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Search of human proteins with 169215887
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 404 e-113
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 404 e-113
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 404 e-113
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 47 1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 46 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 46 2e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 45 3e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 43 1e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 2e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 3e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 3e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 3e-04
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 42 4e-04
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 42 4e-04
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 42 4e-04
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 41 7e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 41 7e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 41 7e-04
gi|5803080 macrophage receptor with collagenous structure [Homo ... 41 7e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 40 0.001
gi|61699226 pulmonary surfactant-associated protein D precursor ... 40 0.001
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 40 0.001
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 40 0.001
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 40 0.001
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 40 0.002
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 40 0.002
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 404 bits (1038), Expect = e-113
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV
Sbjct: 1 MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
Query: 61 KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR
Sbjct: 61 KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR
Sbjct: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
Query: 181 GQTSRWGRLAA 191
GQTSRWGRLAA
Sbjct: 181 GQTSRWGRLAA 191
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 404 bits (1038), Expect = e-113
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV
Sbjct: 1 MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
Query: 61 KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR
Sbjct: 61 KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR
Sbjct: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
Query: 181 GQTSRWGRLAA 191
GQTSRWGRLAA
Sbjct: 181 GQTSRWGRLAA 191
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 404 bits (1038), Expect = e-113
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV
Sbjct: 1 MENGANRIFSEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQV 60
Query: 61 KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR
Sbjct: 61 KARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPR 120
Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR
Sbjct: 121 AGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMR 180
Query: 181 GQTSRWGRLAA 191
GQTSRWGRLAA
Sbjct: 181 GQTSRWGRLAA 191
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 47.0 bits (110), Expect = 1e-05
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 60 VKARGGWGEGLELGGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQ 117
V RG G + GG+GPTG + GP+ P +G P PG G +
Sbjct: 218 VGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGE 277
Query: 118 RPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTP 176
AG+ G+R GA G + +G +G + P+G G G G GP P+G P
Sbjct: 278 VGFAGSPGAR--GFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGE-AGPTGPMGAMGP 334
Query: 177 SCMRGQTSRWGRL 189
RG GRL
Sbjct: 335 LGPRGMPGERGRL 347
Score = 42.0 bits (97), Expect = 3e-04
Identities = 50/154 (32%), Positives = 60/154 (38%), Gaps = 24/154 (15%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--- 93
P+G+ E G+ VP RG G+ E+G SGP G A E G P
Sbjct: 619 PKGSSGDPGKPGEAGNAGVPGQ----RGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPT 674
Query: 94 --KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADP 151
+G P PG G QG G G R G RG+ GERG +P
Sbjct: 675 GFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPR-----GERGN------PGERG-EP 722
Query: 152 --RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQT 183
G G+ G G G GP+ P G PS G T
Sbjct: 723 GITGLPGEKGMAG-GHGPDGPKGSPGPSGTPGDT 755
Score = 38.1 bits (87), Expect = 0.005
Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 56 PKAQVKARGGWGEG---LELGGSGPTGKARPASESGPLTP-----RKGASHTPEAPGVGR 107
PK +V A G GE +G GP G E G L P ++GA P PG
Sbjct: 310 PKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMG 369
Query: 108 AFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGP 167
+ G++ G +G GARG + +GE G P G G G GA
Sbjct: 370 PLGIPGSSGFPGNPGMKGE--AGPTGARGPEGPQGQRGETG--PPGPVGSPGLPGAIGTD 425
Query: 168 ETP 170
TP
Sbjct: 426 GTP 428
Score = 37.4 bits (85), Expect = 0.008
Identities = 42/140 (30%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
P +V G G+ G GP G P E GP +G + PG A +
Sbjct: 1012 PAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGP----EGPAGNDGTPGRDGAVGER 1067
Query: 113 GTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGP 167
G AG GS+ +GA G R G RG P G AG G G GP
Sbjct: 1068 GDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGP-QGP 1126
Query: 168 ETPLGRHTPSCMRGQTSRWG 187
G H RGQ G
Sbjct: 1127 RGDKGDHGDRGDRGQKGHRG 1146
Score = 35.8 bits (81), Expect = 0.023
Identities = 45/165 (27%), Positives = 60/165 (36%), Gaps = 30/165 (18%)
Query: 37 PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR- 93
P G + G++G G P + RG G G GP G+ P GP P+
Sbjct: 100 PGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQG 159
Query: 94 ----KGASHTPEAP------------GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGS 137
G P AP G+ R F Q ++G GS+ G G+ G
Sbjct: 160 IDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDE-KSGL-GSQVGLMPGSVGP 217
Query: 138 GEAREAKG----ERGADPRGAAGDVGFGG-----AGTGPETPLGR 173
R +G + GA P G G+ G G GPE P G+
Sbjct: 218 VGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGK 262
Score = 34.7 bits (78), Expect = 0.051
Identities = 38/132 (28%), Positives = 49/132 (37%), Gaps = 22/132 (16%)
Query: 73 GGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGW 130
G SGP G A P GP T +G P PGV +G A + G G +
Sbjct: 438 GTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVP---GFKGEAGPKGEPGPHGIQ--G 492
Query: 131 CLGARGSGEAREAKGERG-------ADPRGAAGDVGFGGA--------GTGPETPLGRHT 175
+G G R +G+ G RGA G+ GF G+ G P+G
Sbjct: 493 PIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSG 552
Query: 176 PSCMRGQTSRWG 187
P +G R G
Sbjct: 553 PKGSQGDPGRPG 564
Score = 34.7 bits (78), Expect = 0.051
Identities = 51/159 (32%), Positives = 62/159 (38%), Gaps = 25/159 (15%)
Query: 36 LPRGAKPSNLWGKEG-----GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESG 88
LP P GK G G P V P RG GE E G +G G+ A G
Sbjct: 679 LPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHG 738
Query: 89 PLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG 148
P P KG+ PG +QG +R AGT G + G RG GE+G
Sbjct: 739 PDGP-KGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPK-----GDRGG------IGEKG 786
Query: 149 ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
A+ G AG+ G G PLG P+ G+ G
Sbjct: 787 AE--GTAGNDG----ARGLPGPLGPPGPAGPTGEKGEPG 819
Score = 28.9 bits (63), Expect = 2.8
Identities = 45/154 (29%), Positives = 53/154 (34%), Gaps = 19/154 (12%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKA-RGGWGE-------------GLELGGSGPTGKAR 82
P P L G G + K RGG GE GL G GP G A
Sbjct: 752 PGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLP-GPLGPPGPAG 810
Query: 83 PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE 142
P E G PR G P + G + G AG +G G +G
Sbjct: 811 PTGEKGEPGPR-GLVGPPGSRGNPGSRGENGPTGAVGFAGPQGP--DGQPGVKGEPGEPG 867
Query: 143 AKGERGA-DPRGAAGDVGFGGAGTGPETPLGRHT 175
KG+ G+ P+G AG G G P GR T
Sbjct: 868 QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGT 901
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.2 bits (108), Expect = 2e-05
Identities = 53/166 (31%), Positives = 61/166 (36%), Gaps = 25/166 (15%)
Query: 36 LPRGAKPSNLWGKEGGHPVVPKAQVK----ARGGWGEGLELGGSGPTGKARPASESGPL- 90
LP A P GK G V ARG G E G GP G A P +G
Sbjct: 645 LPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPG 704
Query: 91 -TPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA 149
KG + P APG A +QG +R AG G + G RG + A G G
Sbjct: 705 NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK-----GDRGDAGPKGADGSPGK 759
Query: 150 D-------------PRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQ 182
D P GA GD G G +GP P G RG+
Sbjct: 760 DGVRGLTGPIGPPGPAGAPGDKGESGP-SGPAGPTGARGAPGDRGE 804
Score = 42.4 bits (98), Expect = 2e-04
Identities = 59/179 (32%), Positives = 68/179 (37%), Gaps = 27/179 (15%)
Query: 32 QADLLPRGAKPSNLWGKEGGH----PVVPKAQVKARGGWGEGLELGGSGPTGKARPA--- 84
+ D P+GA S GK+G P+ P A G GE G +GPTG AR A
Sbjct: 745 RGDAGPKGADGSP--GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG-ARGAPGD 801
Query: 85 -SESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR-------------CGW 130
E GP P G + P A G A G A + AG G
Sbjct: 802 RGEPGPPGPA-GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 860
Query: 131 CLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
GARGS A G GA R G G G G GP P G+ RG+T GR
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP-PGPPGPAGKEGGKGPRGETGPAGR 918
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/137 (33%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
P+GA E G P P A G G+ E G GP G A PA E G +G
Sbjct: 585 PKGAAGEPGKAGERGVPGPPGAV----GPAGKDGEAGAQGPPGPAGPAGERG----EQGP 636
Query: 97 SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAK---GERG----- 148
+ +P G+ G A + G G LGA G AR + GERG
Sbjct: 637 AGSPGFQGLPGPAGPPGEAGKPGEQGVPGD-----LGAPGPSGARGERGFPGERGVQGPP 691
Query: 149 --ADPRGAAGDVGFGGA 163
A PRGA G G GA
Sbjct: 692 GPAGPRGANGAPGNDGA 708
Score = 38.5 bits (88), Expect = 0.004
Identities = 46/163 (28%), Positives = 59/163 (36%), Gaps = 25/163 (15%)
Query: 49 EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARP---------ASESGPLTPR-----K 94
E G P P ARG G G GPTG A P E+GP PR +
Sbjct: 309 ERGRPGAP-GPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ 367
