Guide to the Human Genome
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Name: LOC647546 Sequence: fasta or formatted (3859aa) NCBI GI: 169205253
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        338           2
 C cysteine            0.8         30           1
 D aspartate          12.0        464           3
 E glutamate           0.7         26           1
 F phenylalanine       1.6         61           1
 G glycine             4.2        163           2
 H histidine           0.1          3           1
 I isoleucine          3.3        128           2
 K lysine              0.3         10           2
 L leucine             3.7        142           2
 M methionine          0.1          4           1
 N asparagine          1.3         52           2
 P proline            21.5        829           3
 Q glutamine           0.1          3           1
 R arginine            0.3         12           1
 S serine              8.7        334           2
 T threonine           9.0        347           2
 V valine             23.3        899           3
 W tryptophan          0.1          3           1
 X unknown             0.2          7           7
 Y tyrosine            0.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MUC17                 0.085   mucin 17 
MUC2                  0.083   mucin 2 precursor 
MUC4                  0.040   mucin 4 isoform a 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
LOC727944             0.017   PREDICTED: similar to hCG2042412 
SRCAP                 0.016   Snf2-related CBP activator protein 
LOC729792             0.016   PREDICTED: hypothetical protein 
LOC100294136          0.016   PREDICTED: hypothetical protein 
LOC100294091          0.016   PREDICTED: hypothetical protein 
TTN                   0.016   titin isoform N2-A 
LOC100294249          0.016   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.016   PREDICTED: hypothetical protein 
LOC100294501          0.016   PREDICTED: hypothetical protein 
LOC100294238          0.016   PREDICTED: hypothetical protein 
LOC100294204          0.016   PREDICTED: hypothetical protein 
KIAA0754              0.014   hypothetical protein LOC643314 
PRG4                  0.014   proteoglycan 4 isoform D 
PRG4                  0.014   proteoglycan 4 isoform C 
PRG4                  0.014   proteoglycan 4 isoform B 
PRG4                  0.014   proteoglycan 4 isoform A 
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC730401             0.014   PREDICTED: hypothetical protein 
LOC100294420          0.013   PREDICTED: similar to mucin 2 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
MUC16                 0.013   mucin 16 
POLR2A                0.012   DNA-directed RNA polymerase II A 
ZAN                   0.012   zonadhesin isoform 3 
ZAN                   0.012   zonadhesin isoform 6 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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