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Search of human proteins with 169175458
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens]
(376 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens] 800 0.0
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 67 3e-11
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens] 66 4e-11
gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo ... 55 1e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 52 1e-06
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 52 1e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 50 3e-06
gi|239755972 PREDICTED: similar to prostate collagen triple heli... 49 7e-06
gi|239750495 PREDICTED: similar to prostate collagen triple heli... 49 7e-06
gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo ... 49 7e-06
gi|209447093 prostate collagen triple helix isoform 2 [Homo sapi... 49 7e-06
gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens] 49 7e-06
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 49 7e-06
gi|169205253 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 4e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 45 8e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 45 8e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 45 8e-05
gi|116284392 mucin 2 precursor [Homo sapiens] 45 1e-04
gi|148536848 carboxyl ester lipase precursor [Homo sapiens] 44 2e-04
gi|167736355 mucin 4 isoform a [Homo sapiens] 43 4e-04
gi|16753207 ubiquilin 2 [Homo sapiens] 43 4e-04
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 42 0.001
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 42 0.001
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 42 0.001
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 42 0.001
gi|188536004 zinc finger protein 469 [Homo sapiens] 41 0.002
gi|239753818 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 41 0.002
gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo ... 41 0.002
>gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens]
Length = 376
Score = 800 bits (2067), Expect = 0.0
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 1 MATSIPENAFGALGIRNLGLQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 60
MATSIPENAFGALGIRNLGLQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD
Sbjct: 1 MATSIPENAFGALGIRNLGLQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 60
Query: 61 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 120
TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP
Sbjct: 61 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 120
Query: 121 LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDA 180
LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDA
Sbjct: 121 LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDA 180
Query: 181 AELTSPHTPDEEAQFAGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPSVPLG 240
AELTSPHTPDEEAQFAGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPSVPLG
Sbjct: 181 AELTSPHTPDEEAQFAGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPSVPLG 240
Query: 241 YVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEE 300
YVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEE
Sbjct: 241 YVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEE 300
Query: 301 PGPGLRLVGASGWRGASEVWLPGRGLYETCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGR 360
PGPGLRLVGASGWRGASEVWLPGRGLYETCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGR
Sbjct: 301 PGPGLRLVGASGWRGASEVWLPGRGLYETCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGR 360
Query: 361 EGEVGSVRTEAGQVGP 376
EGEVGSVRTEAGQVGP
Sbjct: 361 EGEVGSVRTEAGQVGP 376
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 66.6 bits (161), Expect = 3e-11
Identities = 37/135 (27%), Positives = 54/135 (40%)
Query: 22 PFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP 81
PF PL P + P P + L P + P+ P + P+ P + L P + P
Sbjct: 548 PFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESP 607
Query: 82 LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 141
L P + PL P + L P + P+ P + P+ P + L PL L P +
Sbjct: 608 LSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPE 667
Query: 142 TGPLHPLTDTGPLHP 156
PL P + P P
Sbjct: 668 ESPLSPPPEESPTSP 682
Score = 66.2 bits (160), Expect = 4e-11
Identities = 66/257 (25%), Positives = 95/257 (36%), Gaps = 17/257 (6%)
Query: 22 PFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP 81
PF PL P + PL P + L P + P+ P + P+ P + L PL
Sbjct: 602 PFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSR 661
Query: 82 LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 141
L P + PL P + P P + L P + P P + P P + + +
Sbjct: 662 LSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLE 721
Query: 142 TGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGN 201
PL PL + L P + PHL L + L SP EE +
Sbjct: 722 ESPLLPLPEEPQLCP--RSEGPHLSPRPEEPHLSPRPEEPHL-SPQA--EEPHLSPQPEE 776
Query: 202 PVDTAEASVGSLKGQIWGP-AGPEGKWPAGLQVRPSVPLGYVGGPAP----LTPRSDQEG 256
P A L Q GP P+ P L + P ++ P P L+P+ ++
Sbjct: 777 PCLCAVPEEPHLSPQAEGPHLSPQ---PEELHLSPQTEEPHL-SPVPEEPCLSPQPEESH 832
Query: 257 IWPLSEQVTGPCSSGAP 273
+ P SE+ PC S P
Sbjct: 833 LSPQSEE---PCLSPRP 846
Score = 65.9 bits (159), Expect = 6e-11
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 20 LQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDT 79
L P P P +T PL P + PL P + PL P + P P + L P +
Sbjct: 520 LSPPEESPPSPALET-PLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEE 578
Query: 80 GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 139
P+ P + P+ P + L P + PL P + PL P + L P + P+ P
Sbjct: 579 SPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPP 638
Query: 140 TDTGPLHPLTDTGPLHPL 157
+ P+ P + L PL
Sbjct: 639 PEESPMSPPPEVSRLSPL 656
Score = 65.9 bits (159), Expect = 6e-11
Identities = 37/135 (27%), Positives = 54/135 (40%)
Query: 22 PFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP 81
P PL P + PL P + PL P + P P + L P + P+ P + P
Sbjct: 530 PALETPLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESP 589
Query: 82 LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 141
+ P + L P + PL P + PL P + L P + P+ P + P+ P +
Sbjct: 590 MSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPE 649
Query: 142 TGPLHPLTDTGPLHP 156
L PL L P
Sbjct: 650 VSRLSPLPVVSRLSP 664
Score = 64.7 bits (156), Expect = 1e-10
Identities = 36/130 (27%), Positives = 53/130 (40%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
PL P + PL P + P P + L P + P+ P + P+ P + L P
Sbjct: 544 PLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPF 603
Query: 87 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 146
+ PL P + PL P + L P + P+ P + P+ P + L PL L
Sbjct: 604 EESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLS 663
Query: 147 PLTDTGPLHP 156
P + PL P
Sbjct: 664 PPPEESPLSP 673
Score = 62.0 bits (149), Expect = 8e-10
Identities = 34/129 (26%), Positives = 51/129 (39%)
Query: 28 LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 87
L P + P+ P + P+ P + L P + PL P + PL P + L P +
Sbjct: 572 LSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPE 631
Query: 88 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 147
P+ P + P+ P + L PL L P + PL P + P P + L P
Sbjct: 632 DSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSP 691
Query: 148 LTDTGPLHP 156
+ P P
Sbjct: 692 PPEDSPTSP 700
Score = 61.6 bits (148), Expect = 1e-09
Identities = 34/130 (26%), Positives = 51/130 (39%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P P + L P + P+ P + P+ P + L P + PL P + PL P
Sbjct: 562 PTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPP 621
Query: 87 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 146
+ L P + P+ P + P+ P + L PL L P + PL P + P
Sbjct: 622 EASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTS 681
Query: 147 PLTDTGPLHP 156
P + L P
Sbjct: 682 PPPEASRLSP 691
Score = 60.5 bits (145), Expect = 2e-09
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 89
PL + PL P + PL P + P P + L P + P PL + L +
Sbjct: 433 PLNEEMPLLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEES 492
Query: 90 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 149
PL P + PL P ++ P PL ++ PL P + P P +T PL P + PL P
Sbjct: 493 PLSPPPEESPLSPPPESSPFSPLEES-PLSP-PEESPPSPALET-PLSPPPEASPLSPPF 549
Query: 150 DTGPLHP 156
+ PL P
Sbjct: 550 EESPLSP 556
Score = 58.9 bits (141), Expect = 7e-09
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
PL P + PL P + P P + L P + P PL + L + PL P
Sbjct: 439 PLLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPP 498
Query: 87 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 146
+ PL P ++ P PL ++ PL P + P P +T PL P + PL P + PL
Sbjct: 499 EESPLSPPPESSPFSPLEES-PLSP-PEESPPSPALET-PLSPPPEASPLSPPFEESPLS 555
Query: 147 PLTDTGPLHP 156
P + P P
Sbjct: 556 PPPEELPTSP 565
Score = 57.8 bits (138), Expect = 2e-08
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 20 LQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDT 79
L P PL P + P P + L P + P PL + L + PL P +
Sbjct: 441 LPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEE 500
Query: 80 GPLHPLTDTGPLHPLTDT-------GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 132
PL P ++ P PL ++ P P +T PL P + PL P + PL P +
