| Name: COL13A1 | Sequence: fasta or formatted (695aa) | NCBI GI: 22027577 | |
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Description: alpha 1 type XIII collagen isoform 5
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.1 49 3 C cysteine 1.2 8 1 D aspartate 3.3 23 1 E glutamate 6.3 44 1 F phenylalanine 0.7 5 1 G glycine 26.3 183 3 H histidine 1.6 11 1 I isoleucine 2.6 18 2 K lysine 6.5 45 2 L leucine 6.9 48 2 M methionine 1.9 13 1 N asparagine 1.4 10 1 P proline 17.1 119 2 Q glutamine 4.0 28 2 R arginine 4.6 32 4 S serine 3.3 23 2 T threonine 2.3 16 1 V valine 2.2 15 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 5 COL13A1 0.991 alpha 1 type XIII collagen isoform 1 COL13A1 0.986 alpha 1 type XIII collagen isoform 20 COL13A1 0.971 alpha 1 type XIII collagen isoform 4 COL13A1 0.969 alpha 1 type XIII collagen isoform 10 COL13A1 0.968 alpha 1 type XIII collagen isoform 2 COL13A1 0.967 alpha 1 type XIII collagen isoform 8 COL13A1 0.963 alpha 1 type XIII collagen isoform 6 COL13A1 0.962 alpha 1 type XIII collagen isoform 7 COL13A1 0.959 alpha 1 type XIII collagen isoform 3 COL13A1 0.948 alpha 1 type XIII collagen isoform 15 COL13A1 0.947 alpha 1 type XIII collagen isoform 11 COL13A1 0.946 alpha 1 type XIII collagen isoform 14 COL13A1 0.939 alpha 1 type XIII collagen isoform 9 COL13A1 0.939 alpha 1 type XIII collagen isoform 13 COL13A1 0.938 alpha 1 type XIII collagen isoform 12 COL13A1 0.931 alpha 1 type XIII collagen isoform 17 COL13A1 0.926 alpha 1 type XIII collagen isoform 18 COL13A1 0.902 alpha 1 type XIII collagen isoform 16 COL13A1 0.843 alpha 1 type XIII collagen isoform 19 COL4A5 0.309 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.309 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.307 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.300 alpha 1 type V collagen preproprotein COL5A2 0.299 alpha 2 type V collagen preproprotein COL3A1 0.298 collagen type III alpha 1 preproprotein COL1A1 0.297 alpha 1 type I collagen preproprotein COL11A1 0.297 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.297 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.297 alpha 1 type XI collagen isoform A preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