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERG----A 149
G P PG A G + G +G+ GA G AR G +G
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Query: 150 DPRGAAGDVGFGGA-----GTGPETPLGRHTPSCMRGQTSRWG 187
P+G +G+ G G+ G P+G P G+ + G
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Score = 38.1 bits (87), Expect = 0.005
Identities = 46/139 (33%), Positives = 53/139 (38%), Gaps = 18/139 (12%)
Query: 59 QVKARGGWGEGLELGGSGPTGKARPASESGPL-----TPRKGASHTPEAPGV----GRAF 109
Q A+G G+ G +GP G A PA GP+ KGA + PG G A
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG 881
Query: 110 RV-----QGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGA 163
RV G A G G G G RG GE G P G AG+ G GA
Sbjct: 882 RVGPPGPSGNAGPPGPPGPAGKEGG--KGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
Query: 164 GTGPETPLGRHTPSCMRGQ 182
GP G P + GQ
Sbjct: 940 -DGPAGAPGTPGPQGIAGQ 957
Score = 38.1 bits (87), Expect = 0.005
Identities = 43/148 (29%), Positives = 51/148 (34%), Gaps = 24/148 (16%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP--------RKGASHTPEAPG 104
P P G G + GG GP G+ PA G + P KG+ G
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAG 944
Query: 105 VGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGA 163
QG A QR G G R G RG GE G P GA+G+
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQR-----GERGFPGLPGPSGEPGKQGPSGASGE------ 993
Query: 164 GTGPETPLGRHTPSCMRGQTSRWGRLAA 191
GP P+G P + G GR A
Sbjct: 994 -RGPPGPMG---PPGLAGPPGESGREGA 1017
Score = 36.2 bits (82), Expect = 0.018
Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 64 GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
G G+ E G +GP G GP+ P + E G A V G R AG
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV-GPVGARGPAGP 1089
Query: 124 EGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGGAGTGPETPLG 172
+G R G G R KG RG P G+ G+ G GA +GP P G
Sbjct: 1090 QGPRGD--KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA-SGPAGPRG 1142
Score = 34.3 bits (77), Expect = 0.067
Identities = 47/154 (30%), Positives = 56/154 (36%), Gaps = 41/154 (26%)
Query: 63 RGGWGEGLELGGSGPTGKARPASE---SGPLTPR-----------------KGASHTPEA 102
RGG G G G G PA E GP P+ KG + +P +
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGS 546
Query: 103 PGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG-------------SGEAREAKGERGA 149
PG G A Q R G G GARG +GE +A GERG
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPP-----GARGQAGVMGFPGPKGAAGEPGKA-GERGV 600
Query: 150 -DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQ 182
P GA G G G G + P G P+ RG+
Sbjct: 601 PGPPGAVGPAGKDGE-AGAQGPPGPAGPAGERGE 633
Score = 33.9 bits (76), Expect = 0.088
Identities = 41/126 (32%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
PV P + RG G G GP G PA GP PR T E G
Sbjct: 1056 PVGPAGKSGDRGETGPAGPAGPVGPVGARGPA---GPQGPRGDKGETGEQGDRGIKGHRG 1112
Query: 113 GTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAG-----TGP 167
+ Q P G GS G +G A G RG P G+AG G G GP
Sbjct: 1113 FSGLQGP-PGPPGSP-----GEQGPSGASGPAGPRG--PPGSAGAPGKDGLNGLPGPIGP 1164
Query: 168 ETPLGR 173
P GR
Sbjct: 1165 PGPRGR 1170
Score = 31.2 bits (69), Expect = 0.57
Identities = 43/152 (28%), Positives = 52/152 (34%), Gaps = 27/152 (17%)
Query: 61 KARGGWGEGLELGGSGPTGKARP------------------ASESGPLTPRKGASHTPEA 102
K+ GG +G SGP G P SGP+ PR G P
Sbjct: 170 KSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPR-GPPGPPGK 228
Query: 103 PGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFG 161
G G +R G +G+R G G+ KG RG + GA GD G
Sbjct: 229 NGDDGEAGKPGRPGERGPPGPQGAR-----GLPGTAGLPGMKGHRGFSGLDGAKGDAGPA 283
Query: 162 GAGTGPETPLGRHTPSCM--RGQTSRWGRLAA 191
G P +P P M RG GR A
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGA 315
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 46.2 bits (108), Expect = 2e-05
Identities = 49/159 (30%), Positives = 60/159 (37%), Gaps = 17/159 (10%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL-----T 91
P+GA E G P P RG G+ E G +GP G A PA E G +
Sbjct: 607 PKGANGEPGKAGEKGLPGAPGL----RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 662
Query: 92 PRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD- 150
+G P PG G QG + G G R G RG R + G +G
Sbjct: 663 GFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-----GERGFPGERGSPGAQGLQG 717
Query: 151 PRGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
PRG G G G +GP P G P ++G G
Sbjct: 718 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 756
Score = 45.1 bits (105), Expect = 4e-05
Identities = 45/144 (31%), Positives = 53/144 (36%), Gaps = 15/144 (10%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
P+ P+ RG G G G G+ PA GP+ P G P PG A
Sbjct: 322 PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG----PGFPGAPGAKGEA 377
Query: 113 GTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGA----- 163
G R G +G R G GS A G G D +G+AG G GA
Sbjct: 378 GPTGARGPEGAQGPRGE--PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 435
Query: 164 GTGPETPLGRHTPSCMRGQTSRWG 187
GP P G P +GQT G
Sbjct: 436 PRGPPGPQGATGPLGPKGQTGEPG 459
Score = 43.9 bits (102), Expect = 8e-05
Identities = 51/163 (31%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 42 PSNLWGKEGG-HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTP 100
P+ G++G P P ARG GE E G GP G A P GA P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP----------PGADGQP 845
Query: 101 EAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERGADPRGAAGDVG 159
A G QG A Q+ AG G + G +G KG RGA +G G G
Sbjct: 846 GAKG------EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA--QGPPGATG 897
Query: 160 FGGAG--------------TGPETPLGRHTPSCMRGQTSRWGR 188
F GA GP P G+ P RG + GR
Sbjct: 898 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR 940
Score = 40.0 bits (92), Expect = 0.001
Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 13/148 (8%)
Query: 37 PRGAK-PSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
P GA P G G G P V + RG G + G G GK A E GP P+
Sbjct: 214 PAGAPGPQGFQGNPGEPGEPGV-SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Query: 94 --KGASHTPEAPGVGRAFRVQGTACQRPRAGTEG----SRCGWCLGARGSGEAREAKGER 147
+G TP PGV G + AG G S G+ G R GER
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 332
Query: 148 G-ADPRGAAGDVGFGG--AGTGPETPLG 172
G P GAAG G G GP P+G
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVG 360
Score = 38.5 bits (88), Expect = 0.004
Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
PRG P G G P+ PK Q G G E G G G A P GP
Sbjct: 436 PRG--PPGPQGATG--PLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR 491
Query: 97 SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG----ADPR 152
E GVG G +R G G G G + A GERG A P+
Sbjct: 492 GARGEPGGVGPI----GPPGERGAPGNRGFP-----GQDGLAGPKGAPGERGPSGLAGPK 542
Query: 153 GAAGDVGFGG-----------AGTGPETPLGRHTPSCMRGQTSRWG 187
GA GD G G G P G+ PS G+ R G
Sbjct: 543 GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 588
Score = 35.8 bits (81), Expect = 0.023
Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 25/139 (17%)
Query: 73 GGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGW 130
G SGP G+A GP P KG G QG A QR G G R
Sbjct: 933 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR--- 989
Query: 131 CLGARG-------SGE-----AREAKGERG----ADPRGAAGDVGFGG--AGTGPETPLG 172
G RG SGE A A G+RG P G G G G G + P G
Sbjct: 990 --GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Query: 173 RHTPSCMRGQTSRWGRLAA 191
R + ++G G + A
Sbjct: 1048 RDGAAGVKGDRGETGAVGA 1066
Score = 35.0 bits (79), Expect = 0.039
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Query: 67 GEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTE 124
GEG + G G G+A GP R G +P A G+ + GT G
Sbjct: 675 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 734
Query: 125 GSRCGWCLGARGSGEAREAKGERGA----DPRGAAGDVGFGG--------AGTGPETPLG 172
G GA+G + GERGA P+G GDVG G G G P+G
Sbjct: 735 GP--AGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 792
Query: 173 RHTPSCMRGQTSRWG 187
P+ G+ G
Sbjct: 793 PPGPAGANGEKGEVG 807
Score = 34.7 bits (78), Expect = 0.051
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 60 VKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFR-VQGTACQR 118
V A G G G +GPTGK E+G P P P R + QG +
Sbjct: 1064 VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM-----GPSGPAGARGIQGPQGPRGDK 1118
Query: 119 PRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAG--TGPETPLGRHTP 176
AG G R G +G +G G P G +GD G G +GP P G P
Sbjct: 1119 GEAGEPGER-----GLKGHRGFTGLQGLPG--PPGPSGDQGASGPAGPSGPRGPPGPVGP 1171
Query: 177 S 177
S
Sbjct: 1172 S 1172
Score = 33.1 bits (74), Expect = 0.15
Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTA 115
P +G GE G GP+G A GP PR E PG +G
Sbjct: 1078 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGE-PG------ERGLK 1130
Query: 116 CQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--AGTGPETPLG 172
R G +G G G + A G G + PRG G VG G G P+G
Sbjct: 1131 GHRGFTGLQG-----LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1185
Query: 173 RHTPSCMRGQTSRWG 187
P G+T G
Sbjct: 1186 PPGPRGRSGETGPAG 1200
Score = 32.3 bits (72), Expect = 0.25
Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 72 LGGSGPTGKARPASESGPLTPR--------------------------KGASHTPEAPGV 105
+G GP G PA E GP R G P PG+
Sbjct: 116 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 175
Query: 106 GRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGG-- 162
G F Q +AG G++ G G G R G GA P+G G+ G G
Sbjct: 176 GGNFAAQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 233
Query: 163 AGTGPETPLGRHTPSCMRGQTSRWGR 188
+GP P G P G G+
Sbjct: 234 GVSGPMGPRGPPGPPGKPGDDGEAGK 259
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 46.2 bits (108), Expect = 2e-05
Identities = 49/159 (30%), Positives = 60/159 (37%), Gaps = 17/159 (10%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL-----T 91
P+GA E G P P RG G+ E G +GP G A PA E G +
Sbjct: 538 PKGANGEPGKAGEKGLPGAPGL----RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 593
Query: 92 PRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD- 150
+G P PG G QG + G G R G RG R + G +G
Sbjct: 594 GFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR-----GERGFPGERGSPGAQGLQG 648
Query: 151 PRGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
PRG G G G +GP P G P ++G G
Sbjct: 649 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 687
Score = 45.1 bits (105), Expect = 4e-05