Sbjct: 501 SPLSPPPESSPFSPLEESPLSPPEESPPSPALET-PLSPPPEASPLSPPFEESPLSPPPE 559
Query: 133 TGPLHPLTDTGPLHPLTDTGPLHP 156
P P + L P + P+ P
Sbjct: 560 ELPTSPPPEASRLSPPPEESPMSP 583
Score = 43.9 bits (102), Expect = 2e-04
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 75 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 134
PL + PL P + PL P + P P + L P + P PL + L +
Sbjct: 433 PLNEEMPLLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEES 492
Query: 135 PLHPLTDTGPLHPLTDTGPLHPL 157
PL P + PL P ++ P PL
Sbjct: 493 PLSPPPEESPLSPPPESSPFSPL 515
>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 298
Score = 66.2 bits (160), Expect = 4e-11
Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 27/132 (20%)
Query: 25 HRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
H +HP + P+HP T P+HP T P+HP T P+HP T+ P+HP T+ P+HP
Sbjct: 49 HPTIHPSSTHPPIHPSTHL-PIHPSTHL-PIHPSTHP-PIHPSTNP-PIHPSTNP-PIHP 103
Query: 85 LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP 144
T +HP T HP + P+HP HPL +HP +HPLT
Sbjct: 104 STHP-TIHPST-----HPPSTYLPIHP-----SAHPL-----IHPF-----IHPLTHLF- 141
Query: 145 LHPLTDTGPLHP 156
+HP P+HP
Sbjct: 142 IHPPPTHSPIHP 153
Score = 59.3 bits (142), Expect = 5e-09
Identities = 54/152 (35%), Positives = 71/152 (46%), Gaps = 26/152 (17%)
Query: 17 NLGLQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 76
+L + P H P+HP T+ P+HP T+ P+HP T +HP T HP + P+HP
Sbjct: 74 HLPIHPSTHPPIHPSTNP-PIHPSTNP-PIHPSTHP-TIHPST-----HPPSTYLPIHP- 124
Query: 77 TDTGPL-----HPLTDTGPLHPLTDTGPLHPLTDTG---PLHPLTDTGPLHPLTDTGPLH 128
PL HPLT +HP P+HP T + P H L+ P +P P
Sbjct: 125 -SAHPLIHPFIHPLTHLF-IHPPPTHSPIHPPTHSSIHLPTH-LSIYPPTYPSIHPPPTP 181
Query: 129 PLTDTGPLHPLTDTGPL-HPLTDTG---PLHP 156
+ P+HP T PL HP T T P HP
Sbjct: 182 HPSIHPPIHP--STHPLIHPSTHTSTHPPTHP 211
Score = 45.4 bits (106), Expect = 8e-05
Identities = 48/149 (32%), Positives = 61/149 (40%), Gaps = 34/149 (22%)
Query: 20 LQPFWHRPLHPLTDTGPLHPLTDTG---PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 76
+ P H +HP P+HP T + P H L+ P +P P + P+HP
Sbjct: 134 IHPLTHLFIHPPPTHSPIHPPTHSSIHLPTH-LSIYPPTYPSIHPPPTPHPSIHPPIHP- 191
Query: 77 TDTGPL-HPLTDTG---PLHPLTDTGPLHPLTDT---GPLHPLTDTGPLHPLTDTGPLHP 129
T PL HP T T P HP P HP ++ +HP P+HP P HP
Sbjct: 192 -STHPLIHPSTHTSTHPPTHP-----PTHPPSNPSIHSSIHP-----PIHP-----PTHP 235
Query: 130 LTDTGPLHPLTDTGPLHPLTDTGPLHPLL 158
T P+H T HP T PLL
Sbjct: 236 STHP-PIHSST-----HPSTYFSTHPPLL 258
>gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo
sapiens]
Length = 828
Score = 55.1 bits (131), Expect = 1e-07
Identities = 54/150 (36%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 25 HRPLHPLTDTGPLHPLTDTGPLHPLTDTG---PLHPLTDT-GPLHPLTDTGPLHPLTDTG 80
H PLHP T + +HP P HP P HP T P+HP T P+HP T
Sbjct: 22 HPPLHPPTHSPSIHPSIHP-PTHPSIHPSIHPPTHPSIHTHPPIHPHTHP-PIHPPTHPS 79
Query: 81 PLHPLTDTG---PLHPLTDTGPLHPLTDT---GPLHPL--TDTGPL-----HPLTDTGPL 127
+HPL LHP T + +HP T +HP T PL HP T + +
Sbjct: 80 -IHPLIHPSIHPSLHPPTHSS-IHPSTHPPTHSSIHPSIHPSTHPLIHPSIHPSTHSS-I 136
Query: 128 HPLTDTGP-LHPLTDTGPLHPLTDTGPLHP 156
HP T + P HPL +HP T + P+HP
Sbjct: 137 HPPTHSHPSTHPLIHPS-IHPPTHS-PIHP 164
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 51.6 bits (122), Expect = 1e-06
Identities = 64/225 (28%), Positives = 75/225 (33%), Gaps = 24/225 (10%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 89
P GP P + GP GP GP P + GP P TG P G
Sbjct: 908 PRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPG 967
Query: 90 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 149
P P D P HP G TGP P GP P +TGP+ GP P
Sbjct: 968 P--PGKDGLPGHP-GQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPG 1024
Query: 150 DTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEAS 209
+ G LP A + A L P F G G P
Sbjct: 1025 EQG------------LPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALG 1072
Query: 210 VGSLKGQIWGPAGPEG----KWPAGLQVRPSVPLGYVGGPAPLTP 250
+ +G GP GP G + PAG + P+G G P P P
Sbjct: 1073 LKGNEGPP-GPPGPAGSPGERGPAG----AAGPIGIPGRPGPQGP 1112
Score = 45.1 bits (105), Expect = 1e-04
Identities = 85/346 (24%), Positives = 110/346 (31%), Gaps = 69/346 (19%)
Query: 35 GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 94
GP+ GP+ P + G + + G D G P TGP P+ GP
Sbjct: 1138 GPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGAD 1197
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
+ G P G D GP GP+ GP +TG + + GP
Sbjct: 1198 GEPG---PRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP- 1253
Query: 155 HPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASVGSLK 214
P P+ A P P G G + EA L
Sbjct: 1254 ------PGPRGPSGAPGAD-----------GPQGPPGGIGNPGAVGEKGEPGEAGEPGLP 1296
Query: 215 GQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPV 274
G+ GP GP+G+ + S P G G P P P D GP S PV
Sbjct: 1297 GE-GGPPGPKGERG---EKGESGPSGAAGPPGPKGPPGDD-----------GPKGSPGPV 1341
Query: 275 LVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRG----ASEVWLPGRGLYETC 330
G G EPGP + G G +G + PG
Sbjct: 1342 GFPGDPG---------------PPGEPGPAGQ-DGPPGDKGDDGEPGQTGSPG------- 1378
Query: 331 WVPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVRTEAGQVGP 376
+ E G G + PG GR+GE G+ + EAG GP
Sbjct: 1379 -----PTGEPGPSGPPGKRGPPGPAGPEGRQGEKGA-KGEAGLEGP 1418
Score = 32.7 bits (73), Expect = 0.55
Identities = 65/256 (25%), Positives = 80/256 (31%), Gaps = 38/256 (14%)
Query: 33 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 92
++GP GP P D GP GP+ D GP G P D G
Sbjct: 1313 ESGPSGAAGPPGPKGPPGDDGPKG---SPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDG 1369
Query: 93 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 152
TG P + GP P GP GP P G + G P TG
Sbjct: 1370 EPGQTGSPGPTGEPGPSGPPGKRGP------PGPAGPEGRQGEKGAKGEAGLEGPPGKTG 1423
Query: 153 PLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASVGS 212
P+ P P P + + L PD G P +
Sbjct: 1424 PIGPQ---GAPGKPGPDGLRGIPGPVGEQGLPGSPGPD---------GPPGPMGPPGLPG 1471
Query: 213 LKGQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSD------QEGIWPLSEQ-VT 265
LKG GP G +G GL +G +G P + D Q P EQ +T
Sbjct: 1472 LKGDS-GPKGEKGH--PGL-------IGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGIT 1521
Query: 266 GPCSSGAPVLVAGVAG 281
GP P G+ G
Sbjct: 1522 GPSGPIGPPGPPGLPG 1537
Score = 32.7 bits (73), Expect = 0.55
Identities = 65/241 (26%), Positives = 78/241 (32%), Gaps = 30/241 (12%)
Query: 35 GPLHPLTDTGPLH---PLTDTGPLHPLTDTGPLH---PLTDTGPLHPLTDTGPLHPLTDT 88
GP P D GP P+ G P + GP P D G TG P +
Sbjct: 1324 GPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP 1383
Query: 89 GPLHPLTDTGPLHPL------------TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 136
GP P GP P + G P TGP+ P G P G
Sbjct: 1384 GPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIP 1443
Query: 137 HPLTDTG-PLHPLTD--TGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEA 193
P+ + G P P D GP+ P P LP L P E
Sbjct: 1444 GPVGEQGLPGSPGPDGPPGPMGP------PGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQ 1497
Query: 194 QFAGGAGNPVDTAEASVGSLKGQIWGPAGPEG-KWPAGLQVRPSVPLGYVGGPAPLTPRS 252
G G P + +G I GP+GP G P GL P P G G P P+
Sbjct: 1498 GEKGDRGLPGPQGSSGPKGEQG-ITGPSGPIGPPGPPGLPGPPG-PKGAKGSSGPTGPKG 1555
Query: 253 D 253
+
Sbjct: 1556 E 1556
Score = 31.6 bits (70), Expect = 1.2
Identities = 67/249 (26%), Positives = 78/249 (31%), Gaps = 29/249 (11%)
Query: 33 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 92
D GP G P D G TG P + GP P GP GP
Sbjct: 1346 DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGP------PGPAG 1399
Query: 93 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG-PLHPLTD- 150
P G + G P TGP+ P G P G P+ + G P P D
Sbjct: 1400 PEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDG 1459
Query: 151 -TGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEAS 209
GP+ P P LP L P E G G P +
Sbjct: 1460 PPGPMGP------PGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSG 1513
Query: 210 VGSLKGQIWGPAGPEGK-WPAGL-----------QVRPSVPLGYVGGPAPLTPRSDQ-EG 256
+G I GP+GP G P GL P+ P G G P P P E
Sbjct: 1514 PKGEQG-ITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEV 1572
Query: 257 IWPLSEQVT 265
I PL Q +
Sbjct: 1573 IQPLPIQAS 1581
Score = 31.2 bits (69), Expect = 1.6
Identities = 56/226 (24%), Positives = 80/226 (35%), Gaps = 33/226 (14%)
Query: 11 GALGIRNLGLQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDT 70
G +G + L P P P+ G D+GP G + + G D
Sbjct: 1444 GPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDR 1503
Query: 71 GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 130
G P +GP TGP P+ GP GP +GP P + G HP
Sbjct: 1504 GLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAG--HP- 1560
Query: 131 TDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPD 190
GP P G + + P LP A+R R +DA++L +
Sbjct: 1561 ---GPPGPPGPPGEV--------IQP--------LPIQASR--TRRNIDASQLLDDGNGE 1599
Query: 191 EEAQFAGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPS 236
+A G ++ S+ SLK +I + K P G Q P+
Sbjct: 1600 NYVDYADG----MEEIFGSLNSLKLEI-----EQMKRPLGTQQNPA 1636
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 51.6 bits (122), Expect = 1e-06
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP-LHPLTDTGPLHPL 85
P+ P+ P+ P+ P+ P+ P+ P + P+ P GP + P+ P+ P+
Sbjct: 248 PVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPP----GPRMAPVPPWPPMAPV 303
