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Search of human proteins with 169171388
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 321 2e-88
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 321 2e-88
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 218 2e-57
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 54 5e-08
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 54 5e-08
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 54 5e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 50 8e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 50 8e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 2e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 2e-06
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 48 4e-06
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 47 6e-06
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-05
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 46 1e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 2e-05
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 2e-05
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 45 2e-05
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 45 2e-05
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 45 2e-05
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 45 2e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 45 3e-05
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 45 3e-05
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 45 3e-05
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 45 3e-05
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 45 3e-05
gi|119220564 one cut domain, family member 2 [Homo sapiens] 45 3e-05
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 45 3e-05
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 44 4e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 4e-05
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 321 bits (822), Expect = 2e-88
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MAHWGALSLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG 60
MAHWGALSLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG
Sbjct: 1 MAHWGALSLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG 60
Query: 61 AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGG 120
AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGG
Sbjct: 61 AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGG 120
Query: 121 EGGERGEESASERESERAPGRGPGARSSAGEPER 154
EGGERGEESASERESERAPGRGPGARSSAGEPER
Sbjct: 121 EGGERGEESASERESERAPGRGPGARSSAGEPER 154
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 321 bits (822), Expect = 2e-88
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MAHWGALSLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG 60
MAHWGALSLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG
Sbjct: 1 MAHWGALSLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG 60
Query: 61 AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGG 120
AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGG
Sbjct: 61 AEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGG 120
Query: 121 EGGERGEESASERESERAPGRGPGARSSAGEPER 154
EGGERGEESASERESERAPGRGPGARSSAGEPER
Sbjct: 121 EGGERGEESASERESERAPGRGPGARSSAGEPER 154
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 218 bits (555), Expect = 2e-57
Identities = 109/118 (92%), Positives = 111/118 (94%), Gaps = 1/118 (0%)
Query: 37 QPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF 96
QP A E + + KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF
Sbjct: 7 QPVLAAETLN-NHKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEF 65
Query: 97 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154
QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER
Sbjct: 66 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 53.9 bits (128), Expect = 5e-08
Identities = 46/143 (32%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQA-INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