Identities = 45/144 (31%), Positives = 53/144 (36%), Gaps = 15/144 (10%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQ 112
P+ P+ RG G G G G+ PA GP+ P G P PG A
Sbjct: 253 PMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGG----PGFPGAPGAKGEA 308
Query: 113 GTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGA----- 163
G R G +G R G GS A G G D +G+AG G GA
Sbjct: 309 GPTGARGPEGAQGPRGE--PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPG 366
Query: 164 GTGPETPLGRHTPSCMRGQTSRWG 187
GP P G P +GQT G
Sbjct: 367 PRGPPGPQGATGPLGPKGQTGEPG 390
Score = 43.9 bits (102), Expect = 8e-05
Identities = 51/163 (31%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 42 PSNLWGKEGG-HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTP 100
P+ G++G P P ARG GE E G GP G A P GA P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGP----------PGADGQP 776
Query: 101 EAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERGADPRGAAGDVG 159
A G QG A Q+ AG G + G +G KG RGA +G G G
Sbjct: 777 GAKG------EQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGA--QGPPGATG 828
Query: 160 FGGAG--------------TGPETPLGRHTPSCMRGQTSRWGR 188
F GA GP P G+ P RG + GR
Sbjct: 829 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR 871
Score = 40.0 bits (92), Expect = 0.001
Identities = 50/148 (33%), Positives = 57/148 (38%), Gaps = 13/148 (8%)
Query: 37 PRGAK-PSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
P GA P G G G P V + RG G + G G GK A E GP P+
Sbjct: 145 PAGAPGPQGFQGNPGEPGEPGV-SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Query: 94 --KGASHTPEAPGVGRAFRVQGTACQRPRAGTEG----SRCGWCLGARGSGEAREAKGER 147
+G TP PGV G + AG G S G+ G R GER
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 263
Query: 148 G-ADPRGAAGDVGFGG--AGTGPETPLG 172
G P GAAG G G GP P+G
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVG 291
Score = 38.5 bits (88), Expect = 0.004
Identities = 51/166 (30%), Positives = 57/166 (34%), Gaps = 28/166 (16%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
PRG P G G P+ PK Q G G E G G G A P GP
Sbjct: 367 PRG--PPGPQGATG--PLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKR 422
Query: 97 SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG----ADPR 152
E GVG G +R G G G G + A GERG A P+
Sbjct: 423 GARGEPGGVGPI----GPPGERGAPGNRGFP-----GQDGLAGPKGAPGERGPSGLAGPK 473
Query: 153 GAAGDVGFGG-----------AGTGPETPLGRHTPSCMRGQTSRWG 187
GA GD G G G P G+ PS G+ R G
Sbjct: 474 GANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPG 519
Score = 35.8 bits (81), Expect = 0.023
Identities = 43/139 (30%), Positives = 50/139 (35%), Gaps = 25/139 (17%)
Query: 73 GGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGW 130
G SGP G+A GP P KG G QG A QR G G R
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR--- 920
Query: 131 CLGARG-------SGE-----AREAKGERG----ADPRGAAGDVGFGG--AGTGPETPLG 172
G RG SGE A A G+RG P G G G G G + P G
Sbjct: 921 --GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Query: 173 RHTPSCMRGQTSRWGRLAA 191
R + ++G G + A
Sbjct: 979 RDGAAGVKGDRGETGAVGA 997
Score = 35.0 bits (79), Expect = 0.039
Identities = 40/135 (29%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Query: 67 GEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTE 124
GEG + G G G+A GP R G +P A G+ + GT G
Sbjct: 606 GEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGAS 665
Query: 125 GSRCGWCLGARGSGEAREAKGERGA----DPRGAAGDVGFGG--------AGTGPETPLG 172
G GA+G + GERGA P+G GDVG G G G P+G
Sbjct: 666 GP--AGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 723
Query: 173 RHTPSCMRGQTSRWG 187
P+ G+ G
Sbjct: 724 PPGPAGANGEKGEVG 738
Score = 34.7 bits (78), Expect = 0.051
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query: 60 VKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFR-VQGTACQR 118
V A G G G +GPTGK E+G P P P R + QG +
Sbjct: 995 VGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPM-----GPSGPAGARGIQGPQGPRGDK 1049
Query: 119 PRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAG--TGPETPLGRHTP 176
AG G R G +G +G G P G +GD G G +GP P G P
Sbjct: 1050 GEAGEPGER-----GLKGHRGFTGLQGLPG--PPGPSGDQGASGPAGPSGPRGPPGPVGP 1102
Query: 177 S 177
S
Sbjct: 1103 S 1103
Score = 33.1 bits (74), Expect = 0.15
Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 15/135 (11%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTA 115
P +G GE G GP+G A GP PR E PG +G
Sbjct: 1009 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGE-PG------ERGLK 1061
Query: 116 CQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--AGTGPETPLG 172
R G +G G G + A G G + PRG G VG G G P+G
Sbjct: 1062 GHRGFTGLQG-----LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1116
Query: 173 RHTPSCMRGQTSRWG 187
P G+T G
Sbjct: 1117 PPGPRGRSGETGPAG 1131
Score = 32.3 bits (72), Expect = 0.25
Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 72 LGGSGPTGKARPASESGPLTPR--------------------------KGASHTPEAPGV 105
+G GP G PA E GP R G P PG+
Sbjct: 47 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGL 106
Query: 106 GRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGG-- 162
G F Q +AG G++ G G G R G GA P+G G+ G G
Sbjct: 107 GGNFAAQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 164
Query: 163 AGTGPETPLGRHTPSCMRGQTSRWGR 188
+GP P G P G G+
Sbjct: 165 GVSGPMGPRGPPGPPGKPGDDGEAGK 190
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 45.4 bits (106), Expect = 3e-05
Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 18/186 (9%)
Query: 12 GKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGE--- 68
G+ GP G R V AD + RG K + E G P K + +G GE
Sbjct: 776 GQGPPGPQGPIGYPGPRGVKGADGI-RGLKGTKGEKGEDGFPGF-KGDMGIKGDRGEIGP 833
Query: 69 ---GLELGGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
E G GP G+ P + GPL P KG P PG +G+ G
Sbjct: 834 PGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGA 893
Query: 124 EGSRCGWCL----GARGSGEAREAKGERGADPRGAAGDVGFGG--AGTGPETPLGRHTPS 177
G + G G RG +GERG PRG G G G G GP P G P+
Sbjct: 894 NGEKGGRGTPGKPGPRGQRGPTGPRGERG--PRGITGKPGPKGNSGGDGPAGPPGERGPN 951
Query: 178 CMRGQT 183
+G T
Sbjct: 952 GPQGPT 957
Score = 38.5 bits (88), Expect = 0.004
Identities = 41/138 (29%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQG 113
PK + G G E GG G GK P + GP PR +G PG G
Sbjct: 881 PKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDG 940
Query: 114 TACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGAGTGPET 169
A G G + G G + G G D G G+ GF G TGP
Sbjct: 941 PAGPPGERGPNGPQ-----GPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 994
Query: 170 PLGRHTPSCMRGQTSRWG 187
P G P G+T G
Sbjct: 995 PPGVVGPQGPTGETGPMG 1012
Score = 35.8 bits (81), Expect = 0.023
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 17/143 (11%)
Query: 36 LPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKG 95
LP A P G++G + + K G G+ E G GPTG P + GP G
Sbjct: 1142 LPGPAGPVGPPGEDGDKGEIGEPGQK--GSKGDKGEQGPPGPTGPQGPIGQPGP----SG 1195
Query: 96 ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG----ADP 151
A P G F +G R G G +G +G KGE G P
Sbjct: 1196 ADGEPGPRGQQGLFGQKGDEGPRGFPGPPGP-----VGLQGLPGPPGEKGETGDVGQMGP 1250
Query: 152 RGAAGDVGFGGA--GTGPETPLG 172
G G G GA GP+ P G
Sbjct: 1251 PGPPGPRGPSGAPGADGPQGPPG 1273
Score = 34.7 bits (78), Expect = 0.051
Identities = 43/140 (30%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 54 VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP-----LTPRKGASHTPEAPG-VGR 107
V P+ + G G G GP G P E GP L GA P PG G
Sbjct: 711 VGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGP 770
Query: 108 AFRVQGTACQRPRA--GTEGSRCGWCLGARGSGEAREAKGERGADP-RGAAGDVGFGG-- 162
G P+ G G R GA G + KGE+G D G GD+G G
Sbjct: 771 PGEKGGQGPPGPQGPIGYPGPR--GVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDR 828
Query: 163 AGTGPETPLGRHTPSCMRGQ 182
GP P G P +G+
Sbjct: 829 GEIGPPGPRGEDGPEGPKGR 848
Score = 34.3 bits (77), Expect = 0.067
Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 26/168 (15%)
Query: 42 PSNLWGKEG-----GHP-----VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL- 90
P+ L GK+G G P P + +G G G +G G+ PA +GP+
Sbjct: 1043 PAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIG 1102
Query: 91 -TPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG- 148
R G P G A +G R G +G +G G GE G
Sbjct: 1103 IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGP-----VGLPGPAGPVGPPGEDGD 1157
Query: 149 ----ADP--RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWGR 188
+P +G+ GD G G TGP+ P+G+ PS G+ G+
Sbjct: 1158 KGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ 1205
Score = 31.2 bits (69), Expect = 0.57
Identities = 45/150 (30%), Positives = 56/150 (37%), Gaps = 14/150 (9%)
Query: 49 EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL--TPRKGASHTPEAPGVG 106
E G P +P + G GE E G SGP+G A P GP KG+ PG
Sbjct: 1289 EAGEPGLP-GEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDP 1347
Query: 107 RAFRVQGTACQRPRAGTEG-----SRCGWCLGARGSGEAREAKGERG----ADPRGAAGD 157
G A Q G +G + G G G G+RG A P G G+
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTG-SPGPTGEPGPSGPPGKRGPPGPAGPEGRQGE 1406
Query: 158 VGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G G G E P G+ P +G + G
Sbjct: 1407 KGAKGE-AGLEGPPGKTGPIGPQGAPGKPG 1435
Score = 30.0 bits (66), Expect = 1.3
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEG--------GHP-----VVPKAQVKAR 63
GPV +Q + G D P P L G +G GHP + P + +
Sbjct: 1444 GPVGEQGLPGS---PGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEK 1500
Query: 64 GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
G G G SGP G+ SGP+ P G P PG A G + AG
Sbjct: 1501 GDRGLPGPQGSSGPKGEQGITGPSGPIGP-PGPPGLPGPPGPKGAKGSSGPTGPKGEAGH 1559
Query: 124 EG 125
G
Sbjct: 1560 PG 1561
Score = 29.3 bits (64), Expect = 2.2
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 33/125 (26%)
Query: 72 LGGSGPTGKARPASESGPLTP-----------------RKGASHTPEAPGVGRAFRVQGT 114
+G GPTG+ P E G P KG PG ++G
Sbjct: 999 VGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGF 1058
Query: 115 ACQRPRAGTEGSRCGWCLGARGS-------GEAREAKGERGADPRGAAGDVGFGGAGTGP 167
R G G+ LG +G+ G A + GERG P GAAG +G G GP
Sbjct: 1059 PGDRGLPGPVGA-----LGLKGNEGPPGPPGPA-GSPGERG--PAGAAGPIGIPGR-PGP 1109
Query: 168 ETPLG 172
+ P G
Sbjct: 1110 QGPPG 1114
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 43.1 bits (100), Expect = 1e-04
Identities = 45/135 (33%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 63 RGGWGEGLELGGSGPTGKARPASESGPLTP--RKGASHTPEAPGVGRAFRVQGTACQRPR 120