Query: 86 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 145
P+ P+ P+ P+ P+ + P+ + P+ PL P+ PL P+
Sbjct: 304 PPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPGPPM 363
Query: 146 HPLTDTGPLHPL 157
PL P+ PL
Sbjct: 364 APLPPGPPMAPL 375
Score = 46.6 bits (109), Expect = 4e-05
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGP-LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 85
P+ P+ P+ P + P+ P GP + P+ P+ P+ P+ P+ P+ P+
Sbjct: 266 PIAPMPPMAPVPPGSRMAPVPP----GPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPV 321
Query: 86 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 145
P+ + P+ + P+ PL P+ PL P+ PL P+ PL +
Sbjct: 322 PPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPGPPMAPLPPGPPMAPLPPRSHV 381
Query: 146 HPLTDTGPLH 155
P T P+H
Sbjct: 382 -PHTGLAPVH 390
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 50.1 bits (118), Expect = 3e-06
Identities = 107/396 (27%), Positives = 129/396 (32%), Gaps = 76/396 (19%)
Query: 11 GALGIRNLGLQPFWHRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDT 70
G G+ L P + P P P H D P HP G L TGP P
Sbjct: 866 GEKGLPGLQGPPGFPGPKGP-----PGHQGKDGRPGHP-GQRGELGFQGQTGPPGP---A 916
Query: 71 GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 130
G L P TG + PL + GP P G G + GP PL GP
Sbjct: 917 GVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLR 976
Query: 131 TDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPD 190
GP D GP D GP P+ A GS P
Sbjct: 977 GFPGPKGGPGDPGPTGLKGDKGPPGPV-----------GANGS---------------PG 1010
Query: 191 EEAQF--AGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPL 248
E AGG G P + GP GP GK + + P P G G P PL
Sbjct: 1011 ERGPLGPAGGIGLPGQSGSE----------GPVGPAGKKGSRGERGPPGPTGKDGIPGPL 1060
Query: 249 TPRSDQEGIWPLSEQ-----VTGPCSSGA--------PVLVAGVAGWLKKKSRSAMEEAE 295
P P E+ V P G+ P G+ G + A+
Sbjct: 1061 GPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQ 1120
Query: 296 VAKEEPG-------PGLR-LVGASGWRGASEVWLPGRGLYETCWVPSLG--SSEGGGGGG 345
+ PG G+R VG G G + P E V S+G + G G
Sbjct: 1121 GRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQ 1180
Query: 346 GAVKVE-----PGGMRRAGREGEVGSVRTEAGQVGP 376
G E PGG+ + G GE G R +AG GP
Sbjct: 1181 GPTGSEGTPGLPGGVGQPGAVGEKGE-RGDAGDPGP 1215
Score = 32.0 bits (71), Expect = 0.93
Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 6/128 (4%)
Query: 33 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 92
+ GP P TGP+ G + P G P+ + G L GP PL +G
Sbjct: 1332 EPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPG 1391
Query: 93 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD------TGPLHPLTDTGPLHPLTDTGPLH 146
DTGP G + + G D GP P D GP P+ G
Sbjct: 1392 LKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPG 1451
Query: 147 PLTDTGPL 154
P GPL
Sbjct: 1452 PPGVAGPL 1459
Score = 31.6 bits (70), Expect = 1.2
Identities = 41/148 (27%), Positives = 49/148 (33%), Gaps = 18/148 (12%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P P TGP+ G + P G P+ + G L GP PL +G
Sbjct: 1335 PDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKG 1394
Query: 87 DTGPLHPLTDTGPLHPLTDTGPLHPLTD------TGPLHPLTDTGPLHPLTDTGPLHPLT 140
DTGP G + + G D GP P D GP P+ G P
Sbjct: 1395 DTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPG 1454
Query: 141 DTGPL------------HPLTDTGPLHP 156
GPL P DTGP P
Sbjct: 1455 VAGPLGQKGSKGSPGSMGPRGDTGPAGP 1482
Score = 28.9 bits (63), Expect = 7.9
Identities = 44/149 (29%), Positives = 50/149 (33%), Gaps = 20/149 (13%)
Query: 44 GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 103
GP P D GP P+ G P GPL G G + P DTGP
Sbjct: 1430 GPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKG------SPGSMGPRGDTGP---- 1479
Query: 104 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDP 163
GP P LH L P+ PL P+ + G L L L L Q
Sbjct: 1480 --AGPPGPPGAPAELHGLRRRRRFVPV----PL-PVVEGGLEEVLASLTSL-SLELEQLR 1531
Query: 164 HLPAAAARGSLLRALDAAELTSPHTPDEE 192
P A R L+ PH PD E
Sbjct: 1532 RPPGTAERPGLV--CHELHRNHPHLPDGE 1558
>gi|239755972 PREDICTED: similar to prostate collagen triple helix
[Homo sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 32 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 91
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 92 HPLTDTGPLHPLTDTGPLHP 111
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 100
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 101 HPLTDTGPLHPLTDTGPLHP 120
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 50 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 109
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 110 HPLTDTGPLHPLTDTGPLHP 129
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 59 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 118
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 119 HPLTDTGPLHPLTDTGPLHP 138
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 68 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 127
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 128 HPLTDTGPLHPLTDTGPLHP 147
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 77 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 136
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 137 HPLTDTGPLHPLTDTGPLHP 156
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P+ P + P PL P P GP PL GP P+ GP P+ GP+ PL
Sbjct: 44 PIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPMLPLG 100
Query: 87 DTGPLHPLTDTGPLHP 102
+GP+ P T PL P
Sbjct: 101 PSGPVGP---TSPLFP 113
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 26 RPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
+PL P T P P+ PL P GP+ P GP P+ GP P+ T PL P
Sbjct: 55 QPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 35.8 bits (81), Expect = 0.065
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
T P+ P + P PL P P GP PL GP P+ GP+ P GP
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPI---GPMGPGKPVGPK 93
Query: 155 HPLL 158
P+L
Sbjct: 94 GPML 97
Score = 30.0 bits (66), Expect = 3.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 215 GQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLS 261
G WGP GP G + P P VG P+ P + P S
Sbjct: 63 GSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTS 109
>gi|239750495 PREDICTED: similar to prostate collagen triple helix
[Homo sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 32 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 91
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 92 HPLTDTGPLHPLTDTGPLHP 111
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 100
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 101 HPLTDTGPLHPLTDTGPLHP 120
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 50 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 109
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 110 HPLTDTGPLHPLTDTGPLHP 129
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 59 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 118
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 119 HPLTDTGPLHPLTDTGPLHP 138
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 68 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 127
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 128 HPLTDTGPLHPLTDTGPLHP 147
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 77 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 136
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 137 HPLTDTGPLHPLTDTGPLHP 156
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P+ P + P PL P P GP PL GP P+ GP P+ GP+ PL
Sbjct: 44 PIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPMLPLG 100
Query: 87 DTGPLHPLTDTGPLHP 102
+GP+ P T PL P
Sbjct: 101 PSGPVGP---TSPLFP 113
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 26 RPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
+PL P T P P+ PL P GP+ P GP P+ GP P+ T PL P
Sbjct: 55 QPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 35.8 bits (81), Expect = 0.065
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
T P+ P + P PL P P GP PL GP P+ GP+ P GP
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPI---GPMGPGKPVGPK 93
Query: 155 HPLL 158
P+L
Sbjct: 94 GPML 97
Score = 30.0 bits (66), Expect = 3.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 215 GQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLS 261
G WGP GP G + P P VG P+ P + P S
Sbjct: 63 GSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTS 109
>gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo
sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 32 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 91
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 92 HPLTDTGPLHPLTDTGPLHP 111
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 100
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 101 HPLTDTGPLHPLTDTGPLHP 120
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 50 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 109
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 110 HPLTDTGPLHPLTDTGPLHP 129
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 59 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 118
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 119 HPLTDTGPLHPLTDTGPLHP 138
