Guide to the Human Genome
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Name: LOC100293557 Sequence: fasta or formatted (298aa) NCBI GI: 239753972
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          5           1
 C cysteine            0.3          1           1
 D aspartate           0.3          1           1
 E glutamate           1.0          3           2
 F phenylalanine       2.0          6           1
 G glycine             1.3          4           1
 H histidine          14.8         44           1
 I isoleucine          9.4         28           1
 K lysine              2.3          7           1
 L leucine             8.7         26           2
 M methionine          0.7          2           1
 N asparagine          1.3          4           1
 P proline            25.5         76           3
 Q glutamine           1.0          3           1
 R arginine            2.0          6           2
 S serine             13.1         39           2
 T threonine          10.7         32           1
 V valine              1.7          5           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288473          0.368   PREDICTED: hypothetical protein XP_002343336 
LOC100131525          0.347   PREDICTED: hypothetical protein 
LOC100291393          0.324   PREDICTED: hypothetical protein XP_002347924 
LOC100133439          0.297   PREDICTED: hypothetical protein 
LOC100133981          0.294   PREDICTED: hypothetical protein 
LOC100132614          0.267   PREDICTED: hypothetical protein, partial 
LOC100288786          0.258   PREDICTED: hypothetical protein XP_002343819 
SF3A2                 0.116   splicing factor 3a, subunit 2 
MUC2                  0.115   mucin 2 precursor 
LOC100134147          0.108   PREDICTED: hypothetical protein 
LOC100128719          0.107   PREDICTED: hypothetical protein, partial 
LOC100128719          0.107   PREDICTED: hypothetical protein, partial 
RERE                  0.090   atrophin-1 like protein isoform b 
RERE                  0.090   atrophin-1 like protein isoform a 
RERE                  0.090   atrophin-1 like protein isoform a 
LOC284297             0.082   hypothetical protein LOC284297 
RBM33                 0.079   RNA binding motif protein 33 
POLR2A                0.077   DNA-directed RNA polymerase II A 
MLL2                  0.074   myeloid/lymphoid or mixed-lineage leukemia 2 
IQSEC2                0.074   IQ motif and Sec7 domain 2 isoform1 
FLJ22184              0.072   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.072   PREDICTED: hypothetical protein LOC80164 
CCNK                  0.071   cyclin K isoform 1 
PRR21                 0.069   proline rich 21 
MLL5                  0.069   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.069   myeloid/lymphoid or mixed-lineage leukemia 5 
FAM65A                0.068   hypothetical protein LOC79567 
PTPN23                0.066   protein tyrosine phosphatase, non-receptor type 23 [...
WASF1                 0.064   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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