RG G E G +GPTG SGP P KG A G G +R
Sbjct: 588 RGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGA 647
Query: 121 AGTEGSR-------CGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGGAGTGPETPLG 172
AG G + +G G AR A G GA P GA GD G GA GP P G
Sbjct: 648 AGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGA-AGPAGPAG 706
Query: 173 RHTPSCMRGQTSRWG 187
RG+ G
Sbjct: 707 PRGSPGERGEVGPAG 721
Score = 40.4 bits (93), Expect = 0.001
Identities = 52/150 (34%), Positives = 62/150 (41%), Gaps = 26/150 (17%)
Query: 37 PRG-AKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP--R 93
P G A P+ G+ G K + A+G GE +G +GP G A PA +GP P
Sbjct: 722 PNGFAGPAGAAGQPGA-----KGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGS 776
Query: 94 KGASHTPEAPGV-GRAFR--------VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAK 144
+G P G G A R + G AG EG R G RG
Sbjct: 777 RGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR-----GPRGDQGPVGRT 831
Query: 145 GERGA-DPRGAAGDVG-FGGAGTG--PETP 170
GE GA P G AG+ G G AGT P TP
Sbjct: 832 GEVGAVGPPGFAGEKGPSGEAGTAGPPGTP 861
Score = 38.9 bits (89), Expect = 0.003
Identities = 46/161 (28%), Positives = 56/161 (34%), Gaps = 27/161 (16%)
Query: 49 EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP-----RKGASHTPEAP 103
E G P Q ARG GE +G GP G GP+ P G P AP
Sbjct: 206 ENGTP----GQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 261
Query: 104 GVGRAFRVQGTACQRPRAGTEGS----RCGWCLGARGSGEAREAKGERGA---------- 149
G G A AG G +G G+ A G +GA
Sbjct: 262 GPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAP 321
Query: 150 ---DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
PRG G VG GA TG +G P+ +G++ G
Sbjct: 322 GLPGPRGIPGPVGAAGA-TGARGLVGEPGPAGSKGESGNKG 361
Score = 37.4 bits (85), Expect = 0.008
Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 20/150 (13%)
Query: 37 PRGAK-PSNLWGKEGGHPVVPK-AQVKARGGWGEGLELGGSGPTGKARPASESGPLTP-- 92
PRG P G G +V + ++G G E G +GP G P+ E G P
Sbjct: 326 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNG 385
Query: 93 RKGASHTPEAPGVGRAFRVQGTACQRPRAGT---EGSRCGWCLGARGSGEAREAKGERG- 148
G++ P PG+ + +G RAG GSR GA G R G+ G
Sbjct: 386 EAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSR-----GASGPAGVRGPNGDAGR 440
Query: 149 ------ADPRGAAGDVGFGGAGTGPETPLG 172
PRG G G G G E P+G
Sbjct: 441 PGEPGLMGPRGLPGSPGNIGP-AGKEGPVG 469
Score = 35.8 bits (81), Expect = 0.023
Identities = 43/135 (31%), Positives = 50/135 (37%), Gaps = 7/135 (5%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTA 115
P RG GE E+G +GP G A PA +G + GA A G V G
Sbjct: 701 PAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG----QPGAKGERGAKGPKGENGVVGPT 756
Query: 116 CQRPRAGTEG-SRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPETPLGR 173
AG G + G+RG G G GA R G G G G GP P G+
Sbjct: 757 GPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGP-PGPPGPAGK 815
Query: 174 HTPSCMRGQTSRWGR 188
RG GR
Sbjct: 816 EGLRGPRGDQGPVGR 830
Score = 32.0 bits (71), Expect = 0.33
Identities = 37/137 (27%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQG 113
P RG G G +GP G E GP P G + PG +G
Sbjct: 686 PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKG 745
Query: 114 TACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGGAG--TGPETP 170
+ G G +GA G G G+ G G GF GA TGP P
Sbjct: 746 PKGENGVVGPTGP-----VGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800
Query: 171 LGRHTPSCMRGQTSRWG 187
G P G + G
Sbjct: 801 SGISGPPGPPGPAGKEG 817
Score = 31.6 bits (70), Expect = 0.43
Identities = 51/183 (27%), Positives = 61/183 (33%), Gaps = 32/183 (17%)
Query: 39 GAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPA------------ 84
G P L G G G P Q +G GE E G +GP G PA
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQ-GFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHP 147
Query: 85 ------SESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR----CGWCL 132
E G + P+ +G TP PG G + + G G +
Sbjct: 148 GKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGEN 207
Query: 133 GARGSGEAREAKGERG----ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
G G AR GERG P GA G G G GP P+G P G G
Sbjct: 208 GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP-VGPAGPIGSAGPPGFPGAPGPKGE 266
Query: 189 LAA 191
+ A
Sbjct: 267 IGA 269
Score = 30.4 bits (67), Expect = 0.97
Identities = 44/158 (27%), Positives = 48/158 (30%), Gaps = 29/158 (18%)
Query: 37 PRGAKPSNLWGKEGGH-PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-- 93
P P G G H PV P + RG E G SGP G A GP P+
Sbjct: 951 PGNIGPVGAAGAPGPHGPVGPAGKHGNRG------ETGPSGPVGPAGAVGPRGPSGPQGI 1004
Query: 94 ---------KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAK 144
KG P G + G A G GS +G G
Sbjct: 1005 RGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGS-----VGPAGPRGPAGPS 1059
Query: 145 GERGADPR----GAAGDVGFGG--AGTGPETPLGRHTP 176
G G D R G G G G GP P G P
Sbjct: 1060 GPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGP 1097
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.4 bits (98), Expect = 2e-04
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 63 RGGWGEGLELGGSGPTGKARPASESG-PLTP-RKGASHTPEAPGVGRAFRVQGTACQRPR 120
RGG GE + G G G E+G P P KG +PG A + G A +R
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGA 487
Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGAD----PRGAAGDVGFGGAGTGP 167
G G G G + GERGA PRGAAG+ G G GP
Sbjct: 488 PGFRGPA-----GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGP 533
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/128 (32%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 63 RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAG 122
+G GE G G GK P +GP+ P G + P G G A + G A R G
Sbjct: 740 KGDKGEPGGPGADGVPGKDGPRGPTGPIGP-PGPAGQPGDKGEGGAPGLPGIAGPRGSPG 798
Query: 123 TEGSR-----CGWCLGARGSGEAREAKGERGA-DPRGAAGDVGFGG--AGTGPETPLGRH 174
G G+ GA G KGERGA +G G G G G+GP P G
Sbjct: 799 ERGETGPPGPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG-- 855
Query: 175 TPSCMRGQ 182
P ++G+
Sbjct: 856 -PQGVKGE 862
Score = 38.1 bits (87), Expect = 0.005
Identities = 47/142 (33%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 42 PSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP------- 92
PS G+ G G P PK A G GE GG GP G E+GP P
Sbjct: 568 PSGPRGQPGVMGFPG-PKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPG 626
Query: 93 -RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSR-CGWCLGARGSGEAREAKGERGAD 150
KG + P G+ G + + G G + GA G A GERG
Sbjct: 627 GDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERG-- 684
Query: 151 PRGAAGDVGFGGAGTGPETPLG 172
P G AG G G G GP P G
Sbjct: 685 PPGLAGAPGLRG-GAGPPGPEG 705
Score = 35.4 bits (80), Expect = 0.030
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 47 GKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPG 104
G+ GG K + A G GEG G +GP G + PA GP + +G+ P A G
Sbjct: 819 GEPGG-----KGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG 873
Query: 105 VGRAFRVQGTACQRPRAGTEG-SRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
A + G G G S G G A G G + P+G AG G G
Sbjct: 874 FPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKG 933
Query: 163 AGTGPETPLGRHTPSCMRGQTSRWG 187
+ G + P G P + G T G
Sbjct: 934 S-PGAQGPPGAPGPLGIAGITGARG 957
Score = 35.4 bits (80), Expect = 0.030
Identities = 44/143 (30%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 51 GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESG---PLTPRKGASHTPEAPGVGR 107
GHP P V G G+ E G +GP G PA G P PR T E G
Sbjct: 1047 GHPG-PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAG- 1104
Query: 108 AFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--AG 164
++G R G G+ G+ G + A G G A PRG G G G
Sbjct: 1105 ---IKG---HRGFPGNPGAP-----GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGT 1153
Query: 165 TGPETPLGRHTPSCMRGQTSRWG 187
+G P+G P RG+ G
Sbjct: 1154 SGHPGPIGPPGPRGNRGERGSEG 1176
Score = 34.7 bits (78), Expect = 0.051
Identities = 42/146 (28%), Positives = 51/146 (34%), Gaps = 26/146 (17%)
Query: 37 PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPL---- 90
P A P G G GHP P + +G GE + G SGP G SGP
Sbjct: 173 PGPAGPPGPPGPPGTSGHPGSPGSP-GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDG 231
Query: 91 ----TPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
R G P PG+ + G + G +G G +G A KGE
Sbjct: 232 ESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRN-----GEKGETGAPGLKGE 286
Query: 147 RG----------ADPRGAAGDVGFGG 162
G PRGA G+ G G
Sbjct: 287 NGLPGENGAPGPMGPRGAPGERGRPG 312
Score = 33.5 bits (75), Expect = 0.11
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 62 ARGGWGEGLELGGSGPTGKARPAS---ESGPLTPR--KGASHTPEAPGVGRAFRVQGTAC 116
A GG G+ G GP G A +GP P KGA+ P PG +QG
Sbjct: 670 APGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPG 729
Query: 117 QRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
+R G GS + KGE G GA G G G GP P+G P
Sbjct: 730 ER--------------GGLGSPGPKGDKGEPGGP--GADGVPGKDGP-RGPTGPIGPPGP 772
Query: 177 SCMRGQTSRWG 187
+ G G
Sbjct: 773 AGQPGDKGEGG 783
Score = 33.1 bits (74), Expect = 0.15
Identities = 43/146 (29%), Positives = 55/146 (37%), Gaps = 13/146 (8%)
Query: 33 ADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKA-RPASESGPLT 91
A+ LP A G G P P +G GE G +GP G A P + P
Sbjct: 475 ANGLPGAAGERGAPGFRG--PAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG 532
Query: 92 P-RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD 150
P +G +P PG G+ + R G G G RG G +G D
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS-----GPRGQPGVMGFPGPKGND 587
Query: 151 PRGAAGDVGFGGA--GTGPETPLGRH 174
GA G G G G GP+ P G++
Sbjct: 588 --GAPGKNGERGGPGGPGPQGPPGKN 611
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 57 KAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGT 114
+ +V G GE G GP G+ P + GP L KG P PG +G+
Sbjct: 670 RGEVGVPGSRGED---GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 726
Query: 115 ACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGG--AGT 165
G G + GARG +GERG PRGA G G G G
Sbjct: 727 LGFPGFPGASGEK-----GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 781
Query: 166 GPETPLG 172
GP P G
Sbjct: 782 GPHGPPG 788
Score = 42.0 bits (97), Expect = 3e-04
Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 42 PSNLWGKEG--------GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLT 91
P L G++G G+P PK + G G E G G +GK+ P E GP
Sbjct: 699 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 758