G P PRGP P G G + +L P K + G G G G G G G
Sbjct: 1094 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE-----PGESGSPGIQGEPGVKGPRG 1148
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEES 129
E+ ESG+P P PK GD + + G +P P GEGG RG++
Sbjct: 1149 ERGEKGESGQP-----GEPGPPGPKGPTGDDGP-KGNPGPVGFPGDPGPPGEGGPRGQDG 1202
Query: 130 A-SERESERAPGRGPGARSSAGE 151
A +R + PG+ PG+ GE
Sbjct: 1203 AKGDRGEDGEPGQ-PGSPGPTGE 1224
Score = 43.5 bits (101), Expect = 7e-05
Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQA----INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAG 66
G+ P GP +G P SG++ + + P R G G GA G +G G
Sbjct: 1061 GFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPR-----GPAGPNGADGPQGPPG 1115
Query: 67 GAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGE 124
G G E G P G P Q EP K +G+ R + +G+ EP P G G
Sbjct: 1116 GVGNLGPPGEKGEP-GESGSPGIQGEPGVKGPRGE----RGEKGESGQPGEPGPPGPKGP 1170
Query: 125 RGEESASERESERAPGRGPGARSSAGEP 152
G++ P PG G+P
Sbjct: 1171 TGDDG---------PKGNPGPVGFPGDP 1189
Score = 42.4 bits (98), Expect = 2e-04
Identities = 47/160 (29%), Positives = 57/160 (35%), Gaps = 23/160 (14%)
Query: 12 GYPVPRGP-----FPEGTPRLSGKQAINDLQ----------PTSAKEDRDCDIKGGGGGG 56
GYP +GP FP G P SG++ L PT + R +G G
Sbjct: 716 GYPGRQGPKGSLGFP-GFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGP--RGATGKS 772
Query: 57 GAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA----RADALTAGK 112
GA G GG G G ER G P G P + P DG R + GK
Sbjct: 773 GAKGTSGGDGPHGPPGERGLPG-PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGK 831
Query: 113 SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
+ P P G G +G + ER PG G P
Sbjct: 832 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 871
Score = 41.6 bits (96), Expect = 3e-04
Identities = 44/149 (29%), Positives = 54/149 (36%), Gaps = 13/149 (8%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G+P RG P G P L G + + P A + G GG G G G G G
Sbjct: 899 GFPGERGLPGTAGGPGLKGNEGPSG-PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGA 957
Query: 71 ARERAESGR-----PCGRR--RHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
A E+ G P GR + P P P G A D G+ +P G G
Sbjct: 958 AGEKGVPGEKGPIGPTGRDGVQGPVGLPGPA---GPPGVAGEDG-DKGEVGDPGQKGTKG 1013
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
+GE P PGA + GEP
Sbjct: 1014 NKGEHGPPGPPGPIGPVGQPGAAGADGEP 1042
Score = 36.2 bits (82), Expect = 0.011
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 12 GYPVPRGPFPE-GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGG----GGAGGAEGGAG 66
GY GP + G+P L G+ DL P + + G G GA GA G G
Sbjct: 407 GYTGRPGPLGQPGSPGLKGESG--DLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPG 464
Query: 67 GAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
G +R G P P K +GD G P P GE GERG
Sbjct: 465 DPGVKGDRGFDGLP--------GLPGEKGHRGD----------TGAQGLPGPPGEDGERG 506
Query: 127 EE 128
++
Sbjct: 507 DD 508
Score = 35.8 bits (81), Expect = 0.015
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 11 DGYPVPRG-------PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEG 63
DG P+G P P G GK + L ++ + G G GA G +G
Sbjct: 682 DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSL-GFPGFPGASGEKG 740
Query: 64 GAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
G +G++ R E G P G P+ + P+ GA ++ A G S P G G
Sbjct: 741 ARGLSGKSGPRGERG-PTG----PRGQRGPR-----GATGKSGA--KGTSGGDGPHGPPG 788
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
ERG + P PG + G P
Sbjct: 789 ERG------LPGPQGPNGFPGPKGPPGPP 811
Score = 33.9 bits (76), Expect = 0.057
Identities = 43/174 (24%), Positives = 57/174 (32%), Gaps = 47/174 (27%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
GYP PRG + G I L+ ++ D G G G G +G G G
Sbjct: 629 GYPGPRG--------VKGVDGIRGLKGHKGEKGED----GFPGFKGDIGVKGDRGEVGVP 676
Query: 72 RERAESGR--PCGRRRHPQAEPAPKEFQGD----------------------------GA 101
R E G P GR P +P P G+ GA
Sbjct: 677 GSRGEDGPEGPKGRTG-PTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGA 735
Query: 102 A----ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
