 1238 PQG--PPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP----PGA 1289

Query: 97   SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAA 155
            +  P A G       +G        G  G       G  G        G++G D   G  
Sbjct: 1290 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP-----GEPGPAGQDGVGGDKGEDGDPGQP 1344

Query: 156  GDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGRLAA 191
            G  G  G   GP  P G+  P    G   R G   A
Sbjct: 1345 GPPGPSGE-AGPPGPPGKRGPPGAAGAEGRQGEKGA 1379


>gi|5803080 macrophage receptor with collagenous structure [Homo
           sapiens]
          Length = 520

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 39/119 (32%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 53  PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP-----RKGASHTPEAPGVGR 107
           P  P A+  A+G  G     G SGP G      E+G   P     ++GA+ TP   G   
Sbjct: 170 PPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKG 229

Query: 108 AFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVG-FGGAG 164
           +    G    +   GT+G +    LG  GS   R  KG+ G   P GA G  G FG  G
Sbjct: 230 SKGDGGLIGPKGETGTKGEKGD--LGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPG 286


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 73   GGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCL 132
            G  GPTG   P  E G   P       P  PG+  A  ++G        G  G     C 
Sbjct: 1352 GRKGPTGLPGPRGEPG---PPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCK 1408

Query: 133  GARGSGEAREAKGERGA-DPRGAAGDVGFGG--AGTGPETPLGRHTP 176
            G  G    R   G  G+  P G  GD G  G   G GP  P+G   P
Sbjct: 1409 GEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPGPIGDPGP 1455



 Score = 30.8 bits (68), Expect = 0.74
 Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 30/140 (21%)

Query: 49  EGGHPVVP-----KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAP 103
           E GHP VP     +     +G  G+ +    + P G+  P    GP  P KG      AP
Sbjct: 640 ERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYP-GRHGPPGFDGPPGP-KGFPGPQGAP 697

Query: 104 GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGG- 162
           G+       G+   + R GT G+               E  G  G   RG  GD GFGG 
Sbjct: 698 GLS------GSDGHKGRPGTPGTA--------------EIPGPPGF--RGDMGDPGFGGE 735

Query: 163 AGTGPETPLGRHTPSCMRGQ 182
            G+ P  P G      + GQ
Sbjct: 736 KGSSPVGPPGPPGSPGVNGQ 755



 Score = 27.3 bits (59), Expect = 8.2
 Identities = 40/136 (29%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 47   GKEGGHPVVPKAQVKARGGWGEGLELGGSG-----PTGKARPASESGPLTPRKGASHTPE 101
            G  G H V P   V   G  GE  + G  G     P GK  P    G   P   A  T  
Sbjct: 1190 GASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGR 1249

Query: 102  APGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADP-----RGAAG 156
            AP               P  G  G +     G  G    R A G  G        RG  G
Sbjct: 1250 APK------------DIPDPGPPGDQ-----GPPGPDGPRGAPGPPGLPGSVDLLRGEPG 1292

Query: 157  DVGFGGAGTGPETPLG 172
            D G  G   GP  P G
Sbjct: 1293 DCGLPGP-PGPPGPPG 1307


>gi|61699226 pulmonary surfactant-associated protein D precursor
           [Homo sapiens]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 20/152 (13%)

Query: 36  LPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKAR---PASESGPLTP 92
           LP  A  + + G+ G  PV PK    + G  G   + G SGP G      PA   GPL  
Sbjct: 68  LPGAAGQAGMPGQAG--PVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGPL-G 124

Query: 93  RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DP 151
           ++G       PG       +G A  +   G  G +     G+ G+      KGERG    
Sbjct: 125 KQGNIGPQGKPG------PKGEAGPKGEVGAPGMQ-----GSAGARGLAGPKGERGVPGE 173

Query: 152 RGAAGDVGFGGA--GTGPETPLGRHTPSCMRG 181
           RG  G+ G  G+    GP+   G   P  ++G
Sbjct: 174 RGVPGNTGAAGSAGAMGPQGSPGARGPPGLKG 205



 Score = 37.7 bits (86), Expect = 0.006
 Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 13/117 (11%)

Query: 73  GGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEG------- 125
           G  GP GK  P  E+GP    KG    P   G   A  + G   +R   G  G       
Sbjct: 127 GNIGPQGKPGPKGEAGP----KGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGA 182

Query: 126 SRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQ 182
           +     +G +GS  AR   G +G   +G  GD G  G    P+    R     ++GQ
Sbjct: 183 AGSAGAMGPQGSPGARGPPGLKG--DKGIPGDKGAKGESGLPDVASLRQQVEALQGQ 237


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 63  RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAG 122
           R GWG   +LGG G  GK  P     P   R         PG     ++ G      RAG
Sbjct: 398 REGWGARAKLGGRGVCGKCGPGPWDDPARRRN--------PGAAARAKLAG-----QRAG 444

Query: 123 TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGP 167
              +R G  +G+RG G    A        RG      +GG    P
Sbjct: 445 RARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP 489


>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
           sapiens]
          Length = 594

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 63  RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAG 122
           R GWG   +LGG G  GK  P     P   R         PG     ++ G      RAG
Sbjct: 398 REGWGARAKLGGRGVCGKCGPGPWDDPARRRN--------PGAAARAKLAG-----QRAG 444

Query: 123 TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGP 167
              +R G  +G+RG G    A        RG      +GG    P
Sbjct: 445 RARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP 489


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 26/137 (18%)

Query: 73   GGSGPTGKARPASESGPLTP--------RKGASHTPEAPGVGRAFRVQGTACQRPRAGTE 124
            G  GP G+  P  + GP+ P        + G    P  PG+     V+G      R G  
Sbjct: 934  GLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLD---GVKGEPGDPGRPGPV 990