Query: 92 PR-----KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
PR +GA+ A G G +R G +G G G G+
Sbjct: 759 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-----GFPGPKGPPGPPGK 813
Query: 147 RGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G G G+VGF G TGP P G P G+T G
Sbjct: 814 DGLPGHPGQRGEVGFQGK-TGPPGPPGVVGPQGAAGETGPMG 854
Score = 38.5 bits (88), Expect = 0.004
Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 29/169 (17%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGH-------PVVPKAQVKARGGWGEG 69
GPV Q G AD P P +G +G P P G GE
Sbjct: 1028 GPVGQPGAAG------ADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1081
Query: 70 LELGGSGPTGKARPASESGPLTPRKGASHTPEAP--GVGRAFRVQGTACQRPRAGTEGSR 127
E G GP G P GP P + P+ P GVG G ++ G GS
Sbjct: 1082 GETGDVGPMGPPGPPGPRGPAGP--NGADGPQGPPGGVGNL----GPPGEKGEPGESGSP 1135
Query: 128 CGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
G +G + +GERG +G +G G G GP+ P G P
Sbjct: 1136 -----GIQGEPGVKGPRGERG--EKGESGQPGEPGP-PGPKGPTGDDGP 1176
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 67 GEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS 126
GE G GPTG P GP+ G P PG G G R G G
Sbjct: 1160 GEPGPPGPKGPTGDDGPKGNPGPV----GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1215
Query: 127 RCG----------WCLGARGSGEAREAKGERGADPRGAAGDVGFGGA-----GTGPETPL 171
LG RG + ++G +G +GA GD G GA GP P
Sbjct: 1216 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG--KGAKGDPGAIGAPGKTGPVGPAGPA 1273
Query: 172 GRHTPSCMRG 181
G+ P +RG
Sbjct: 1274 GKPGPDGLRG 1283
Score = 37.7 bits (86), Expect = 0.006
Identities = 52/158 (32%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--K 94
PRG N G +G P P V G GE E G SG G GP R K
Sbjct: 1098 PRGPAGPN--GADG--PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1153
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE---AKGERGADP 151
G S P PG G + G G G G G R AKG+RG D
Sbjct: 1154 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGED- 1210
Query: 152 RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
G G G G GP PLG+ P+ G R G
Sbjct: 1211 -GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1247
Score = 31.6 bits (70), Expect = 0.43
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)
Query: 36 LPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
LP + P L G +G G P P + G++ G GP G P E GP +
Sbjct: 516 LPGESGPRGLLGPKGPPGIPGPPGVR---------GMD-GPQGPKGSLGPQGEPGP-PGQ 564
Query: 94 KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRG 153
+G T PG A G + + G G GS G+ G P G
Sbjct: 565 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP--------GMPGSDGPPGHPGKEG--PPG 614
Query: 154 AAGDVGFGGAGTGPETPLGRHTPSCMRG 181
G+ G +GP+ PLG P ++G
Sbjct: 615 TKGNQG----PSGPQGPLGYPGPRGVKG 638
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 57 KAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGT 114
+ +V G GE G GP G+ P + GP L KG P PG +G+
Sbjct: 649 RGEVGVPGSRGED---GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 705
Query: 115 ACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGG--AGT 165
G G + GARG +GERG PRGA G G G G
Sbjct: 706 LGFPGFPGASGEK-----GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 760
Query: 166 GPETPLG 172
GP P G
Sbjct: 761 GPHGPPG 767
Score = 42.0 bits (97), Expect = 3e-04
Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 42 PSNLWGKEG--------GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLT 91
P L G++G G+P PK + G G E G G +GK+ P E GP
Sbjct: 678 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 737
Query: 92 PR-----KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
PR +GA+ A G G +R G +G G G G+
Sbjct: 738 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-----GFPGPKGPPGPPGK 792
Query: 147 RGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G G G+VGF G TGP P G P G+T G
Sbjct: 793 DGLPGHPGQRGEVGFQGK-TGPPGPPGVVGPQGAAGETGPMG 833
Score = 38.5 bits (88), Expect = 0.004
Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 29/169 (17%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGH-------PVVPKAQVKARGGWGEG 69
GPV Q G AD P P +G +G P P G GE
Sbjct: 1007 GPVGQPGAAG------ADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1060
Query: 70 LELGGSGPTGKARPASESGPLTPRKGASHTPEAP--GVGRAFRVQGTACQRPRAGTEGSR 127
E G GP G P GP P + P+ P GVG G ++ G GS
Sbjct: 1061 GETGDVGPMGPPGPPGPRGPAGP--NGADGPQGPPGGVGNL----GPPGEKGEPGESGSP 1114
Query: 128 CGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
G +G + +GERG +G +G G G GP+ P G P
Sbjct: 1115 -----GIQGEPGVKGPRGERG--EKGESGQPGEPGP-PGPKGPTGDDGP 1155
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 67 GEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS 126
GE G GPTG P GP+ G P PG G G R G G
Sbjct: 1139 GEPGPPGPKGPTGDDGPKGNPGPV----GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1194
Query: 127 RCG----------WCLGARGSGEAREAKGERGADPRGAAGDVGFGGA-----GTGPETPL 171
LG RG + ++G +G +GA GD G GA GP P
Sbjct: 1195 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG--KGAKGDPGAIGAPGKTGPVGPAGPA 1252
Query: 172 GRHTPSCMRG 181
G+ P +RG
Sbjct: 1253 GKPGPDGLRG 1262
Score = 37.7 bits (86), Expect = 0.006
Identities = 52/158 (32%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--K 94
PRG N G +G P P V G GE E G SG G GP R K
Sbjct: 1077 PRGPAGPN--GADG--PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1132
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE---AKGERGADP 151
G S P PG G + G G G G G R AKG+RG D
Sbjct: 1133 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGED- 1189
Query: 152 RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
G G G G GP PLG+ P+ G R G
Sbjct: 1190 -GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1226
Score = 31.6 bits (70), Expect = 0.43
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)
Query: 36 LPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
LP + P L G +G G P P + G++ G GP G P E GP +
Sbjct: 495 LPGESGPRGLLGPKGPPGIPGPPGVR---------GMD-GPQGPKGSLGPQGEPGP-PGQ 543
Query: 94 KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRG 153
+G T PG A G + + G G GS G+ G P G
Sbjct: 544 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP--------GMPGSDGPPGHPGKEG--PPG 593
Query: 154 AAGDVGFGGAGTGPETPLGRHTPSCMRG 181
G+ G +GP+ PLG P ++G
Sbjct: 594 TKGNQG----PSGPQGPLGYPGPRGVKG 617
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 57 KAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGT 114
+ +V G GE G GP G+ P + GP L KG P PG +G+
Sbjct: 756 RGEVGVPGSRGED---GPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGS 812
Query: 115 ACQRPRAGTEGSRCGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGFGG--AGT 165
G G + GARG +GERG PRGA G G G G
Sbjct: 813 LGFPGFPGASGEK-----GARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGD 867
Query: 166 GPETPLG 172
GP P G
Sbjct: 868 GPHGPPG 874
Score = 42.0 bits (97), Expect = 3e-04
Identities = 48/162 (29%), Positives = 61/162 (37%), Gaps = 22/162 (13%)
Query: 42 PSNLWGKEG--------GHP--VVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLT 91
P L G++G G+P PK + G G E G G +GK+ P E GP
Sbjct: 785 PPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTG 844
Query: 92 PR-----KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGE 146
PR +GA+ A G G +R G +G G G G+
Sbjct: 845 PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPN-----GFPGPKGPPGPPGK 899
Query: 147 RGADPR-GAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G G G+VGF G TGP P G P G+T G
Sbjct: 900 DGLPGHPGQRGEVGFQGK-TGPPGPPGVVGPQGAAGETGPMG 940
Score = 38.5 bits (88), Expect = 0.004
Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 29/169 (17%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGH-------PVVPKAQVKARGGWGEG 69
GPV Q G AD P P +G +G P P G GE
Sbjct: 1114 GPVGQPGAAG------ADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEK 1167
Query: 70 LELGGSGPTGKARPASESGPLTPRKGASHTPEAP--GVGRAFRVQGTACQRPRAGTEGSR 127
E G GP G P GP P + P+ P GVG G ++ G GS
Sbjct: 1168 GETGDVGPMGPPGPPGPRGPAGP--NGADGPQGPPGGVGNL----GPPGEKGEPGESGSP 1221
Query: 128 CGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTP 176
G +G + +GERG +G +G G G GP+ P G P
Sbjct: 1222 -----GIQGEPGVKGPRGERG--EKGESGQPGEPGP-PGPKGPTGDDGP 1262
Score = 38.1 bits (87), Expect = 0.005
Identities = 39/130 (30%), Positives = 47/130 (36%), Gaps = 21/130 (16%)
Query: 67 GEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS 126
GE G GPTG P GP+ G P PG G G R G G
Sbjct: 1246 GEPGPPGPKGPTGDDGPKGNPGPV----GFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQ 1301
Query: 127 RCG----------WCLGARGSGEAREAKGERGADPRGAAGDVGFGGA-----GTGPETPL 171
LG RG + ++G +G +GA GD G GA GP P
Sbjct: 1302 PGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGG--KGAKGDPGAIGAPGKTGPVGPAGPA 1359
Query: 172 GRHTPSCMRG 181
G+ P +RG
Sbjct: 1360 GKPGPDGLRG 1369
Score = 37.7 bits (86), Expect = 0.006
Identities = 52/158 (32%), Positives = 57/158 (36%), Gaps = 15/158 (9%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR--K 94
PRG N G +G P P V G GE E G SG G GP R K
Sbjct: 1184 PRGPAGPN--GADG--PQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1239
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEARE---AKGERGADP 151
G S P PG G + G G G G G R AKG+RG D
Sbjct: 1240 GESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD--PGPPGEGGPRGQDGAKGDRGED- 1296
Query: 152 RGAAGDVGFGG--AGTGPETPLGRHTPSCMRGQTSRWG 187
G G G G GP PLG+ P+ G R G
Sbjct: 1297 -GEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQG 1333
Score = 31.6 bits (70), Expect = 0.43
Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 27/148 (18%)
Query: 36 LPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
LP + P L G +G G P P + G++ G GP G P E GP +
Sbjct: 602 LPGESGPRGLLGPKGPPGIPGPPGVR---------GMD-GPQGPKGSLGPQGEPGP-PGQ 650
Query: 94 KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRG 153
+G T PG A G + + G G GS G+ G P G
Sbjct: 651 QGTPGTQGLPGPQGAIGPHGEKGPQGKPGLP--------GMPGSDGPPGHPGKEG--PPG 700
Query: 154 AAGDVGFGGAGTGPETPLGRHTPSCMRG 181
G+ G +GP+ PLG P ++G
Sbjct: 701 TKGNQG----PSGPQGPLGYPGPRGVKG 724
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 41.6 bits (96), Expect = 4e-04
Identities = 56/174 (32%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 32 QADLLPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELG------------GSGP 77
+ D PRG K G G G P P + RG GE +LG G G
Sbjct: 1930 RGDKGPRGEKGER--GDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGE 1987