+ AR + +G E P G G+RG A+ + + G G GE
Sbjct: 736 SGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 789
Score = 33.1 bits (74), Expect = 0.097
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 37/166 (22%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP P G P +G D +P + KG G G G G G G
Sbjct: 1019 GPPGPPGPIGPVGQPGAAGA----DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGL 1074
Query: 71 ARERAESGR-----PCGRRRHPQAEPAPKEFQGDGAAARADALTAG--------KSAEP- 116
E G P G P P P+ G A G + EP
Sbjct: 1075 PGPSGEKGETGDVGPMG----PPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG 1130
Query: 117 ---APGGEG--------GERGEESASERESERAPGRGPGARSSAGE 151
+PG +G GERGE+ S + E P PG + G+
Sbjct: 1131 ESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGP---PGPKGPTGD 1173
Score = 31.6 bits (70), Expect = 0.28
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 6/134 (4%)
Query: 23 GTPRLSGKQAINDLQ--PTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG-R 79
G P + G + + L P D +G G G G G G G ESG R
Sbjct: 464 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPR 523
Query: 80 PCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEESASERESERA 138
+ P P P +G DG +L G EP P G+ G G + +
Sbjct: 524 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIG 581
Query: 139 PGRGPGARSSAGEP 152
P G + G P
Sbjct: 582 PHGEKGPQGKPGLP 595
Score = 31.6 bits (70), Expect = 0.28
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P GP P G G + L + ++ R G G G G G G
Sbjct: 1259 GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-------GATGQAGPPGPVGPPGL 1311
Query: 71 ARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEE 128
R ++G G + HP P QG+ G P P G G++GE
Sbjct: 1312 PGLRGDAGAK-GEKGHPGLIGLIGPPGEQGE----------KGDRGLPGPQGSPGQKGEM 1360
Query: 129 SASERESERAPGRGPGARSSAG 150
PG PG AG
Sbjct: 1361 GIPGASGPIGPGGPPGLPGPAG 1382
Score = 31.2 bits (69), Expect = 0.37
Identities = 42/164 (25%), Positives = 52/164 (31%), Gaps = 32/164 (19%)
Query: 11 DGYP-VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P P P P G G + E R +GG G G GA G G G
Sbjct: 1210 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR----QGGKGAKGDPGAIGAPGKTG 1265
Query: 70 RARERAESGRP-----------CGRRRHP----QAEPAPKEFQGDGAAARADALTAGKSA 114
+G+P G++ P QA P R DA G+
Sbjct: 1266 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKG 1325
Query: 115 EP------APGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P P GE GE+G+ P PG + G P
Sbjct: 1326 HPGLIGLIGPPGEQGEKGDRGLP------GPQGSPGQKGEMGIP 1363
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/142 (26%), Positives = 40/142 (28%), Gaps = 35/142 (24%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P GP P G P L G D KG G G G G G G
Sbjct: 1298 GQAGPPGPVGPPGLPGLRG----------------DAGAKGEKGHPGLIGLIGPPGEQGE 1341
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
+R G PQ P K G G S PGG G G
Sbjct: 1342 KGDRGLPG--------PQGSPGQKGEMG----------IPGASGPIGPGGPPGLPGPAGP 1383
Query: 131 SERESERAPGRGPGARSSAGEP 152
+ PG G + G P
Sbjct: 1384 KGAKGATGPGGPKGEKGVQGPP 1405
Score = 26.6 bits (57), Expect = 9.1
Identities = 38/163 (23%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 9 LSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEG----- 63
L G V P PEG L G I P + + G G G+ GA G
Sbjct: 305 LEPGMLVEGPPGPEGPAGLIGPPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTS 363
Query: 64 -------GAGGAGR-----ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA- 110
G+GG + A+E R + P P + G
Sbjct: 364 LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGL 423
Query: 111 -GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G+S + P G G +G + R GAR G+P
Sbjct: 424 KGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP 466
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 53.9 bits (128), Expect = 5e-08
Identities = 46/143 (32%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQA-INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
G P PRGP P G G + +L P K + G G G G G G G
Sbjct: 1073 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE-----PGESGSPGIQGEPGVKGPRG 1127
