Guide to the Human Genome
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Name: LOC284988 Sequence: fasta or formatted (113aa) NCBI GI: 239753335
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {53aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.9         18           3
 C cysteine            0.0          0           0
 D aspartate           1.8          2           1
 E glutamate           1.8          2           1
 F phenylalanine       0.0          0           0
 G glycine            27.4         31           3
 H histidine           0.0          0           0
 I isoleucine          1.8          2           1
 K lysine              0.0          0           0
 L leucine             3.5          4           1
 M methionine          1.8          2           1
 N asparagine          0.0          0           0
 P proline            12.4         14           2
 Q glutamine           4.4          5           1
 R arginine           16.8         19           2
 S serine              7.1          8           1
 T threonine           1.8          2           1
 V valine              0.0          0           0
 W tryptophan          3.5          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284988             0.355   PREDICTED: hypothetical protein 
PPP1R10               0.134   protein phosphatase 1, regulatory subunit 10 
AVEN                  0.101   cell death regulator aven 
FUS                   0.097   fusion (involved in t(12;16) in malignant liposarcoma...
FAM98B                0.097   family with sequence similarity 98, member B isofor...
LOC100293776          0.097   PREDICTED: hypothetical protein 
LOC100288658          0.097   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.097   PREDICTED: hypothetical protein 
LOC100287688          0.092   PREDICTED: hypothetical protein XP_002342270 
KRT9                  0.092   keratin 9 
LOC100292262          0.092   PREDICTED: hypothetical protein 
GAR1                  0.088   nucleolar protein family A, member 1 
GAR1                  0.088   nucleolar protein family A, member 1 
FAM98A                0.088   hypothetical protein LOC25940 
BAT2                  0.088   HLA-B associated transcript-2 
EWSR1                 0.088   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.088   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.088   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.088   Ewing sarcoma breakpoint region 1 isoform 2 
TWIST1                0.088   twist 
FUSSEL18              0.088   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.088   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.088   PREDICTED: functional smad suppressing element 18 [...
MBD2                  0.088   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.088   methyl-CpG binding domain protein 2 isoform 1 
POU4F1                0.088   POU domain, class 4, transcription factor 1 
XYLT1                 0.083   xylosyltransferase I 
LOC338758             0.083   PREDICTED: hypothetical protein 
LOC338758             0.083   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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