Query: 78 TGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGAR 135
TGK GP + KG P G QG A G G + G R
Sbjct: 1988 TGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQ--GISGPR 2045
Query: 136 GSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
GSG A A GERG P G G+ G GP+ +G P RG+T GR
Sbjct: 2046 GSGGAAGAPGERGRTGPLGRKGEPG----EPGPKGGIGNRGP---RGETGDDGR 2092
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 41.6 bits (96), Expect = 4e-04
Identities = 56/174 (32%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 32 QADLLPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELG------------GSGP 77
+ D PRG K G G G P P + RG GE +LG G G
Sbjct: 2136 RGDKGPRGEKGER--GDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGE 2193
Query: 78 TGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGAR 135
TGK GP + KG P G QG A G G + G R
Sbjct: 2194 TGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQ--GISGPR 2251
Query: 136 GSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
GSG A A GERG P G G+ G GP+ +G P RG+T GR
Sbjct: 2252 GSGGAAGAPGERGRTGPLGRKGEPG----EPGPKGGIGNRGP---RGETGDDGR 2298
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 41.6 bits (96), Expect = 4e-04
Identities = 56/174 (32%), Positives = 65/174 (37%), Gaps = 28/174 (16%)
Query: 32 QADLLPRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELG------------GSGP 77
+ D PRG K G G G P P + RG GE +LG G G
Sbjct: 1529 RGDKGPRGEKGER--GDVGIRGDPGNPGQDSQERGPKGETGDLGPMGVPGRDGVPGGPGE 1586
Query: 78 TGKARPASESGPLTPR--KGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGAR 135
TGK GP + KG P G QG A G G + G R
Sbjct: 1587 TGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLIGEQ--GISGPR 1644
Query: 136 GSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGR 188
GSG A A GERG P G G+ G GP+ +G P RG+T GR
Sbjct: 1645 GSGGAAGAPGERGRTGPLGRKGEPG----EPGPKGGIGNRGP---RGETGDDGR 1691
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 92 PRKGASHTPEAPGVGRAFRVQGTACQRP--RAGTEGSRCGWCLGARGSGEAREAKGERGA 149
P G S + PG GR + QRP A + +R G G G A ++ G+ G
Sbjct: 19 PSGGGSGQAQRPGPGRGSWRRPPRRQRPGPAAPSPPARGAAAWGRSGGGPAAQSGGDGGG 78
Query: 150 DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
PR A + G G G+G P GR + + G
Sbjct: 79 LPRRAGAEPGGRGGGSGGTMPGGRRAAAWLTG 110
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 41.2 bits (95), Expect = 5e-04
Identities = 44/144 (30%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 36 LPRGAKPSN---LWGKEGGHPVVPKAQVKAR--------GGWGEGLELGGSGPTGKARPA 84
+PRG P L GK+ + + P + + R GG G G GG+G G+AR
Sbjct: 15 VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
Query: 85 SESGPLTPRKGASHTPEAP----GVGRAFRVQGTACQR---PRAGTEGSRCGWCLGARGS 137
+ESG R+ AP G G A R + P G EG G RG
Sbjct: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG-------GERGE 127
Query: 138 GEAREAKGE----RGADPRGAAGD 157
A E + E RG R +AG+
Sbjct: 128 ESASERESERAPGRGPGARSSAGE 151
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 41.2 bits (95), Expect = 5e-04
Identities = 44/144 (30%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 36 LPRGAKPSN---LWGKEGGHPVVPKAQVKAR--------GGWGEGLELGGSGPTGKARPA 84
+PRG P L GK+ + + P + + R GG G G GG+G G+AR
Sbjct: 15 VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
Query: 85 SESGPLTPRKGASHTPEAP----GVGRAFRVQGTACQR---PRAGTEGSRCGWCLGARGS 137
+ESG R+ AP G G A R + P G EG G RG
Sbjct: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG-------GERGE 127
Query: 138 GEAREAKGE----RGADPRGAAGD 157
A E + E RG R +AG+
Sbjct: 128 ESASERESERAPGRGPGARSSAGE 151
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 40.8 bits (94), Expect = 7e-04
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGG-- 74
GP G R V AD + RG K S E G P K + +G GE ++G
Sbjct: 763 GPQGPIGYPGPRGVKGADGV-RGLKGSKGEKGEDGFPGF-KGDMGLKGDRGEVGQIGPRG 820
Query: 75 ----SGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRC 128
GP G+A P + GP KG P PG +G+ G G +
Sbjct: 821 EDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEK- 879
Query: 129 GWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--------AGTGPETPLGRHTPSCM 179
GARG +G+RG PRG+ G G G G GP P G P
Sbjct: 880 ----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 935
Query: 180 RG 181
+G
Sbjct: 936 QG 937
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGR 107
P P+ ARG G+ G SG G P E GP P+ G P PG
Sbjct: 896 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKD- 954
Query: 108 AFRVQGTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
+ G QR G +G G +G +G GERG P G G+ G G
Sbjct: 955 --GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPG 1012
Query: 163 AG--------TGPETPLGRHTPSCMRG 181
A GP+ G+ P+ +RG
Sbjct: 1013 AAGKEGAKGDPGPQGISGKDGPAGLRG 1039
Score = 37.4 bits (85), Expect = 0.008
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 64 GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
G GE ++G GP G P GP GA PG + G + AG
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGP----NGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1274
Query: 124 EGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTP 176
G G G G + +GE+G A P GAAG G G G + P G P
Sbjct: 1275 PGPP-----GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PGDDGPKGNPGP 1322
Score = 37.0 bits (84), Expect = 0.010
Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 42/179 (23%)
Query: 12 GKVTEGP-VTQQHVKGCRLVAQADLLPRGAK-PSNLWGKEGGHPVVPKAQVKARGGWGEG 69
G ++GP ++ Q + ++ QA + RG P L G+ G
Sbjct: 513 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG------------------- 553
Query: 70 LELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCG 129
+GG G +G + + GP PR P P G +R R G +
Sbjct: 554 -PVGGPGSSGAKGESGDPGPQGPR--GVQGPPGP--------TGKPGKRGRPGAD----- 597
Query: 130 WCLGARGSGEAREAKGERGADP-RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G RG AKG+RG D G GD G G GP+ P G MRG+ G
Sbjct: 598 ---GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE-RGPQGPPGPPGDDGMRGEDGEIG 652
Score = 37.0 bits (84), Expect = 0.010
Identities = 51/191 (26%), Positives = 69/191 (36%), Gaps = 41/191 (21%)
Query: 36 LPRGAKPSNLWGKEG-----GHPVV--------PKAQVKARGGWGEGLELGGSGPTGKAR 82
LP A P L G G G P + PK + +G G + G GP G
Sbjct: 656 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 715
Query: 83 PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS--------RCGW---- 130
P GP KG P G+ A G + ++G +G+ G+
Sbjct: 716 PQGPIGP-PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 774
Query: 131 -CLGARGSGEAREAKGERGAD-------------PRGAAGDVGFGGAGTGPETPLGRHTP 176
GA G + +KGE+G D RG G +G G GPE P GR P
Sbjct: 775 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE-DGPEGPKGRAGP 833
Query: 177 SCMRGQTSRWG 187
+ G + + G
Sbjct: 834 TGDPGPSGQAG 844
Score = 36.2 bits (82), Expect = 0.018
Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 37 PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRK 94
P+G P GK+G GHP Q G G+ G G G P E+GP+
Sbjct: 944 PKG--PPGPPGKDGLPGHP----GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI---- 993
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGA 154
G P PG + G A + G G + G G R GERG GA
Sbjct: 994 GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ--GISGKDGPAGLRGFPGERGLP--GA 1049
Query: 155 AGDVGFGGAGTGPETPLG 172
G G G G GP+ P G
Sbjct: 1050 QGAPGLKG-GEGPQGPPG 1066
Score = 36.2 bits (82), Expect = 0.018
Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 46/166 (27%)
Query: 49 EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP------------------- 89
E G+P P + G GE E G +GP G A P GP
Sbjct: 1271 EAGNPG-PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1329
Query: 90 -------------LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
+ KG P PG G + G G+ GA G
Sbjct: 1330 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA-----AGAEG 1384
Query: 137 SGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
+ AKGE GA+ P G G V GP+ P G+ P +RG
Sbjct: 1385 RQGEKGAKGEAGAEGPPGKTGPV-------GPQGPAGKPGPEGLRG 1423
Score = 35.4 bits (80), Expect = 0.030
Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGRAFR 110
PK G G E G G GK P + GP PR +G + P G
Sbjct: 863 PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG 922
Query: 111 VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPET 169
G +R G +G +G G G+ G G G+ GF G TGP
Sbjct: 923 PPGPPGERGPQGPQGP-----VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 976
Query: 170 PLGRHTPSCMRGQTSRWG 187
P G P G+T G
Sbjct: 977 PGGVVGPQGPTGETGPIG 994
Score = 30.0 bits (66), Expect = 1.3
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 57 KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTAC 116
K + A G G+ +G GP GK P G P G P A G G
Sbjct: 1392 KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP-VGEQGLPGAAGQDGPPGPMGPPG 1450
Query: 117 QRPRAGTEGSRCG----WCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPL 171
G GS+ +G G + KG+RG +G+ G G GG GP PL
Sbjct: 1451 LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI-PGPAGPL 1509
Query: 172 GRHTPSCMRG 181
G P + G
Sbjct: 1510 GPPGPPGLPG 1519
Score = 29.6 bits (65), Expect = 1.7
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
P+G P G GG V K + G G E G GP G+ E+GP GA
Sbjct: 1250 PQG--PPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP----PGA 1301
Query: 97 SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAA 155
+ P A G +G G G G G G++G D G
Sbjct: 1302 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP-----GEPGPAGQDGVGGDKGEDGDPGQP 1356
Query: 156 GDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGRLAA 191
G G G GP P G+ P G R G A
Sbjct: 1357 GPPGPSGE-AGPPGPPGKRGPPGAAGAEGRQGEKGA 1391
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 40.8 bits (94), Expect = 7e-04
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGG-- 74
GP G R V AD + RG K S E G P K + +G GE ++G
Sbjct: 712 GPQGPIGYPGPRGVKGADGV-RGLKGSKGEKGEDGFPGF-KGDMGLKGDRGEVGQIGPRG 769
Query: 75 ----SGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRC 128
GP G+A P + GP KG P PG +G+ G G +
Sbjct: 770 EDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEK- 828
Query: 129 GWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--------AGTGPETPLGRHTPSCM 179
GARG +G+RG PRG+ G G G G GP P G P
Sbjct: 829 ----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 884
Query: 180 RG 181
+G
Sbjct: 885 QG 886
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGR 107
P P+ ARG G+ G SG G P E GP P+ G P PG
Sbjct: 845 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKD- 903