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEES 129
E+ ESG+P P PK GD + + G +P P GEGG RG++
Sbjct: 1128 ERGEKGESGQP-----GEPGPPGPKGPTGDDGP-KGNPGPVGFPGDPGPPGEGGPRGQDG 1181
Query: 130 A-SERESERAPGRGPGARSSAGE 151
A +R + PG+ PG+ GE
Sbjct: 1182 AKGDRGEDGEPGQ-PGSPGPTGE 1203
Score = 43.5 bits (101), Expect = 7e-05
Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQA----INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAG 66
G+ P GP +G P SG++ + + P R G G GA G +G G
Sbjct: 1040 GFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPR-----GPAGPNGADGPQGPPG 1094
Query: 67 GAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGE 124
G G E G P G P Q EP K +G+ R + +G+ EP P G G
Sbjct: 1095 GVGNLGPPGEKGEP-GESGSPGIQGEPGVKGPRGE----RGEKGESGQPGEPGPPGPKGP 1149
Query: 125 RGEESASERESERAPGRGPGARSSAGEP 152
G++ P PG G+P
Sbjct: 1150 TGDDG---------PKGNPGPVGFPGDP 1168
Score = 42.4 bits (98), Expect = 2e-04
Identities = 47/160 (29%), Positives = 57/160 (35%), Gaps = 23/160 (14%)
Query: 12 GYPVPRGP-----FPEGTPRLSGKQAINDLQ----------PTSAKEDRDCDIKGGGGGG 56
GYP +GP FP G P SG++ L PT + R +G G
Sbjct: 695 GYPGRQGPKGSLGFP-GFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGP--RGATGKS 751
Query: 57 GAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA----RADALTAGK 112
GA G GG G G ER G P G P + P DG R + GK
Sbjct: 752 GAKGTSGGDGPHGPPGERGLPG-PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGK 810
Query: 113 SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
+ P P G G +G + ER PG G P
Sbjct: 811 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 850
Score = 41.6 bits (96), Expect = 3e-04
Identities = 44/149 (29%), Positives = 54/149 (36%), Gaps = 13/149 (8%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G+P RG P G P L G + + P A + G GG G G G G G
Sbjct: 878 GFPGERGLPGTAGGPGLKGNEGPSG-PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGA 936
Query: 71 ARERAESGR-----PCGRR--RHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
A E+ G P GR + P P P G A D G+ +P G G
Sbjct: 937 AGEKGVPGEKGPIGPTGRDGVQGPVGLPGPA---GPPGVAGEDG-DKGEVGDPGQKGTKG 992
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
+GE P PGA + GEP
Sbjct: 993 NKGEHGPPGPPGPIGPVGQPGAAGADGEP 1021
Score = 36.2 bits (82), Expect = 0.011
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 12 GYPVPRGPFPE-GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGG----GGAGGAEGGAG 66
GY GP + G+P L G+ DL P + + G G GA GA G G
Sbjct: 386 GYTGRPGPLGQPGSPGLKGESG--DLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPG 443
Query: 67 GAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
G +R G P P K +GD G P P GE GERG
Sbjct: 444 DPGVKGDRGFDGLP--------GLPGEKGHRGD----------TGAQGLPGPPGEDGERG 485
Query: 127 EE 128
++
Sbjct: 486 DD 487
Score = 35.8 bits (81), Expect = 0.015
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 11 DGYPVPRG-------PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEG 63
DG P+G P P G GK + L ++ + G G GA G +G
Sbjct: 661 DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSL-GFPGFPGASGEKG 719
Query: 64 GAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
G +G++ R E G P G P+ + P+ GA ++ A G S P G G
Sbjct: 720 ARGLSGKSGPRGERG-PTG----PRGQRGPR-----GATGKSGA--KGTSGGDGPHGPPG 767
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
ERG + P PG + G P
Sbjct: 768 ERG------LPGPQGPNGFPGPKGPPGPP 790
Score = 33.9 bits (76), Expect = 0.057
Identities = 43/174 (24%), Positives = 57/174 (32%), Gaps = 47/174 (27%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
GYP PRG + G I L+ ++ D G G G G +G G G
Sbjct: 608 GYPGPRG--------VKGVDGIRGLKGHKGEKGED----GFPGFKGDIGVKGDRGEVGVP 655
Query: 72 RERAESGR--PCGRRRHPQAEPAPKEFQGD----------------------------GA 101
R E G P GR P +P P G+ GA
Sbjct: 656 GSRGEDGPEGPKGRTG-PTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGA 714
Query: 102 A----ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
+ AR + +G E P G G+RG A+ + + G G GE
Sbjct: 715 SGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 768