Query: 125  GSR--CGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGF-GGAGT----GPETP 170
            G +   G+ +G  G       KG+RG         P+G+ G  G  GG GT    GP+ P
Sbjct: 991  GEQGFMGF-IGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGP 1049

Query: 171  LGRHTPSCMRGQTSRWG 187
             G   P  MRG   R G
Sbjct: 1050 PGSRGPPGMRGAKGRRG 1066



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 47/174 (27%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 13   KVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGW-GEGLE 71
            K  EGP  +Q   G         L     P  + G++G   +     +  R G  G+  E
Sbjct: 1399 KGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGE 1458

Query: 72   LGGSGPTGKARPASESGPLTPRKGASHTPEA---PGVGRAFRVQGTACQRPRAGTEGSRC 128
             G  G  G   PA + G      G +  P A   PG      + G      + GTEG R 
Sbjct: 1459 QGDDGDPGPMGPAGKRG----NPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEG-RT 1513

Query: 129  GWCLGARGSGEAREAKGERGA----------DPRGAAGDVGFGGAGTGPETPLG 172
            G   G +G   ++   G+ G            P+G  GD+GF G   GP  P G
Sbjct: 1514 G-LPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGI-QGPRGPPG 1565



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 40/134 (29%), Positives = 45/134 (33%), Gaps = 20/134 (14%)

Query: 71   ELGGSGPTGKARPASESGPLTPRKGASHTPEAPG----------VGRAFRVQGTACQRPR 120
            E G  GP G   P  E GP  P  GA   P  PG          +G     QG   QR  
Sbjct: 1130 EPGPQGPQGPIGPPGEMGPKGP-PGAVGEPGLPGEAGMKGDLGPLGTPGE-QGLIGQRGE 1187

Query: 121  AGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGG--AGTGPETPLGRHTPS 177
             G EG       G  G    +  +G+ G D   G  G  G  G     GP    G   P 
Sbjct: 1188 PGLEGDS-----GPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPE 1242

Query: 178  CMRGQTSRWGRLAA 191
               G+    GR  A
Sbjct: 1243 GKSGKQGEKGRTGA 1256



 Score = 32.7 bits (73), Expect = 0.20
 Identities = 45/178 (25%), Positives = 58/178 (32%), Gaps = 18/178 (10%)

Query: 17   GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSG 76
            GP+    +KG R     D          L G++G  P  P      RG  G+  + G  G
Sbjct: 1195 GPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDG--PPGPPGVTGVRGPEGKSGKQGEKG 1252

Query: 77   PTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
             TG        G L    G    P  PG       +G+       G  G      +GA+G
Sbjct: 1253 RTGAKGAKGYQGQL----GEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGR-----MGAQG 1303

Query: 137  SGEAREAKGERGA-------DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
                    G +G         P+G  G+ G  G   GP  P G   P   RG     G
Sbjct: 1304 EPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPG 1361



 Score = 32.3 bits (72), Expect = 0.25
 Identities = 40/136 (29%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 56   PKAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQG 113
            P+    +RG  G     G  GP G   PA E G   L    G    P  PG       QG
Sbjct: 1046 PQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPG------QQG 1099

Query: 114  TACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGR 173
             A +R   G+ G       G  G    +   GE G  P+G  G +G  G   GP+ P G 
Sbjct: 1100 VAGERGHLGSRG--FPGIPGPSGPPGTKGLPGEPG--PQGPQGPIGPPGE-MGPKGPPGA 1154

Query: 174  HTPSCMRGQTSRWGRL 189
                 + G+    G L
Sbjct: 1155 VGEPGLPGEAGMKGDL 1170



 Score = 28.9 bits (63), Expect = 2.8
 Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 14/63 (22%)

Query: 37   PRGAKPSNLWGKEG-----------GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPAS 85
            PRG  P  L GKEG           G P  PK    +RG WG     G  GP G+  P  
Sbjct: 1560 PRG--PPGLMGKEGIVGPLGILGPSGLPG-PKGDKGSRGDWGLQGPRGPPGPRGRPGPPG 1616

Query: 86   ESG 88
              G
Sbjct: 1617 PPG 1619


>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
          Length = 1028

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 38/119 (31%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 64  GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
           G  GE    G SGP+G      E GP    KG +     PG   A   +G   +R   GT
Sbjct: 377 GADGEAGRPGSSGPSGDEGQPGEPGP-PGEKGEAGDEGNPGPDGAPGERGGPGERGPRGT 435

Query: 124 EGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
            G+R     G RG       +G++G + P G  GD G  G   GP+   G   P    G
Sbjct: 436 PGTR-----GPRGDPGEAGPQGDQGREGPVGVPGDPGEAGP-IGPKGYRGDEGPPGSEG 488


>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
          Length = 629

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 48/157 (30%), Positives = 60/157 (38%), Gaps = 29/157 (18%)

Query: 10  SEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKE--GGHPVVPKAQVKARGGWG 67
           S G    GP  Q  V+  +    A   P  A+P+     E  GGHP  P A  +A   W 
Sbjct: 271 SPGGADGGPRRQNSVR--QRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRA---WA 325

Query: 68  EGLELGGSGPTGKARPASESGPLTPRKG----ASHTPEAPGV-----GRAFR-------- 110
              E   + P   A PA+ S P +P +G    A + P A        GRA R        
Sbjct: 326 SSWE-SEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTR 384

Query: 111 ----VQGTACQRPRAGTEGSRCGWCLGARGSGEAREA 143
                Q    +RPRA     R     G RGS  AR+A
Sbjct: 385 GRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKA 421


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,712,575
Number of Sequences: 37866
Number of extensions: 577641
Number of successful extensions: 3732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 2864
Number of HSP's gapped (non-prelim): 1087
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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