Query: 108 AFRVQGTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
+ G QR G +G G +G +G GERG P G G+ G G
Sbjct: 904 --GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPG 961
Query: 163 AG--------TGPETPLGRHTPSCMRG 181
A GP+ G+ P+ +RG
Sbjct: 962 AAGKEGAKGDPGPQGISGKDGPAGLRG 988
Score = 37.4 bits (85), Expect = 0.008
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 64 GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
G GE ++G GP G P GP GA PG + G + AG
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGP----NGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1223
Query: 124 EGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTP 176
G G G G + +GE+G A P GAAG G G G + P G P
Sbjct: 1224 PGPP-----GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PGDDGPKGNPGP 1271
Score = 37.0 bits (84), Expect = 0.010
Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 42/179 (23%)
Query: 12 GKVTEGP-VTQQHVKGCRLVAQADLLPRGAK-PSNLWGKEGGHPVVPKAQVKARGGWGEG 69
G ++GP ++ Q + ++ QA + RG P L G+ G
Sbjct: 462 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG------------------- 502
Query: 70 LELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCG 129
+GG G +G + + GP PR P P G +R R G +
Sbjct: 503 -PVGGPGSSGAKGESGDPGPQGPR--GVQGPPGP--------TGKPGKRGRPGAD----- 546
Query: 130 WCLGARGSGEAREAKGERGADP-RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G RG AKG+RG D G GD G G GP+ P G MRG+ G
Sbjct: 547 ---GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE-RGPQGPPGPPGDDGMRGEDGEIG 601
Score = 37.0 bits (84), Expect = 0.010
Identities = 51/191 (26%), Positives = 69/191 (36%), Gaps = 41/191 (21%)
Query: 36 LPRGAKPSNLWGKEG-----GHPVV--------PKAQVKARGGWGEGLELGGSGPTGKAR 82
LP A P L G G G P + PK + +G G + G GP G
Sbjct: 605 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 664
Query: 83 PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS--------RCGW---- 130
P GP KG P G+ A G + ++G +G+ G+
Sbjct: 665 PQGPIGP-PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 723
Query: 131 -CLGARGSGEAREAKGERGAD-------------PRGAAGDVGFGGAGTGPETPLGRHTP 176
GA G + +KGE+G D RG G +G G GPE P GR P
Sbjct: 724 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE-DGPEGPKGRAGP 782
Query: 177 SCMRGQTSRWG 187
+ G + + G
Sbjct: 783 TGDPGPSGQAG 793
Score = 36.2 bits (82), Expect = 0.018
Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 37 PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRK 94
P+G P GK+G GHP Q G G+ G G G P E+GP+
Sbjct: 893 PKG--PPGPPGKDGLPGHP----GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI---- 942
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGA 154
G P PG + G A + G G + G G R GERG GA
Sbjct: 943 GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ--GISGKDGPAGLRGFPGERGLP--GA 998
Query: 155 AGDVGFGGAGTGPETPLG 172
G G G G GP+ P G
Sbjct: 999 QGAPGLKG-GEGPQGPPG 1015
Score = 36.2 bits (82), Expect = 0.018
Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 46/166 (27%)
Query: 49 EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP------------------- 89
E G+P P + G GE E G +GP G A P GP
Sbjct: 1220 EAGNPG-PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1278
Query: 90 -------------LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
+ KG P PG G + G G+ GA G
Sbjct: 1279 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA-----AGAEG 1333
Query: 137 SGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
+ AKGE GA+ P G G V GP+ P G+ P +RG
Sbjct: 1334 RQGEKGAKGEAGAEGPPGKTGPV-------GPQGPAGKPGPEGLRG 1372
Score = 35.4 bits (80), Expect = 0.030
Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGRAFR 110
PK G G E G G GK P + GP PR +G + P G
Sbjct: 812 PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG 871
Query: 111 VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPET 169
G +R G +G +G G G+ G G G+ GF G TGP
Sbjct: 872 PPGPPGERGPQGPQGP-----VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 925
Query: 170 PLGRHTPSCMRGQTSRWG 187
P G P G+T G
Sbjct: 926 PGGVVGPQGPTGETGPIG 943
Score = 30.0 bits (66), Expect = 1.3
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 57 KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTAC 116
K + A G G+ +G GP GK P G P G P A G G
Sbjct: 1341 KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP-VGEQGLPGAAGQDGPPGPMGPPG 1399
Query: 117 QRPRAGTEGSRCG----WCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPL 171
G GS+ +G G + KG+RG +G+ G G GG GP PL
Sbjct: 1400 LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI-PGPAGPL 1458
Query: 172 GRHTPSCMRG 181
G P + G
Sbjct: 1459 GPPGPPGLPG 1468
Score = 29.6 bits (65), Expect = 1.7
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
P+G P G GG V K + G G E G GP G+ E+GP GA
Sbjct: 1199 PQG--PPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP----PGA 1250
Query: 97 SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAA 155
+ P A G +G G G G G G++G D G
Sbjct: 1251 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP-----GEPGPAGQDGVGGDKGEDGDPGQP 1305
Query: 156 GDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGRLAA 191
G G G GP P G+ P G R G A
Sbjct: 1306 GPPGPSGE-AGPPGPPGKRGPPGAAGAEGRQGEKGA 1340
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 40.8 bits (94), Expect = 7e-04
Identities = 54/182 (29%), Positives = 68/182 (37%), Gaps = 24/182 (13%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGG-- 74
GP G R V AD + RG K S E G P K + +G GE ++G
Sbjct: 751 GPQGPIGYPGPRGVKGADGV-RGLKGSKGEKGEDGFPGF-KGDMGLKGDRGEVGQIGPRG 808
Query: 75 ----SGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRC 128
GP G+A P + GP KG P PG +G+ G G +
Sbjct: 809 EDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEK- 867
Query: 129 GWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG--------AGTGPETPLGRHTPSCM 179
GARG +G+RG PRG+ G G G G GP P G P
Sbjct: 868 ----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGP 923
Query: 180 RG 181
+G
Sbjct: 924 QG 925
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGR 107
P P+ ARG G+ G SG G P E GP P+ G P PG
Sbjct: 884 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKD- 942
Query: 108 AFRVQGTACQRPRAGTEGSR----CGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGG 162
+ G QR G +G G +G +G GERG P G G+ G G
Sbjct: 943 --GLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPG 1000
Query: 163 AG--------TGPETPLGRHTPSCMRG 181
A GP+ G+ P+ +RG
Sbjct: 1001 AAGKEGAKGDPGPQGISGKDGPAGLRG 1027
Score = 37.4 bits (85), Expect = 0.008
Identities = 36/114 (31%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 64 GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
G GE ++G GP G P GP GA PG + G + AG
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGP----NGADGPQGPPGSVGSVGGVGEKGEPGEAGN 1262
Query: 124 EGSRCGWCLGARGSGEAREAKGERG-ADPRGAAGDVGFGGAGTGPETPLGRHTP 176
G G G G + +GE+G A P GAAG G G G + P G P
Sbjct: 1263 PGPP-----GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGP-PGDDGPKGNPGP 1310
Score = 37.0 bits (84), Expect = 0.010
Identities = 48/179 (26%), Positives = 66/179 (36%), Gaps = 42/179 (23%)
Query: 12 GKVTEGP-VTQQHVKGCRLVAQADLLPRGAK-PSNLWGKEGGHPVVPKAQVKARGGWGEG 69
G ++GP ++ Q + ++ QA + RG P L G+ G
Sbjct: 501 GDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPG------------------- 541
Query: 70 LELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCG 129
+GG G +G + + GP PR P P G +R R G +
Sbjct: 542 -PVGGPGSSGAKGESGDPGPQGPR--GVQGPPGP--------TGKPGKRGRPGAD----- 585
Query: 130 WCLGARGSGEAREAKGERGADP-RGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G RG AKG+RG D G GD G G GP+ P G MRG+ G
Sbjct: 586 ---GGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE-RGPQGPPGPPGDDGMRGEDGEIG 640
Score = 37.0 bits (84), Expect = 0.010
Identities = 51/191 (26%), Positives = 69/191 (36%), Gaps = 41/191 (21%)
Query: 36 LPRGAKPSNLWGKEG-----GHPVV--------PKAQVKARGGWGEGLELGGSGPTGKAR 82
LP A P L G G G P + PK + +G G + G GP G
Sbjct: 644 LPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPG 703
Query: 83 PASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGS--------RCGW---- 130
P GP KG P G+ A G + ++G +G+ G+
Sbjct: 704 PQGPIGP-PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPR 762
Query: 131 -CLGARGSGEAREAKGERGAD-------------PRGAAGDVGFGGAGTGPETPLGRHTP 176
GA G + +KGE+G D RG G +G G GPE P GR P
Sbjct: 763 GVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGE-DGPEGPKGRAGP 821
Query: 177 SCMRGQTSRWG 187
+ G + + G
Sbjct: 822 TGDPGPSGQAG 832
Score = 36.2 bits (82), Expect = 0.018
Identities = 44/138 (31%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 37 PRGAKPSNLWGKEG--GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRK 94
P+G P GK+G GHP Q G G+ G G G P E+GP+
Sbjct: 932 PKG--PPGPPGKDGLPGHP----GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPI---- 981
Query: 95 GASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGA 154
G P PG + G A + G G + G G R GERG GA
Sbjct: 982 GERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ--GISGKDGPAGLRGFPGERGLP--GA 1037
Query: 155 AGDVGFGGAGTGPETPLG 172
G G G G GP+ P G
Sbjct: 1038 QGAPGLKG-GEGPQGPPG 1054
Score = 36.2 bits (82), Expect = 0.018
Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 46/166 (27%)
Query: 49 EGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGP------------------- 89
E G+P P + G GE E G +GP G A P GP
Sbjct: 1259 EAGNPG-PPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1317
Query: 90 -------------LTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
+ KG P PG G + G G+ GA G
Sbjct: 1318 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA-----AGAEG 1372
Query: 137 SGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
+ AKGE GA+ P G G V GP+ P G+ P +RG
Sbjct: 1373 RQGEKGAKGEAGAEGPPGKTGPV-------GPQGPAGKPGPEGLRG 1411
Score = 35.4 bits (80), Expect = 0.030
Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR-----KGASHTPEAPGVGRAFR 110
PK G G E G G GK P + GP PR +G + P G
Sbjct: 851 PKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDG 910
Query: 111 VQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPR-GAAGDVGFGGAGTGPET 169
G +R G +G +G G G+ G G G+ GF G TGP
Sbjct: 911 PPGPPGERGPQGPQGP-----VGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK-TGPPG 964
Query: 170 PLGRHTPSCMRGQTSRWG 187
P G P G+T G
Sbjct: 965 PGGVVGPQGPTGETGPIG 982
Score = 30.0 bits (66), Expect = 1.3
Identities = 38/130 (29%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 57 KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTAC 116