Score = 33.1 bits (74), Expect = 0.097
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 37/166 (22%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP P G P +G D +P + KG G G G G G G
Sbjct: 998 GPPGPPGPIGPVGQPGAAGA----DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGL 1053
Query: 71 ARERAESGR-----PCGRRRHPQAEPAPKEFQGDGAAARADALTAG--------KSAEP- 116
E G P G P P P+ G A G + EP
Sbjct: 1054 PGPSGEKGETGDVGPMG----PPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG 1109
Query: 117 ---APGGEG--------GERGEESASERESERAPGRGPGARSSAGE 151
+PG +G GERGE+ S + E P PG + G+
Sbjct: 1110 ESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGP---PGPKGPTGD 1152
Score = 31.6 bits (70), Expect = 0.28
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 6/134 (4%)
Query: 23 GTPRLSGKQAINDLQ--PTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG-R 79
G P + G + + L P D +G G G G G G G ESG R
Sbjct: 443 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPR 502
Query: 80 PCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEESASERESERA 138
+ P P P +G DG +L G EP P G+ G G + +
Sbjct: 503 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIG 560
Query: 139 PGRGPGARSSAGEP 152
P G + G P
Sbjct: 561 PHGEKGPQGKPGLP 574
Score = 31.6 bits (70), Expect = 0.28
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P GP P G G + L + ++ R G G G G G G
Sbjct: 1238 GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-------GATGQAGPPGPVGPPGL 1290
Query: 71 ARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEE 128
R ++G G + HP P QG+ G P P G G++GE
Sbjct: 1291 PGLRGDAGAK-GEKGHPGLIGLIGPPGEQGE----------KGDRGLPGPQGSPGQKGEM 1339
Query: 129 SASERESERAPGRGPGARSSAG 150
PG PG AG
Sbjct: 1340 GIPGASGPIGPGGPPGLPGPAG 1361
Score = 31.2 bits (69), Expect = 0.37
Identities = 42/164 (25%), Positives = 52/164 (31%), Gaps = 32/164 (19%)
Query: 11 DGYP-VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P P P P G G + E R +GG G G GA G G G
Sbjct: 1189 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR----QGGKGAKGDPGAIGAPGKTG 1244
Query: 70 RARERAESGRP-----------CGRRRHP----QAEPAPKEFQGDGAAARADALTAGKSA 114
+G+P G++ P QA P R DA G+
Sbjct: 1245 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKG 1304
Query: 115 EP------APGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P P GE GE+G+ P PG + G P
Sbjct: 1305 HPGLIGLIGPPGEQGEKGDRGLP------GPQGSPGQKGEMGIP 1342
Score = 30.4 bits (67), Expect = 0.63
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 69 GRARERAESGRPCGRRRHPQAEPA----PKEFQGDGAAARADALTAGKSAEPA------- 117
G RER ++ +P +R PQ +P+ P+ + AA G+ EPA
Sbjct: 230 GGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGML 289
Query: 118 ----PGGEG--------GERGEESASERESERAPGRGPGARSSAGEP 152
PG EG G +G ER P G S G P
Sbjct: 290 VEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGAP 336
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/142 (26%), Positives = 40/142 (28%), Gaps = 35/142 (24%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P GP P G P L G D KG G G G G G G
Sbjct: 1277 GQAGPPGPVGPPGLPGLRG----------------DAGAKGEKGHPGLIGLIGPPGEQGE 1320
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
+R G PQ P K G G S PGG G G
Sbjct: 1321 KGDRGLPG--------PQGSPGQKGEMG----------IPGASGPIGPGGPPGLPGPAGP 1362
Query: 131 SERESERAPGRGPGARSSAGEP 152
+ PG G + G P
Sbjct: 1363 KGAKGATGPGGPKGEKGVQGPP 1384
Score = 26.6 bits (57), Expect = 9.1
Identities = 38/163 (23%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 9 LSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEG----- 63
L G V P PEG L G I P + + G G G+ GA G
Sbjct: 284 LEPGMLVEGPPGPEGPAGLIGPPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTS 342
Query: 64 -------GAGGAGR-----ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA- 110
G+GG + A+E R + P P + G
Sbjct: 343 LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGL 402
Query: 111 -GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G+S + P G G +G + R GAR G+P
Sbjct: 403 KGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP 445