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 68 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 127
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 128 HPLTDTGPLHPLTDTGPLHP 147
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 77 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 136
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 137 HPLTDTGPLHPLTDTGPLHP 156
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P+ P + P PL P P GP PL GP P+ GP P+ GP+ PL
Sbjct: 44 PIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPMLPLG 100
Query: 87 DTGPLHPLTDTGPLHP 102
+GP+ P T PL P
Sbjct: 101 PSGPVGP---TSPLFP 113
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 26 RPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
+PL P T P P+ PL P GP+ P GP P+ GP P+ T PL P
Sbjct: 55 QPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 35.8 bits (81), Expect = 0.065
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
T P+ P + P PL P P GP PL GP P+ GP+ P GP
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPI---GPMGPGKPVGPK 93
Query: 155 HPLL 158
P+L
Sbjct: 94 GPML 97
Score = 30.0 bits (66), Expect = 3.5
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 215 GQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLS 261
G WGP GP G + P P VG P+ P + P S
Sbjct: 63 GSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTS 109
>gi|209447093 prostate collagen triple helix isoform 2 [Homo
sapiens]
Length = 116
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 32 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 91
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 92 HPLTDTGPLHPLTDTGPLHP 111
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 100
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 101 HPLTDTGPLHPLTDTGPLHP 120
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 50 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 109
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 110 HPLTDTGPLHPLTDTGPLHP 129
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 59 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 118
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 119 HPLTDTGPLHPLTDTGPLHP 138
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 68 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 127
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 128 HPLTDTGPLHPLTDTGPLHP 147
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 77 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 136
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 96
Query: 137 HPLTDTGPLHPLTDTGPLHP 156
PL +GP+ P T PL P
Sbjct: 97 LPLGPSGPVGP---TSPLFP 113
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P+ P + P PL P P GP PL GP P+ GP P+ GP+ PL
Sbjct: 44 PIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPMLPLG 100
Query: 87 DTGPLHPLTDTGPLHP 102
+GP+ P T PL P
Sbjct: 101 PSGPVGP---TSPLFP 113
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 26 RPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
+PL P T P P+ PL P GP+ P GP P+ GP P+ T PL P
Sbjct: 55 QPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 113
Score = 35.8 bits (81), Expect = 0.065
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
T P+ P + P PL P P GP PL GP P+ GP+ P GP
Sbjct: 40 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPI---GPMGPGKPVGPK 93
Query: 155 HPLL 158
P+L
Sbjct: 94 GPML 97
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 173 SLLRALDAAELTSPHTPDEEAQFAGGAGNPV------DTAEASVGSLKGQIWGPAGPEGK 226
+L+ + L S +P +A F +P+ + + G WGP GP
Sbjct: 15 NLMGTSEEGNLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASP 74
Query: 227 WPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLS 261
G + P P VG P+ P + P S
Sbjct: 75 LGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTS 109
>gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens]
Length = 107
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 32 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 91
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 87
Query: 92 HPLTDTGPLHPLTDTGPLHP 111
PL +GP+ P T PL P
Sbjct: 88 LPLGPSGPVGP---TSPLFP 104
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 41 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 100
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 87
Query: 101 HPLTDTGPLHPLTDTGPLHP 120
PL +GP+ P T PL P
Sbjct: 88 LPLGPSGPVGP---TSPLFP 104
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 50 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 109
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 87
Query: 110 HPLTDTGPLHPLTDTGPLHP 129
PL +GP+ P T PL P
Sbjct: 88 LPLGPSGPVGP---TSPLFP 104
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 59 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 118
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 87
Query: 119 HPLTDTGPLHPLTDTGPLHP 138
PL +GP+ P T PL P
Sbjct: 88 LPLGPSGPVGP---TSPLFP 104
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 68 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 127
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 87
Query: 128 HPLTDTGPLHPLTDTGPLHP 147
PL +GP+ P T PL P
Sbjct: 88 LPLGPSGPVGP---TSPLFP 104
Score = 48.9 bits (115), Expect = 7e-06
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 77 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 136
T P+ P + P PL P P GP PL GP P+ GP P+ GP+
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPM 87
Query: 137 HPLTDTGPLHPLTDTGPLHP 156
PL +GP+ P T PL P
Sbjct: 88 LPLGPSGPVGP---TSPLFP 104
Score = 47.8 bits (112), Expect = 2e-05
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P+ P + P PL P P GP PL GP P+ GP P+ GP+ PL
Sbjct: 35 PIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPIGPMGPGKPVGPKGPMLPLG 91
Query: 87 DTGPLHPLTDTGPLHP 102
+GP+ P T PL P
Sbjct: 92 PSGPVGP---TSPLFP 104
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/59 (37%), Positives = 27/59 (45%)
Query: 26 RPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
+PL P T P P+ PL P GP+ P GP P+ GP P+ T PL P
Sbjct: 46 QPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFP 104
Score = 35.8 bits (81), Expect = 0.065
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
T P+ P + P PL P P GP PL GP P+ GP+ P GP
Sbjct: 31 TRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASPL---GPGFPI---GPMGPGKPVGPK 84
Query: 155 HPLL 158
P+L
Sbjct: 85 GPML 88
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 173 SLLRALDAAELTSPHTPDEEAQFAGGAGNPV------DTAEASVGSLKGQIWGPAGPEGK 226
+L+ + L S +P +A F +P+ + + G WGP GP
Sbjct: 6 NLMGTSEEGNLLSTVSPTVKALFGKTRVSPIFPFSPRSPFQPLIPRTPGSPWGPVGPASP 65
Query: 227 WPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLS 261
G + P P VG P+ P + P S
Sbjct: 66 LGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTS 100
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 48.9 bits (115), Expect = 7e-06
Identities = 75/281 (26%), Positives = 97/281 (34%), Gaps = 44/281 (15%)
Query: 25 HRPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 84
H P GP PL GP P +GP + GP P GP P GP
Sbjct: 672 HGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGP---PGPQGH 728
Query: 85 LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP---LHPLTD 141
L GP GP P GP HP G GP+ GP L+P
Sbjct: 729 LGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPV----SQGPLMGLNPRGM 784
Query: 142 TGPLHPLTDTGPL-------HPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQ 194
GP P + GP HP + PH P E+ P +
Sbjct: 785 QGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGS 844
Query: 195 FAG---------GAGNPVDTAEASVG-SLKGQIWGPAGPEGKWPAGLQVRPSV-PLGYVG 243
G G+ + + S+G +G + GP GP+G+ PS P+ +
Sbjct: 845 MLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQ 904
Query: 244 GPAPLT---PRS--DQEGIWPLSEQVTGPCSSGAPVLVAGV 279
PL PR+ +QEG Q TGP P L+ G+
Sbjct: 905 QKTPLLGDGPRAPFNQEG------QSTGP-----PPLIPGL 934
>gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]
Length = 3859
Score = 48.1 bits (113), Expect = 1e-05
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 36 PLHPLT--DTGPLHPLTDTGPLHPLTDT-GPLHPLTDT-GPLHPLTDTG-PLHPLTDTG- 89
P+ P+T DT + GP+ P+T P P+T P+ P+T P+ P+T
Sbjct: 2154 PVVPVTPADTVVVPVTPADGPVIPVTPAESPAIPVTPADSPVVPVTPADDPVVPVTPADS 2213
Query: 90 ---PLHPLTDTGPLHPLT--DTGPLHPLTDTGPLHPLTDT-GPLHPLTD-TGPLHPLTDT 142
P+ P +D P+ P+T DT + GP+ P+T PL P+T P+ P+T
Sbjct: 2214 PIVPVPPASD--PVVPVTPADTPGSPVASADGPVVPVTSADSPLVPVTPGDSPVVPVTPA 2271
Query: 143 -GPLHPLTDT-GPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTP 189
P+ P+T GP+ P+ L DP P A + A P TP
Sbjct: 2272 DSPVFPVTSADGPVFPVTLADDPVFPVTPADDPIFPVSPADSPVVPVTP 2320
Score = 40.0 bits (92), Expect = 0.003
Identities = 67/266 (25%), Positives = 109/266 (40%), Gaps = 24/266 (9%)
Query: 27 PLHPLTDT-GPLHPLTDT-GPLHPLTDTGPLH-PLTDTGPL--HPLTDTGPLHPLT--DT 79
P+ P+T GP+ P+T P+ P+T L P+T L P+ P+T D+
Sbjct: 2084 PVDPVTPADGPVVPVTPADSPVIPVTPADDLIVPVTPADSLIVSVTPADSPVVPVTPADS 2143
Query: 80 GPLHPLTDTGPLHPLT--DTGPLHPLTDTGPLHPLTDT-GPLHPLTDT-GPLHPLTDTG- 134
+ + P+ P+T DT + GP+ P+T P P+T P+ P+T
Sbjct: 2144 PVISVASADSPVVPVTPADTVVVPVTPADGPVIPVTPAESPAIPVTPADSPVVPVTPADD 2203
Query: 135 PLHPLTDTG----PLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPD 190
P+ P+T P+ P +D P+ P+ P P A+A G ++ A P TP
