| Name: COL13A1 | Sequence: fasta or formatted (610aa) | NCBI GI: 22027609 | |
|
Description: alpha 1 type XIII collagen isoform 19
|
Referenced in:
| ||
Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 | |||
|
Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.9 42 3 C cysteine 1.1 7 1 D aspartate 2.8 17 1 E glutamate 6.4 39 1 F phenylalanine 0.8 5 1 G glycine 25.7 157 3 H histidine 1.8 11 1 I isoleucine 2.5 15 2 K lysine 6.2 38 1 L leucine 7.2 44 2 M methionine 2.0 12 1 N asparagine 1.5 9 1 P proline 17.4 106 2 Q glutamine 4.4 27 2 R arginine 4.4 27 4 S serine 3.1 19 2 T threonine 2.6 16 1 V valine 2.3 14 1 W tryptophan 0.3 2 1 Y tyrosine 0.5 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 19 COL13A1 0.976 alpha 1 type XIII collagen isoform 15 COL13A1 0.966 alpha 1 type XIII collagen isoform 13 COL13A1 0.963 alpha 1 type XIII collagen isoform 9 COL13A1 0.961 alpha 1 type XIII collagen isoform 5 COL13A1 0.959 alpha 1 type XIII collagen isoform 6 COL13A1 0.958 alpha 1 type XIII collagen isoform 8 COL13A1 0.956 alpha 1 type XIII collagen isoform 3 COL13A1 0.955 alpha 1 type XIII collagen isoform 2 COL13A1 0.951 alpha 1 type XIII collagen isoform 1 COL13A1 0.950 alpha 1 type XIII collagen isoform 17 COL13A1 0.946 alpha 1 type XIII collagen isoform 20 COL13A1 0.943 alpha 1 type XIII collagen isoform 12 COL13A1 0.936 alpha 1 type XIII collagen isoform 7 COL13A1 0.936 alpha 1 type XIII collagen isoform 11 COL13A1 0.929 alpha 1 type XIII collagen isoform 14 COL13A1 0.929 alpha 1 type XIII collagen isoform 4 COL13A1 0.925 alpha 1 type XIII collagen isoform 10 COL13A1 0.920 alpha 1 type XIII collagen isoform 18 COL13A1 0.918 alpha 1 type XIII collagen isoform 16 COL25A1 0.334 collagen, type XXV, alpha 1 isoform 1 COL25A1 0.314 collagen, type XXV, alpha 1 isoform 2 COL4A5 0.306 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.305 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.305 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.303 alpha 1 type V collagen preproprotein COL3A1 0.294 collagen type III alpha 1 preproprotein COL4A1 0.293 alpha 1 type IV collagen preproprotein COL5A3 0.291 collagen, type V, alpha 3 preproprotein COL11A1 0.288 alpha 1 type XI collagen isoform B preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