K + A G G+ +G GP GK P G P G P A G G
Sbjct: 1380 KGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGP-VGEQGLPGAAGQDGPPGPMGPPG 1438
Query: 117 QRPRAGTEGSRCG----WCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPL 171
G GS+ +G G + KG+RG +G+ G G GG GP PL
Sbjct: 1439 LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGI-PGPAGPL 1497
Query: 172 GRHTPSCMRG 181
G P + G
Sbjct: 1498 GPPGPPGLPG 1507
Score = 29.6 bits (65), Expect = 1.7
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 15/156 (9%)
Query: 37 PRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGA 96
P+G P G GG V K + G G E G GP G+ E+GP GA
Sbjct: 1238 PQG--PPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP----PGA 1289
Query: 97 SHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAA 155
+ P A G +G G G G G G++G D G
Sbjct: 1290 AGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP-----GEPGPAGQDGVGGDKGEDGDPGQP 1344
Query: 156 GDVGFGGAGTGPETPLGRHTPSCMRGQTSRWGRLAA 191
G G G GP P G+ P G R G A
Sbjct: 1345 GPPGPSGE-AGPPGPPGKRGPPGAAGAEGRQGEKGA 1379
>gi|5803080 macrophage receptor with collagenous structure [Homo
sapiens]
Length = 520
Score = 40.8 bits (94), Expect = 7e-04
Identities = 39/119 (32%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 53 PVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTP-----RKGASHTPEAPGVGR 107
P P A+ A+G G G SGP G E+G P ++GA+ TP G
Sbjct: 170 PPGPPAEKGAKGAMGRDGATGPSGPQGPPGVKGEAGLQGPQGAPGKQGATGTPGPQGEKG 229
Query: 108 AFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DPRGAAGDVG-FGGAG 164
+ G + GT+G + LG GS R KG+ G P GA G G FG G
Sbjct: 230 SKGDGGLIGPKGETGTKGEKGD--LGLPGSKGDRGMKGDAGVMGPPGAQGSKGDFGRPG 286
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 73 GGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCL 132
G GPTG P E G P P PG+ A ++G G G C
Sbjct: 1352 GRKGPTGLPGPRGEPG---PPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSGPGCK 1408
Query: 133 GARGSGEAREAKGERGA-DPRGAAGDVGFGG--AGTGPETPLGRHTP 176
G G R G G+ P G GD G G G GP P+G P
Sbjct: 1409 GEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPGPIGDPGP 1455
Score = 30.8 bits (68), Expect = 0.74
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 30/140 (21%)
Query: 49 EGGHPVVP-----KAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAP 103
E GHP VP + +G G+ + + P G+ P GP P KG AP
Sbjct: 640 ERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYP-GRHGPPGFDGPPGP-KGFPGPQGAP 697
Query: 104 GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGG- 162
G+ G+ + R GT G+ E G G RG GD GFGG
Sbjct: 698 GLS------GSDGHKGRPGTPGTA--------------EIPGPPGF--RGDMGDPGFGGE 735
Query: 163 AGTGPETPLGRHTPSCMRGQ 182
G+ P P G + GQ
Sbjct: 736 KGSSPVGPPGPPGSPGVNGQ 755
Score = 27.3 bits (59), Expect = 8.2
Identities = 40/136 (29%), Positives = 42/136 (30%), Gaps = 28/136 (20%)
Query: 47 GKEGGHPVVPKAQVKARGGWGEGLELGGSG-----PTGKARPASESGPLTPRKGASHTPE 101
G G H V P V G GE + G G P GK P G P A T
Sbjct: 1190 GASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGR 1249
Query: 102 APGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADP-----RGAAG 156
AP P G G + G G R A G G RG G
Sbjct: 1250 APK------------DIPDPGPPGDQ-----GPPGPDGPRGAPGPPGLPGSVDLLRGEPG 1292
Query: 157 DVGFGGAGTGPETPLG 172
D G G GP P G
Sbjct: 1293 DCGLPGP-PGPPGPPG 1307
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 40.0 bits (92), Expect = 0.001
Identities = 45/152 (29%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 36 LPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKAR---PASESGPLTP 92
LP A + + G+ G PV PK + G G + G SGP G PA GPL
Sbjct: 68 LPGAAGQAGMPGQAG--PVGPKGDNGSVGEPGPKGDTGPSGPPGPPGVPGPAGREGPL-G 124
Query: 93 RKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGA-DP 151
++G PG +G A + G G + G+ G+ KGERG
Sbjct: 125 KQGNIGPQGKPG------PKGEAGPKGEVGAPGMQ-----GSAGARGLAGPKGERGVPGE 173
Query: 152 RGAAGDVGFGGA--GTGPETPLGRHTPSCMRG 181
RG G+ G G+ GP+ G P ++G
Sbjct: 174 RGVPGNTGAAGSAGAMGPQGSPGARGPPGLKG 205
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 13/117 (11%)
Query: 73 GGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEG------- 125
G GP GK P E+GP KG P G A + G +R G G
Sbjct: 127 GNIGPQGKPGPKGEAGP----KGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGA 182
Query: 126 SRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQ 182
+ +G +GS AR G +G +G GD G G P+ R ++GQ
Sbjct: 183 AGSAGAMGPQGSPGARGPPGLKG--DKGIPGDKGAKGESGLPDVASLRQQVEALQGQ 237
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 63 RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAG 122
R GWG +LGG G GK P P R PG ++ G RAG
Sbjct: 398 REGWGARAKLGGRGVCGKCGPGPWDDPARRRN--------PGAAARAKLAG-----QRAG 444
Query: 123 TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGP 167
+R G +G+RG G A RG +GG P
Sbjct: 445 RARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP 489
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 63 RGGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAG 122
R GWG +LGG G GK P P R PG ++ G RAG
Sbjct: 398 REGWGARAKLGGRGVCGKCGPGPWDDPARRRN--------PGAAARAKLAG-----QRAG 444
Query: 123 TEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGP 167
+R G +G+RG G A RG +GG P
Sbjct: 445 RARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAP 489
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 40.0 bits (92), Expect = 0.001
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 26/137 (18%)
Query: 73 GGSGPTGKARPASESGPLTP--------RKGASHTPEAPGVGRAFRVQGTACQRPRAGTE 124
G GP G+ P + GP+ P + G P PG+ V+G R G
Sbjct: 934 GLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLD---GVKGEPGDPGRPGPV 990
Query: 125 GSR--CGWCLGARGSGEAREAKGERG-------ADPRGAAGDVGF-GGAGT----GPETP 170
G + G+ +G G KG+RG P+G+ G G GG GT GP+ P
Sbjct: 991 GEQGFMGF-IGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGP 1049
Query: 171 LGRHTPSCMRGQTSRWG 187
G P MRG R G
Sbjct: 1050 PGSRGPPGMRGAKGRRG 1066
Score = 33.1 bits (74), Expect = 0.15
Identities = 47/174 (27%), Positives = 64/174 (36%), Gaps = 21/174 (12%)
Query: 13 KVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGW-GEGLE 71
K EGP +Q G L P + G++G + + R G G+ E
Sbjct: 1399 KGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGE 1458
Query: 72 LGGSGPTGKARPASESGPLTPRKGASHTPEA---PGVGRAFRVQGTACQRPRAGTEGSRC 128
G G G PA + G G + P A PG + G + GTEG R
Sbjct: 1459 QGDDGDPGPMGPAGKRG----NPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEG-RT 1513
Query: 129 GWCLGARGSGEAREAKGERGA----------DPRGAAGDVGFGGAGTGPETPLG 172
G G +G ++ G+ G P+G GD+GF G GP P G
Sbjct: 1514 G-LPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGI-QGPRGPPG 1565
Score = 32.7 bits (73), Expect = 0.20
Identities = 40/134 (29%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 71 ELGGSGPTGKARPASESGPLTPRKGASHTPEAPG----------VGRAFRVQGTACQRPR 120
E G GP G P E GP P GA P PG +G QG QR
Sbjct: 1130 EPGPQGPQGPIGPPGEMGPKGP-PGAVGEPGLPGEAGMKGDLGPLGTPGE-QGLIGQRGE 1187
Query: 121 AGTEGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGG--AGTGPETPLGRHTPS 177
G EG G G + +G+ G D G G G G GP G P
Sbjct: 1188 PGLEGDS-----GPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPE 1242
Query: 178 CMRGQTSRWGRLAA 191
G+ GR A
Sbjct: 1243 GKSGKQGEKGRTGA 1256
Score = 32.7 bits (73), Expect = 0.20
Identities = 45/178 (25%), Positives = 58/178 (32%), Gaps = 18/178 (10%)
Query: 17 GPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSG 76
GP+ +KG R D L G++G P P RG G+ + G G
Sbjct: 1195 GPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDG--PPGPPGVTGVRGPEGKSGKQGEKG 1252
Query: 77 PTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARG 136
TG G L G P PG +G+ G G +GA+G
Sbjct: 1253 RTGAKGAKGYQGQL----GEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGR-----MGAQG 1303
Query: 137 SGEAREAKGERGA-------DPRGAAGDVGFGGAGTGPETPLGRHTPSCMRGQTSRWG 187
G +G P+G G+ G G GP P G P RG G
Sbjct: 1304 EPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPG 1361
Score = 32.3 bits (72), Expect = 0.25
Identities = 40/136 (29%), Positives = 50/136 (36%), Gaps = 13/136 (9%)
Query: 56 PKAQVKARGGWGEGLELGGSGPTGKARPASESGP--LTPRKGASHTPEAPGVGRAFRVQG 113
P+ +RG G G GP G PA E G L G P PG QG
Sbjct: 1046 PQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPG------QQG 1099
Query: 114 TACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGAGTGPETPLGR 173
A +R G+ G G G + GE G P+G G +G G GP+ P G
Sbjct: 1100 VAGERGHLGSRG--FPGIPGPSGPPGTKGLPGEPG--PQGPQGPIGPPGE-MGPKGPPGA 1154
Query: 174 HTPSCMRGQTSRWGRL 189
+ G+ G L
Sbjct: 1155 VGEPGLPGEAGMKGDL 1170
Score = 28.9 bits (63), Expect = 2.8
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 37 PRGAKPSNLWGKEG-----------GHPVVPKAQVKARGGWGEGLELGGSGPTGKARPAS 85
PRG P L GKEG G P PK +RG WG G GP G+ P
Sbjct: 1560 PRG--PPGLMGKEGIVGPLGILGPSGLPG-PKGDKGSRGDWGLQGPRGPPGPRGRPGPPG 1616
Query: 86 ESG 88
G
Sbjct: 1617 PPG 1619
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 39.7 bits (91), Expect = 0.002
Identities = 38/119 (31%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 64 GGWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRAGT 123
G GE G SGP+G E GP KG + PG A +G +R GT
Sbjct: 377 GADGEAGRPGSSGPSGDEGQPGEPGP-PGEKGEAGDEGNPGPDGAPGERGGPGERGPRGT 435
Query: 124 EGSRCGWCLGARGSGEAREAKGERGAD-PRGAAGDVGFGGAGTGPETPLGRHTPSCMRG 181
G+R G RG +G++G + P G GD G G GP+ G P G
Sbjct: 436 PGTR-----GPRGDPGEAGPQGDQGREGPVGVPGDPGEAGP-IGPKGYRGDEGPPGSEG 488
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 39.7 bits (91), Expect = 0.002
Identities = 48/157 (30%), Positives = 60/157 (38%), Gaps = 29/157 (18%)
Query: 10 SEGKVTEGPVTQQHVKGCRLVAQADLLPRGAKPSNLWGKE--GGHPVVPKAQVKARGGWG 67
S G GP Q V+ + A P A+P+ E GGHP P A +A W
Sbjct: 271 SPGGADGGPRRQNSVR--QRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRA---WA 325
Query: 68 EGLELGGSGPTGKARPASESGPLTPRKG----ASHTPEAPGV-----GRAFR-------- 110
E + P A PA+ S P +P +G A + P A GRA R
Sbjct: 326 SSWE-SEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTR 384
Query: 111 ----VQGTACQRPRAGTEGSRCGWCLGARGSGEAREA 143
Q +RPRA R G RGS AR+A
Sbjct: 385 GRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKA 421
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,712,575
Number of Sequences: 37866
Number of extensions: 577641
Number of successful extensions: 3732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 2864
Number of HSP's gapped (non-prelim): 1087
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.