Sbjct: 2204 PVVPVTPADSPIVPVPPASD--PVVPVTPADTPGSPVASADGPVVPVTSADSPLVPVTPG 2261
Query: 191 EEAQFAGGAGNPVDTAEASVGSLKGQIWG-PAGPEGKWPAGLQVRPSVPLGYVGGP-APL 248
+ P D+ V S G ++ + +P P P+ P P+
Sbjct: 2262 DSPVV---PVTPADSPVFPVTSADGPVFPVTLADDPVFPVTPADDPIFPVSPADSPVVPV 2318
Query: 249 TPRS-DQEGIWPLSEQVTGPCSSGAP 273
TP + + P + V S+G+P
Sbjct: 2319 TPANIPVVPVPPANGSVVPVTSAGSP 2344
Score = 37.7 bits (86), Expect = 0.017
Identities = 63/234 (26%), Positives = 88/234 (37%), Gaps = 24/234 (10%)
Query: 62 GPLHPLTDTG----PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP 117
G + P+T G P+ P L TD + G L P P+ P+T
Sbjct: 37 GSVVPVTRAGSPFVPVIPADGLVVLDSSTDVLVVPVFPADGILVPDFADNPVVPVTPADD 96
Query: 118 L-HPLTDT-GPLHPLTDTG-PLHPLTDT-GPLHPLTDT-GPLHPLLLCQDPHLPAAAARG 172
L P+T P+ P+T P+ P+T P+ P+T GP+ P+ P P A+A G
Sbjct: 97 LVFPVTPADSPVIPVTSADDPVVPITPADNPVVPVTSANGPVIPVTPADSPVFPVASADG 156
Query: 173 SLLRALDAAELTSPHTPDEEAQFAGGAGN-------PVDTAEASVGSLKGQIWGPAGPEG 225
++ A P TP + F + P D+A V G + G
Sbjct: 157 PVVPVTPADSPVFPVTPADSPLFPVTPADSPLFPVTPADSAAIPVTPADGPVVHVTPANG 216
Query: 226 K-WPAGLQVRPSVPLGYVGGP-APLTPRSDQEGIWPLSEQVTGPCSSGAPVLVA 277
P P V + P P+TP D I P VT SS PV+ A
Sbjct: 217 TVVPVTPADSPVVTVASTDSPVVPVTPADDP--IVP----VTPADSSFVPVISA 264
Score = 37.4 bits (85), Expect = 0.022
Identities = 62/237 (26%), Positives = 94/237 (39%), Gaps = 59/237 (24%)
Query: 27 PLHPLTDT-GPLHPLTDT-GPLHPLTDT-GPLHPLTDT-GPLHPLTDTG-PLHPLTDT-G 80
P+ P+T GPL P++ GP+ P+T GP+ P+T P P+T P+ P+T
Sbjct: 1455 PVVPVTTPDGPLVPVSPPDGPVVPVTSADGPVVPVTPADSPFIPVTTADDPIVPVTPADS 1514
Query: 81 PLHPLTDTG-PLHPLTDT-GPLHPLTDTG----PLHPLTDTGPLHPLTDT---------- 124
P+ P+T P+ P+T GP+ +T P+ P L TD
Sbjct: 1515 PVVPVTPADIPVVPVTPANGPVIHVTSADCPFVPVIPADGLVALDSSTDVLVVPVSPTDG 1574
Query: 125 ------------------GPLHPLTDT-----------GPLHPLTDTG-PLHPLTDT-GP 153
P+ P+T GP+ P+T P+ P+T GP
Sbjct: 1575 VLVPDLADDPVVSVTIADSPVIPVTPADSTVVPVTLADGPVVPVTSVDIPVVPVTPANGP 1634
Query: 154 LHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASV 210
+ P+ DP + A GS++ A P TP A G PV A++ +
Sbjct: 1635 VAPVTPVDDPVVSVNPADGSVVPVTSADCPVVPVTP------ADGLVVPVTPADSPI 1685
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.6 bits (109), Expect = 4e-05
Identities = 93/349 (26%), Positives = 113/349 (32%), Gaps = 76/349 (21%)
Query: 34 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 93
TGP+ P G ++GP P TG D G + GP P GP P
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRG------EPGPPGPAGFAGP--P 817
Query: 94 LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP 153
D P + G D GP P GP P+ + G G P TG
Sbjct: 818 GADGQP-GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATG- 875
Query: 154 LHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASVGSL 213
P AA R P P +G AG P
Sbjct: 876 -----------FPGAAGR------------VGPPGP------SGNAGPPGPP-------- 898
Query: 214 KGQIWGPAGPE-GKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGA 272
GPAG E GK P G + P+ G VG P P P ++ P ++ G +
Sbjct: 899 -----GPAGKEGGKGPRG-ETGPAGRPGEVGPPGPPGPAGEKGS--PGADGPAGAPGTPG 950
Query: 273 PVLVA---GVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRGASEVWLPGRGLYET 329
P +A GV G ++ EPG GASG RG P
Sbjct: 951 PQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGK-QGPSGASGERGPPGPMGP------- 1002
Query: 330 CWVPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVGSV--RTEAGQVGP 376
P L G G GA PG GR+G G+ R E G GP
Sbjct: 1003 ---PGLAGPPGESGREGA----PGAEGSPGRDGSPGAKGDRGETGPAGP 1044
Score = 41.6 bits (96), Expect = 0.001
Identities = 86/352 (24%), Positives = 110/352 (31%), Gaps = 61/352 (17%)
Query: 34 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL-H 92
TG P TGP P G + + GP P GP + GP P GP +
Sbjct: 328 TGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGN 387
Query: 93 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 152
P D P + P P GP P GP P ++G
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPGGPPGPKGNSG--------- 434
Query: 153 PLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASVGS 212
+P P + + P P E G G P T +
Sbjct: 435 ---------EPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT---GLPG 482
Query: 213 LKGQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQ-------EGIWPLSEQVT 265
G+ GP G G A P P G G P P P+ E P ++ +T
Sbjct: 483 PPGERGGP-GSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541
Query: 266 GPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRG-ASEVWLPGR 324
G S P G G + R PGP G G RG A + PG
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGR------------PGP----PGPPGARGQAGVMGFPG- 584
Query: 325 GLYETCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVRTEAGQVGP 376
P + E G G V PG + AG++GE G+ + G GP
Sbjct: 585 --------PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGA-QGPPGPAGP 627
Score = 34.3 bits (77), Expect = 0.19
Identities = 54/217 (24%), Positives = 65/217 (29%), Gaps = 43/217 (19%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD----------- 78
P+ G +TGP P GP+ GP P D G D
Sbjct: 1056 PVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115
Query: 79 -TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 137
GP P G P +GP GP P G G P+ GP
Sbjct: 1116 LQGPPGPPGSPGEQGPSGASGP------AGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRG 1169
Query: 138 PLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAG 197
D GP+ P GP P P P+A S L P P E+A G
Sbjct: 1170 RTGDAGPVGPPGPPGPPGP------PGPPSAGFDFSFL----------PQPPQEKAHDGG 1213
Query: 198 GAGNPVDT---------AEASVGSLKGQIWGPAGPEG 225
D + ++ SL QI PEG
Sbjct: 1214 RYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEG 1250
Score = 32.0 bits (71), Expect = 0.93
Identities = 97/381 (25%), Positives = 114/381 (29%), Gaps = 72/381 (18%)
Query: 34 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP------------ 81
TG P DTGP P GP P D P P GP P GP
Sbjct: 108 TGVEGPKGDTGPRGPRGPAGP--PGRDGIPGQPGL-PGPPGPPGPPGPPGLGGNFAPQLS 164
Query: 82 -------LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 134
++ GP+ P G P GP G +GP+ P G
Sbjct: 165 YGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPG 224
Query: 135 PLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSL-----LRALDAAE-LTSPHT 188
P D G G P LP A + LD A+ P
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Query: 189 PDEEAQFAGGAGNPVDTAEASVGSLKGQ--IWGPAGPEGKWPAGLQVRPSVPLGYVGGP- 245
P E G G P + +G+ GPAG G A P P G G P
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG 344
Query: 246 -----------APLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEA 294
P PR SE G P AG AG A
Sbjct: 345 FPGAVGAKGEAGPQGPRG--------SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGA 396
Query: 295 EVAKEEPGPGLRLVGASGWRGASEVWLPGRGLYETCWVPSLGSSEGGGGGGGAVKVEPGG 354
+ A PG + GA G+ GA RG PS GG G EPG
Sbjct: 397 KGANGAPG----IAGAPGFPGA-------RG-------PSGPQGPGGPPGPKGNSGEPGA 438
Query: 355 MRRAGREGEVGSVRTEAGQVG 375
G +G+ G+ + E G VG
Sbjct: 439 ---PGSKGDTGA-KGEPGPVG 455
Score = 31.6 bits (70), Expect = 1.2
Identities = 70/269 (26%), Positives = 81/269 (30%), Gaps = 56/269 (20%)
Query: 33 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 92
D GP P GP P+ + G G P TG GP P + GP
Sbjct: 837 DAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP-- 894
Query: 93 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 152
GP P G P +TGP + GP P GP G P G
Sbjct: 895 ----PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGP---PGPAGEKGSPGADGPAGAPG 947
Query: 153 PLHPLLLCQD---------------PHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAG 197
P + P LP + A+ P P AG
Sbjct: 948 TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 1007
Query: 198 GAGNP----VDTAEASVG-----SLKGQIW--GPAGPEGK----------WPAGLQ---- 232
G AE S G KG GPAGP G PAG
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 233 ----VRPSVPLGYVG--GPA-PLTPRSDQ 254
P+ P+G VG GPA P PR D+
Sbjct: 1068 ETGPAGPAGPVGPVGARGPAGPQGPRGDK 1096
Score = 31.2 bits (69), Expect = 1.6
Identities = 51/218 (23%), Positives = 61/218 (27%), Gaps = 1/218 (0%)
Query: 35 GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 94
GP GP + GP P+ G P ++G G G
Sbjct: 977 GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Query: 95 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPL 154
+TGP P G GP D G P GP+ P+ GP P G
Sbjct: 1037 GETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDK 1096
Query: 155 HPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASVGSLK 214
D + L P + AG G P L
Sbjct: 1097 GETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLN 1156
Query: 215 GQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRS 252
G + GP GP G P P G G P P P S
Sbjct: 1157 G-LPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS 1193
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 45.4 bits (106), Expect = 8e-05
Identities = 95/375 (25%), Positives = 122/375 (32%), Gaps = 63/375 (16%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 89
P GP P G P GP GP P + GP P G P G
Sbjct: 890 PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG 949
Query: 90 PLHPLTDTGPLHP--------LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 141
P P D P HP TGP P GP P +TGP+ GP P +
Sbjct: 950 P--PGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 1007
Query: 142 TGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGN 201
G LP AA + ++ P F G G
