COL13A1 13981

Name: COL13A1	Sequence: fasta or formatted (668aa)		NCBI GI: 22027601
Description: alpha 1 type XIII collagen isoform 15		Referenced in: Collagen
Other entries for this name: alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 46 3 C cysteine 1.2 8 1 D aspartate 3.3 22 1 E glutamate 6.0 40 1 F phenylalanine 0.7 5 1 G glycine 26.0 174 3 H histidine 1.6 11 1 I isoleucine 2.7 18 2 K lysine 6.4 43 2 L leucine 7.0 47 2 M methionine 1.9 13 1 N asparagine 1.3 9 1 P proline 17.2 115 2 Q glutamine 4.2 28 2 R arginine 4.6 31 4 S serine 3.3 22 2 T threonine 2.4 16 1 V valine 2.2 15 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 15 COL13A1 0.991 alpha 1 type XIII collagen isoform 13 COL13A1 0.987 alpha 1 type XIII collagen isoform 5 COL13A1 0.985 alpha 1 type XIII collagen isoform 6 COL13A1 0.984 alpha 1 type XIII collagen isoform 8 COL13A1 0.978 alpha 1 type XIII collagen isoform 1 COL13A1 0.972 alpha 1 type XIII collagen isoform 20 COL13A1 0.970 alpha 1 type XIII collagen isoform 12 COL13A1 0.964 alpha 1 type XIII collagen isoform 7 COL13A1 0.963 alpha 1 type XIII collagen isoform 11 COL13A1 0.957 alpha 1 type XIII collagen isoform 4 COL13A1 0.954 alpha 1 type XIII collagen isoform 10 COL13A1 0.954 alpha 1 type XIII collagen isoform 2 COL13A1 0.945 alpha 1 type XIII collagen isoform 3 COL13A1 0.930 alpha 1 type XIII collagen isoform 14 COL13A1 0.924 alpha 1 type XIII collagen isoform 9 COL13A1 0.915 alpha 1 type XIII collagen isoform 17 COL13A1 0.911 alpha 1 type XIII collagen isoform 18 COL13A1 0.891 alpha 1 type XIII collagen isoform 19 COL13A1 0.885 alpha 1 type XIII collagen isoform 16 COL25A1 0.321 collagen, type XXV, alpha 1 isoform 1 COL4A5 0.301 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.299 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.299 type IV collagen alpha 5 isoform 3 precursor COL5A1 0.295 alpha 1 type V collagen preproprotein COL5A3 0.292 collagen, type V, alpha 3 preproprotein COL5A2 0.290 alpha 2 type V collagen preproprotein COL1A1 0.290 alpha 1 type I collagen preproprotein COL25A1 0.288 collagen, type XXV, alpha 1 isoform 2 COL3A1 0.287 collagen type III alpha 1 preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.