Guide to the Human Genome
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Name: LOC100128943 Sequence: fasta or formatted (191aa) NCBI GI: 169215887
Description:

PREDICTED: similar to hCG2038853

Not currently referenced in the text

Other entries for this name:
alt mRNA {191aa} PREDICTED: similar to hCG2038853
alt mRNA {191aa} PREDICTED: similar to hCG2038853
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         22           2
 C cysteine            2.6          5           1
 D aspartate           1.6          3           1
 E glutamate           6.8         13           1
 F phenylalanine       1.6          3           1
 G glycine            20.4         39           2
 H histidine           2.1          4           1
 I isoleucine          0.5          1           1
 K lysine              4.7          9           1
 L leucine             5.2         10           2
 M methionine          1.0          2           1
 N asparagine          1.6          3           1
 P proline             8.4         16           1
 Q glutamine           3.7          7           2
 R arginine            9.9         19           1
 S serine              5.2         10           1
 T threonine           5.8         11           1
 V valine              5.2         10           2
 W tryptophan          2.1          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2038853 
LOC100128943          1.000   PREDICTED: similar to hCG2038853 
LOC100128943          1.000   PREDICTED: similar to hCG2038853 
COL5A2                0.058   alpha 2 type V collagen preproprotein 
COL1A1                0.055   alpha 1 type I collagen preproprotein 
COL2A1                0.055   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.055   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.053   alpha 1 type V collagen preproprotein 
COL1A2                0.047   alpha 2 type I collagen 
COL3A1                0.045   collagen type III alpha 1 preproprotein 
COL11A2               0.045   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.045   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.045   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL6A3                0.045   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.045   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.045   alpha 3 type VI collagen isoform 4 precursor 
LOC284988             0.045   PREDICTED: hypothetical protein 
LOC100131851          0.042   PREDICTED: hypothetical protein 
LOC100130751          0.042   PREDICTED: hypothetical protein 
COL11A1               0.042   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.042   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.042   alpha 1 type XI collagen isoform A preproprotein [Ho...
MARCO                 0.042   macrophage receptor with collagenous structure 
COL4A4                0.040   alpha 4 type IV collagen precursor 
SFTPD                 0.040   pulmonary surfactant-associated protein D precursor ...
LOC100290946          0.040   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.040   PREDICTED: hypothetical protein XP_002344246 
COL27A1               0.040   collagen, type XXVII, alpha 1 
COL6A1                0.040   collagen, type VI, alpha 1 precursor 
DACT3                 0.040   thymus expressed gene 3-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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