Sbjct: 1008 QG---------------------LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL 1046
Query: 202 PVDTAEASVGSLKGQ-IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTP--RSDQEGIW 258
P A+ + G G+ GP GP G + P+G G P P P + ++G
Sbjct: 1047 P--GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGA- 1103
Query: 259 PLSEQVTGPCSSG---APVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRG 315
P + GP PV + G AG ++ E+ EPG G+ G +G
Sbjct: 1104 PGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG-DKGEIG--EPGQ----KGSKGDKG 1156
Query: 316 ASEVWLPG-RGLYETCWVPSLGSSEGGGGGGG-----AVKVEPGGMRRAGREGEVG---- 365
E PG GL P + +G G G K + G G G +G
Sbjct: 1157 --ENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGL 1214
Query: 366 ----SVRTEAGQVGP 376
+ E G VGP
Sbjct: 1215 PGPPGEKGENGDVGP 1229
Score = 41.6 bits (96), Expect = 0.001
Identities = 108/412 (26%), Positives = 128/412 (31%), Gaps = 71/412 (17%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P P G P GP GP P + GP P G P GP P
Sbjct: 896 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--PGK 953
Query: 87 DTGPLHP--------LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD------ 132
D P HP TGP P GP P +TGP+ GP P +
Sbjct: 954 DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA 1013
Query: 133 TGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEE 192
G D GP GP + LP A L P E
Sbjct: 1014 AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1073
Query: 193 AQFAGGA------------GNPVDTAEASVGSLKGQIWGPAGPEG-KWPAGLQVRPSVPL 239
AG A G P E KG GPAG +G + P GL P+ P
Sbjct: 1074 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGP-QGPAGRDGVQGPVGLP-GPAGPA 1131
Query: 240 ---------GYVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGW------LK 284
G +G P + D+ P GP PV G+AG
Sbjct: 1132 GSPGEDGDKGEIGEPGQKGSKGDKGENGP-----PGPPGLQGPVGAPGIAGGDGEPGPRG 1186
Query: 285 KKSRSAMEEAEVAKEEPGP----GLR-LVGASGWRG----ASEVWLPG----RGLYETCW 331
++ + E A+ PGP GL+ L G G +G + PG RG
Sbjct: 1187 QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1246
Query: 332 VPSLGSSEG--GGGGGGAVKVEPGGMRRAGREGEVG-----SVRTEAGQVGP 376
G G GG K EPG G GE G R E G+ GP
Sbjct: 1247 ADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP 1298
Score = 33.9 bits (76), Expect = 0.25
Identities = 87/348 (25%), Positives = 112/348 (32%), Gaps = 54/348 (15%)
Query: 42 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 101
D GP+ GP P GP P GP P G + + + G + GP
Sbjct: 1226 DVGPM------GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPG 1279
Query: 102 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQ 161
GP + G P GP G P + GP+ D GP
Sbjct: 1280 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-------- 1331
Query: 162 DPHLPAAAARGSLLRALDAAELTSPHTPDEEAQF--AGGAGNPVDTAEASVGSLKGQ--- 216
P P A + + D E P P AG G P +G+
Sbjct: 1332 -PGEPGPAGQDGV--GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1388
Query: 217 --IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRS-----DQEGIWPLSEQVTGPCS 269
G AG EG P G + P P G G P P R ++G+ P + GP
Sbjct: 1389 KGAKGEAGAEG--PPG-KTGPVGPQGPAGKPGPEGLRGIPGPVGEQGL-PGAAGQDGPPG 1444
Query: 270 SGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGL-RLVGASGWRGASEVWLPGRGLYE 328
P + G+ G K E+ PGL L+G G +G RGL
Sbjct: 1445 PMGPPGLPGLKGDPGSKG-----------EKGHPGLIGLIGPPGEQGEK----GDRGLPG 1489
Query: 329 TCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVRTEAGQVGP 376
T P +GG G PG G +G G+ G GP
Sbjct: 1490 TQGSPG-AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN----KGSTGP 1532
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 45.4 bits (106), Expect = 8e-05
Identities = 95/375 (25%), Positives = 122/375 (32%), Gaps = 63/375 (16%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 89
P GP P G P GP GP P + GP P G P G
Sbjct: 839 PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG 898
Query: 90 PLHPLTDTGPLHP--------LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 141
P P D P HP TGP P GP P +TGP+ GP P +
Sbjct: 899 P--PGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 956
Query: 142 TGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGN 201
G LP AA + ++ P F G G
Sbjct: 957 QG---------------------LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL 995
Query: 202 PVDTAEASVGSLKGQ-IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTP--RSDQEGIW 258
P A+ + G G+ GP GP G + P+G G P P P + ++G
Sbjct: 996 P--GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGA- 1052
Query: 259 PLSEQVTGPCSSG---APVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRG 315
P + GP PV + G AG ++ E+ EPG G+ G +G
Sbjct: 1053 PGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG-DKGEIG--EPGQ----KGSKGDKG 1105
Query: 316 ASEVWLPG-RGLYETCWVPSLGSSEGGGGGGG-----AVKVEPGGMRRAGREGEVG---- 365
E PG GL P + +G G G K + G G G +G
Sbjct: 1106 --ENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGL 1163
Query: 366 ----SVRTEAGQVGP 376
+ E G VGP
Sbjct: 1164 PGPPGEKGENGDVGP 1178
Score = 41.6 bits (96), Expect = 0.001
Identities = 108/412 (26%), Positives = 128/412 (31%), Gaps = 71/412 (17%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P P G P GP GP P + GP P G P GP P
Sbjct: 845 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--PGK 902
Query: 87 DTGPLHP--------LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD------ 132
D P HP TGP P GP P +TGP+ GP P +
Sbjct: 903 DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA 962
Query: 133 TGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEE 192
G D GP GP + LP A L P E
Sbjct: 963 AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1022
Query: 193 AQFAGGA------------GNPVDTAEASVGSLKGQIWGPAGPEG-KWPAGLQVRPSVPL 239
AG A G P E KG GPAG +G + P GL P+ P
Sbjct: 1023 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGP-QGPAGRDGVQGPVGLP-GPAGPA 1080
Query: 240 ---------GYVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGW------LK 284
G +G P + D+ P GP PV G+AG
Sbjct: 1081 GSPGEDGDKGEIGEPGQKGSKGDKGENGP-----PGPPGLQGPVGAPGIAGGDGEPGPRG 1135
Query: 285 KKSRSAMEEAEVAKEEPGP----GLR-LVGASGWRG----ASEVWLPG----RGLYETCW 331
++ + E A+ PGP GL+ L G G +G + PG RG
Sbjct: 1136 QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1195
Query: 332 VPSLGSSEG--GGGGGGAVKVEPGGMRRAGREGEVG-----SVRTEAGQVGP 376
G G GG K EPG G GE G R E G+ GP
Sbjct: 1196 ADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP 1247
Score = 33.9 bits (76), Expect = 0.25
Identities = 87/348 (25%), Positives = 112/348 (32%), Gaps = 54/348 (15%)
Query: 42 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 101
D GP+ GP P GP P GP P G + + + G + GP
Sbjct: 1175 DVGPM------GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPG 1228
Query: 102 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQ 161
GP + G P GP G P + GP+ D GP
Sbjct: 1229 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-------- 1280
Query: 162 DPHLPAAAARGSLLRALDAAELTSPHTPDEEAQF--AGGAGNPVDTAEASVGSLKGQ--- 216
P P A + + D E P P AG G P +G+
Sbjct: 1281 -PGEPGPAGQDGV--GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1337
Query: 217 --IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRS-----DQEGIWPLSEQVTGPCS 269
G AG EG P G + P P G G P P R ++G+ P + GP
Sbjct: 1338 KGAKGEAGAEG--PPG-KTGPVGPQGPAGKPGPEGLRGIPGPVGEQGL-PGAAGQDGPPG 1393
Query: 270 SGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGL-RLVGASGWRGASEVWLPGRGLYE 328
P + G+ G K E+ PGL L+G G +G RGL
Sbjct: 1394 PMGPPGLPGLKGDPGSKG-----------EKGHPGLIGLIGPPGEQGEK----GDRGLPG 1438
Query: 329 TCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVRTEAGQVGP 376
T P +GG G PG G +G G+ G GP
Sbjct: 1439 TQGSPG-AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN----KGSTGP 1481
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 45.4 bits (106), Expect = 8e-05
Identities = 95/375 (25%), Positives = 122/375 (32%), Gaps = 63/375 (16%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 89
P GP P G P GP GP P + GP P G P G
Sbjct: 878 PRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG 937
Query: 90 PLHPLTDTGPLHP--------LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 141
P P D P HP TGP P GP P +TGP+ GP P +
Sbjct: 938 P--PGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGE 995
Query: 142 TGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQFAGGAGN 201
G LP AA + ++ P F G G
Sbjct: 996 QG---------------------LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGL 1034
Query: 202 PVDTAEASVGSLKGQ-IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTP--RSDQEGIW 258
P A+ + G G+ GP GP G + P+G G P P P + ++G
Sbjct: 1035 P--GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGA- 1091
Query: 259 PLSEQVTGPCSSG---APVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRG 315
P + GP PV + G AG ++ E+ EPG G+ G +G
Sbjct: 1092 PGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDG-DKGEIG--EPGQ----KGSKGDKG 1144
Query: 316 ASEVWLPG-RGLYETCWVPSLGSSEGGGGGGG-----AVKVEPGGMRRAGREGEVG---- 365
E PG GL P + +G G G K + G G G +G
Sbjct: 1145 --ENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGL 1202
Query: 366 ----SVRTEAGQVGP 376
+ E G VGP
Sbjct: 1203 PGPPGEKGENGDVGP 1217
Score = 41.6 bits (96), Expect = 0.001
Identities = 108/412 (26%), Positives = 128/412 (31%), Gaps = 71/412 (17%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 86
P P G P GP GP P + GP P G P GP P
Sbjct: 884 PTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP--PGK 941
Query: 87 DTGPLHP--------LTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD------ 132
D P HP TGP P GP P +TGP+ GP P +
Sbjct: 942 DGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGA 1001
Query: 133 TGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEE 192
G D GP GP + LP A L P E
Sbjct: 1002 AGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1061
Query: 193 AQFAGGA------------GNPVDTAEASVGSLKGQIWGPAGPEG-KWPAGLQVRPSVPL 239
AG A G P E KG GPAG +G + P GL P+ P
Sbjct: 1062 RGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGP-QGPAGRDGVQGPVGLP-GPAGPA 1119
Query: 240 ---------GYVGGPAPLTPRSDQEGIWPLSEQVTGPCSSGAPVLVAGVAGW------LK 284
G +G P + D+ P GP PV G+AG
Sbjct: 1120 GSPGEDGDKGEIGEPGQKGSKGDKGENGP-----PGPPGLQGPVGAPGIAGGDGEPGPRG 1174
Query: 285 KKSRSAMEEAEVAKEEPGP----GLR-LVGASGWRG----ASEVWLPG----RGLYETCW 331
++ + E A+ PGP GL+ L G G +G + PG RG
Sbjct: 1175 QQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNG 1234
Query: 332 VPSLGSSEG--GGGGGGAVKVEPGGMRRAGREGEVG-----SVRTEAGQVGP 376
G G GG K EPG G GE G R E G+ GP
Sbjct: 1235 ADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGP 1286
Score = 33.9 bits (76), Expect = 0.25
Identities = 87/348 (25%), Positives = 112/348 (32%), Gaps = 54/348 (15%)
Query: 42 DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH 101
D GP+ GP P GP P GP P G + + + G + GP
Sbjct: 1214 DVGPM------GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPG 1267
Query: 102 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQ 161
GP + G P GP G P + GP+ D GP
Sbjct: 1268 EAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP-------- 1319
Query: 162 DPHLPAAAARGSLLRALDAAELTSPHTPDEEAQF--AGGAGNPVDTAEASVGSLKGQ--- 216
P P A + + D E P P AG G P +G+
Sbjct: 1320 -PGEPGPAGQDGV--GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1376
Query: 217 --IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRS-----DQEGIWPLSEQVTGPCS 269
G AG EG P G + P P G G P P R ++G+ P + GP
Sbjct: 1377 KGAKGEAGAEG--PPG-KTGPVGPQGPAGKPGPEGLRGIPGPVGEQGL-PGAAGQDGPPG 1432
Query: 270 SGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGL-RLVGASGWRGASEVWLPGRGLYE 328
P + G+ G K E+ PGL L+G G +G RGL
Sbjct: 1433 PMGPPGLPGLKGDPGSKG-----------EKGHPGLIGLIGPPGEQGEK----GDRGLPG 1477
Query: 329 TCWVPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVRTEAGQVGP 376
T P +GG G PG G +G G+ G GP
Sbjct: 1478 TQGSPG-AKGDGGIPGPAGPLGPPGPPGLPGPQGPKGN----KGSTGP 1520
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 44.7 bits (104), Expect = 1e-04
Identities = 47/141 (33%), Positives = 50/141 (35%), Gaps = 18/141 (12%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT-----DTGPLHPLTDTGPLHPLTDTGP 81
P+ P T L P T P P T T P T T P+ P T T L P T P
Sbjct: 1507 PITPPASTTTLPPTTTPSP--PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSP 1564
Query: 82 LHPLTDTGP----LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT-----D 132
T T P P T T P P T P T P P T T P T
Sbjct: 1565 PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSP--PTTTTTTPPPTTTPSPPT 1622
Query: 133 TGPLHPLTDTGPLHPLTDTGP 153
T P+ P T T L P T P
Sbjct: 1623 TTPITPPTSTTTLPPTTTPSP 1643
Score = 43.5 bits (101), Expect = 3e-04
Identities = 51/160 (31%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 89
P T T P P T P T P P T T P T P T P+ P T T
Sbjct: 1580 PPTTTTPSPPTITTTTPPPTTTPSP--PTTTTTTPPPTTTPSP----PTTTPITPPTSTT 1633
Query: 90 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT 149
L P T P P T T P P T T P T T P P+T T P T P P+T
Sbjct: 1634 TLPPTTTPSP-PPTTTTTP--PPTTTP--SPPTTTTPSPPITTT--TTPPPTTTPSSPIT 1686
Query: 150 DTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTP 189
T P P P P + + T+P P
Sbjct: 1687 TT-PSPPTTTMTTPS-PTTTPSSPITTTTTPSSTTTPSPP 1724
Score = 42.4 bits (98), Expect = 7e-04
Identities = 46/137 (33%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 34 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT-----DTGPLHPLTDTGPLHPLTDT 88
T P+ P T L P T P P T T P T T P+ P T T L P T
Sbjct: 1505 TTPITPPASTTTLPPTTTPSP--PTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTP 1562
Query: 89 GPLHPLTDTGP----LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT---- 140
P T T P P T T P P T P T P P T T P T
Sbjct: 1563 SPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSP--PTTTTTTPPPTTTPSP 1620
Query: 141 -DTGPLHPLTDTGPLHP 156
T P+ P T T L P
Sbjct: 1621 PTTTPITPPTSTTTLPP 1637
Score = 40.0 bits (92), Expect = 0.003
Identities = 45/139 (32%), Positives = 50/139 (35%), Gaps = 21/139 (15%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT-----DTGPLHP 84
P T P P+T T P T P P++ T P T P P T T P P
Sbjct: 1432 PPPTTTPSPPITTTTTPPPTTTPSP--PISTTTTPPPTTTPSP--PTTTPSPPTTTPSPP 1487
Query: 85 LTDTGPLHPLT-----DTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLT-----DTG 134
T T P T T P+ P T L P T P P T T P T T
Sbjct: 1488 TTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPSP--PTTTTTTPPPTTTPSPPTTT 1545
Query: 135 PLHPLTDTGPLHPLTDTGP 153
P+ P T T L P T P
Sbjct: 1546 PITPPTSTTTLPPTTTPSP 1564
>gi|148536848 carboxyl ester lipase precursor [Homo sapiens]
Length = 756
Score = 43.9 bits (102), Expect = 2e-04
Identities = 55/198 (27%), Positives = 74/198 (37%), Gaps = 43/198 (21%)
Query: 84 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG--PLHPLTDTG--PLHPLTDTG--PLH 137
P T P+ TG ++T P+ P D+G P+ P D+G P+ P D+G P+
Sbjct: 564 PPTGDSEATPVPPTGD----SETAPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVP 619
Query: 138 PLTDTG--PLHPLTDTGPLHPLLLCQDPHLPAAAARGSLLRALDAAELTSPHTPDEEAQF 195
P D+G P+ P D+G P +P G+ P P
Sbjct: 620 PTGDSGAPPVPPTGDSGA---------PPVPPTGDSGA------------PPVPP----- 653
Query: 196 AGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQE 255
G +G P G+ G AGP P G P VP G P+TP D E
Sbjct: 654 TGDSGAPPVPPTGDSGAPPVPPTGDAGPPPVPPTGDSGAPPVPPTGDSGAPPVTPTGDSE 713
Query: 256 GIWPLSEQVTGPCSSGAP 273
+ V SGAP
Sbjct: 714 -----TAPVPPTGDSGAP 726
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 43.1 bits (100), Expect = 4e-04
Identities = 46/145 (31%), Positives = 53/145 (36%), Gaps = 24/145 (16%)
Query: 25 HRPLHPLTDT-----GPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH-------PLTDTGP 72
H P+TDT G PL DT T L P+TDT P+TDT
Sbjct: 2829 HATSLPVTDTSSASTGHATPLPDTDTSSASTGHATLLPVTDTSSASIGHATSLPVTDTSS 2888
Query: 73 LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTD 132
+ TG PL T P T P+TDT TG +PL T P T
Sbjct: 2889 I----STGHATPLHVTSPSSASTGHATPLPVTDTSS----ASTGHANPLHVTSPSSASTG 2940
Query: 133 TGPLHPLTDTGPLHPLTDTGPLHPL 157
P+TDT TG PL
Sbjct: 2941 HATPLPVTDTSS----ASTGHATPL 2961
Score = 28.9 bits (63), Expect = 7.9
Identities = 44/172 (25%), Positives = 63/172 (36%), Gaps = 26/172 (15%)
Query: 115 TGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLH-PLLLCQDPHLPAAAARGS 173
T + P+TDT T T P T +G H ++ P P + PA G
Sbjct: 652 TRSVSPMTDTK-----TVTTPGSSFTASG--HSPSEIVPQDAPTISAATTFAPAPTGDGH 704
Query: 174 LLRALDAAELTSPHTPDEEAQFAGGAGNPVDTAEASVGSL---KGQIWGPAGPEGKW-PA 229
+A A +P + D +GG T+ + G+L + P GPEG+W A
Sbjct: 705 TTQAPTTALQAAPSSHDATLGPSGG------TSLSKTGALTLANSVVSTPGGPEGQWTSA 758
Query: 230 GLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLSE-QVTGPCSSGAPVLVAGVA 280
P A +T E + Q + P SSG+ AG A
Sbjct: 759 SASTSPDT-------AAAMTHTHQAESTEASGQTQTSEPASSGSRTTSAGTA 803
>gi|16753207 ubiquilin 2 [Homo sapiens]
Length = 624
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 32 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP- 90
T GP+ P+T GP+ GP+ P T GP+ P+ TGP P TG P TGP
Sbjct: 487 TAIGPVGPVTPIGPI------GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP---TGPT 537
Query: 91 LHPLTDTGPLHPLTDTGP 108
+ + P +++GP
Sbjct: 538 VSSAAPSETTSPTSESGP 555
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 50 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP- 108
T GP+ P+T GP+ GP+ P T GP+ P+ TGP P TG P TGP
Sbjct: 487 TAIGPVGPVTPIGPI------GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP---TGPT 537
Query: 109 LHPLTDTGPLHPLTDTGP 126
+ + P +++GP
Sbjct: 538 VSSAAPSETTSPTSESGP 555
Score = 43.1 bits (100), Expect = 4e-04
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 77 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP- 135
T GP+ P+T GP+ GP+ P T GP+ P+ TGP P TG P TGP
Sbjct: 487 TAIGPVGPVTPIGPI------GPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP---TGPT 537
Query: 136 LHPLTDTGPLHPLTDTGP 153
+ + P +++GP
Sbjct: 538 VSSAAPSETTSPTSESGP 555
Score = 38.5 bits (88), Expect = 0.010
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGP-LHPLTDTGPLHPL 85
P+ P+ GP+ P T GP+ P+ TGP P TG P TGP + + P
Sbjct: 494 PVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGP---TGPTVSSAAPSETTSPT 550
Query: 86 TDTGP 90
+++GP
Sbjct: 551 SESGP 555
Score = 37.7 bits (86), Expect = 0.017
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 113 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHP 156
T GP+ P+T GP+ GP+ P T GP+ P+ TGP P
Sbjct: 487 TAIGPVGPVTPIGPI------GPIVPFTPIGPIGPIGPTGPAAP 524
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 104 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDT---GPLHPLLLC 160
T GP+ P+T GP+ P+ P P+ GP+ P TGP P T GP P +
Sbjct: 487 TAIGPVGPVTPIGPIGPIV---PFTPIGPIGPIGP---TGPAAPPGSTGSGGPTGPTVSS 540
Query: 161 QDPHLPAAAARGS---------LLRALDAAELTSPHTPDEEAQF 195
P + S +++AL A +P P+ E +F
Sbjct: 541 AAPSETTSPTSESGPNQQFIQQMVQALAGA--NAPQLPNPEVRF 582
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/188 (27%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 202 PVDTAEASVGSLKGQ-----IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEG 256
P + + +LKG+ I GP GP G P G PS PLG+ G P P+ P
Sbjct: 197 PAALRSSQIIALKGEQSQASIQGPPGPPG--PPG----PSGPLGHPGLPGPMGPPG---- 246
Query: 257 IWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRGA 316
+ GP + G G ++ M AK PG + +G +G
Sbjct: 247 -------LPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG-----IAVAGMKG- 293
Query: 317 SEVWLPG----RGLYETCWVPSL----GSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVR 368
E +PG +G + +P L G G G + EPG G G G
Sbjct: 294 -EPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG 352
Query: 369 TEAGQVGP 376
+ GQVGP
Sbjct: 353 VD-GQVGP 359
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/188 (27%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 202 PVDTAEASVGSLKGQ-----IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEG 256
P + + +LKG+ I GP GP G P G PS PLG+ G P P+ P
Sbjct: 188 PAALRSSQIIALKGEQSQASIQGPPGPPG--PPG----PSGPLGHPGLPGPMGPPG---- 237
Query: 257 IWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRGA 316
+ GP + G G ++ M AK PG + +G +G
Sbjct: 238 -------LPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG-----IAVAGMKG- 284
Query: 317 SEVWLPG----RGLYETCWVPSL----GSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVR 368
E +PG +G + +P L G G G + EPG G G G
Sbjct: 285 -EPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG 343
Query: 369 TEAGQVGP 376
+ GQVGP
Sbjct: 344 VD-GQVGP 350
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/188 (27%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 202 PVDTAEASVGSLKGQ-----IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEG 256
P + + +LKG+ I GP GP G P G PS PLG+ G P P+ P
Sbjct: 226 PAALRSSQIIALKGEQSQASIQGPPGPPG--PPG----PSGPLGHPGLPGPMGPPG---- 275
Query: 257 IWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRGA 316
+ GP + G G ++ M AK PG + +G +G
Sbjct: 276 -------LPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG-----IAVAGMKG- 322
Query: 317 SEVWLPG----RGLYETCWVPSL----GSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVR 368
E +PG +G + +P L G G G + EPG G G G
Sbjct: 323 -EPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG 381
Query: 369 TEAGQVGP 376
+ GQVGP
Sbjct: 382 VD-GQVGP 388
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 41.6 bits (96), Expect = 0.001
Identities = 52/188 (27%), Positives = 71/188 (37%), Gaps = 38/188 (20%)
Query: 202 PVDTAEASVGSLKGQ-----IWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEG 256
P + + +LKG+ I GP GP G P G PS PLG+ G P P+ P
Sbjct: 226 PAALRSSQIIALKGEQSQASIQGPPGPPG--PPG----PSGPLGHPGLPGPMGPPG---- 275
Query: 257 IWPLSEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRGA 316
+ GP + G G ++ M AK PG + +G +G
Sbjct: 276 -------LPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG-----IAVAGMKG- 322
Query: 317 SEVWLPG----RGLYETCWVPSL----GSSEGGGGGGGAVKVEPGGMRRAGREGEVGSVR 368
E +PG +G + +P L G G G + EPG G G G
Sbjct: 323 -EPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAG 381
Query: 369 TEAGQVGP 376
+ GQVGP
Sbjct: 382 VD-GQVGP 388
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 41.2 bits (95), Expect = 0.002
Identities = 54/177 (30%), Positives = 64/177 (36%), Gaps = 29/177 (16%)
Query: 81 PLHPLTDTGPLHPLTDTGPLHPLTDTG--PLHPLTDTGPLHPLTDTGPLHPLTDTGP-LH 137
P+HP G L P G L T+ G P P GP +G P T TG
Sbjct: 3668 PVHPRKAVGSLAP----GELARGTENGMKPATPKAKPGPSSQ--GSGSPRPGTKTGGGSQ 3721
Query: 138 PLTDTGPLHPLTDTGPLHPLLLCQDP---HLPAAAARGSLLRALDAAELTSPHTPDEEAQ 194
P +G L T T P P + P LPA A S + A PH
Sbjct: 3722 PQPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPH------- 3774
Query: 195 FAGGAGNPVDTAEASVGSLKGQIWGPAGPEGKWPAGLQVRPSVPLGYVGGPAPLTPR 251
G+ P + E+S KGQ+ GPA E G PS P P TPR
Sbjct: 3775 ---GSLGPKEKGESSTKRKKGQVPGPARSESVGSFGR--APSAP-----DKPPRTPR 3821
>gi|239753818 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 84 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 143
P + P PL+ GP P+ GP P + +GP+ GP P++ P P +G
Sbjct: 18 PGSPGSPCSPLSPFGPGGPI---GPTSPFSPSGPM------GPFFPVSPWSPFSPARPSG 68
Query: 144 PLHPL--TDTGPLH-PLLLCQDPHL 165
P+ PL ++ P H LL C+ HL
Sbjct: 69 PVLPLKPSERFPFHLSLLSCRLYHL 93
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 87
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 88 TGPLH 92
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 39 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 96
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 97 TGPLH 101
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 48 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 105
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 106 TGPLH 110
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 57 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 114
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 115 TGPLH 119
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 66 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 123
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 124 TGPLH 128
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 75 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 132
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 133 TGPLH 137
P H
Sbjct: 78 RFPFH 82
Score = 39.7 bits (91), Expect = 0.004
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TDTGPLH 83
P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ P H
Sbjct: 24 PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFPFH 82
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 40.8 bits (94), Expect = 0.002
Identities = 84/334 (25%), Positives = 107/334 (32%), Gaps = 51/334 (15%)
Query: 54 PLHPLTDTGP-LHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL 112
P+ PL P P T PL L P P P P+ PL P P
Sbjct: 777 PMSPLAKPPPQAPPALATPPLQALPSPPASFP--GQAPFSPSASL-PMSPLATPPPQAPP 833
Query: 113 TDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARG 172
PL + + P P T P P T GP + +GP L L P P + +
Sbjct: 834 VLAAPLLQVPPSPPASP-TLQAPRRPPTP-GP--DTSVSGPRLTLALAPGPPPPPSRSPS 889
Query: 173 SLLRALDAAELTSP--HTPDEEAQF-----AGGAGNPVDTAEASVGSLKGQIWGPAGP-- 223
S L D A +S TP+E + G A +P AE + GPA P
Sbjct: 890 STLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLA 949
Query: 224 -EGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEGIWPLSEQVT---GPCSSGAPVLVAGV 279
G A L P+ G G + E P + P +SG
Sbjct: 950 FRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAG 1009
Query: 280 AGWLKKKSRSAME--------EAEVAKEEPGPGLRLVGASGWRGASEVWLPGRGLYETCW 331
AG + + A +A V + L L A G G S
Sbjct: 1010 AGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGS-------------- 1055
Query: 332 VPSLGSSEGGGGGGGAVKVEPGGMRRAGREGEVG 365
G GG GGG GG R A + E+G
Sbjct: 1056 ----GGGPGGAEGGGVT----GGARAALSDAELG 1081
>gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo
sapiens]
Length = 148
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 84 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 143
P + P PL+ GP P+ GP P + +GP+ GP P++ P P +G
Sbjct: 18 PGSPGSPCSPLSPFGPGGPI---GPTSPFSPSGPM------GPFFPVSPWSPFSPARPSG 68
Query: 144 PLHPL--TDTGPLH-PLLLCQDPHL 165
P+ PL ++ P H LL C+ HL
Sbjct: 69 PVLPLKPSERFPFHLSLLSCRLYHL 93
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 87
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 88 TGPLH 92
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 39 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 96
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 97 TGPLH 101
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 48 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 105
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 106 TGPLH 110
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 57 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 114
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 115 TGPLH 119
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 66 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 123
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 124 TGPLH 128
P H
Sbjct: 78 RFPFH 82
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 75 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 132
P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++
Sbjct: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
Query: 133 TGPLH 137
P H
Sbjct: 78 RFPFH 82
Score = 39.7 bits (91), Expect = 0.004
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TDTGPLH 83
P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ P H
Sbjct: 24 PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFPFH 82
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,362,937
Number of Sequences: 37866
Number of extensions: 1356562
Number of successful extensions: 7432
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 4988
Number of HSP's gapped (non-prelim): 1401
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.