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 53.9 bits (128), Expect = 5e-08
Identities = 46/143 (32%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQA-INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
G P PRGP P G G + +L P K + G G G G G G G
Sbjct: 1180 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE-----PGESGSPGIQGEPGVKGPRG 1234
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEES 129
E+ ESG+P P PK GD + + G +P P GEGG RG++
Sbjct: 1235 ERGEKGESGQP-----GEPGPPGPKGPTGDDGP-KGNPGPVGFPGDPGPPGEGGPRGQDG 1288
Query: 130 A-SERESERAPGRGPGARSSAGE 151
A +R + PG+ PG+ GE
Sbjct: 1289 AKGDRGEDGEPGQ-PGSPGPTGE 1310
Score = 43.5 bits (101), Expect = 7e-05
Identities = 42/148 (28%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQA----INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAG 66
G+ P GP +G P SG++ + + P R G G GA G +G G
Sbjct: 1147 GFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPR-----GPAGPNGADGPQGPPG 1201
Query: 67 GAGRARERAESGRPCGRRRHP--QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGE 124
G G E G P G P Q EP K +G+ R + +G+ EP P G G
Sbjct: 1202 GVGNLGPPGEKGEP-GESGSPGIQGEPGVKGPRGE----RGEKGESGQPGEPGPPGPKGP 1256
Query: 125 RGEESASERESERAPGRGPGARSSAGEP 152
G++ P PG G+P
Sbjct: 1257 TGDDG---------PKGNPGPVGFPGDP 1275
Score = 42.4 bits (98), Expect = 2e-04
Identities = 47/160 (29%), Positives = 57/160 (35%), Gaps = 23/160 (14%)
Query: 12 GYPVPRGP-----FPEGTPRLSGKQAINDLQ----------PTSAKEDRDCDIKGGGGGG 56
GYP +GP FP G P SG++ L PT + R +G G
Sbjct: 802 GYPGRQGPKGSLGFP-GFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGP--RGATGKS 858
Query: 57 GAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA----RADALTAGK 112
GA G GG G G ER G P G P + P DG R + GK
Sbjct: 859 GAKGTSGGDGPHGPPGERGLPG-PQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGK 917
Query: 113 SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
+ P P G G +G + ER PG G P
Sbjct: 918 TGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLP 957
Score = 41.6 bits (96), Expect = 3e-04
Identities = 44/149 (29%), Positives = 54/149 (36%), Gaps = 13/149 (8%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G+P RG P G P L G + + P A + G GG G G G G G
Sbjct: 985 GFPGERGLPGTAGGPGLKGNEGPSG-PPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGA 1043
Query: 71 ARERAESGR-----PCGRR--RHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
A E+ G P GR + P P P G A D G+ +P G G
Sbjct: 1044 AGEKGVPGEKGPIGPTGRDGVQGPVGLPGPA---GPPGVAGEDG-DKGEVGDPGQKGTKG 1099
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
+GE P PGA + GEP
Sbjct: 1100 NKGEHGPPGPPGPIGPVGQPGAAGADGEP 1128
Score = 36.2 bits (82), Expect = 0.011
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 12 GYPVPRGPFPE-GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGG----GGAGGAEGGAG 66
GY GP + G+P L G+ DL P + + G G GA GA G G
Sbjct: 493 GYTGRPGPLGQPGSPGLKGESG--DLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPG 550
Query: 67 GAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
G +R G P P K +GD G P P GE GERG
Sbjct: 551 DPGVKGDRGFDGLP--------GLPGEKGHRGD----------TGAQGLPGPPGEDGERG 592
Query: 127 EE 128
++
Sbjct: 593 DD 594
Score = 35.8 bits (81), Expect = 0.015
Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 26/149 (17%)
Query: 11 DGYPVPRG-------PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEG 63
DG P+G P P G GK + L ++ + G G GA G +G
Sbjct: 768 DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSL-GFPGFPGASGEKG 826
Query: 64 GAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
G +G++ R E G P G P+ + P+ GA ++ A G S P G G
Sbjct: 827 ARGLSGKSGPRGERG-PTG----PRGQRGPR-----GATGKSGA--KGTSGGDGPHGPPG 874
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
ERG + P PG + G P
Sbjct: 875 ERG------LPGPQGPNGFPGPKGPPGPP 897
Score = 33.9 bits (76), Expect = 0.057
Identities = 43/174 (24%), Positives = 57/174 (32%), Gaps = 47/174 (27%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
GYP PRG + G I L+ ++ D G G G G +G G G
Sbjct: 715 GYPGPRG--------VKGVDGIRGLKGHKGEKGED----GFPGFKGDIGVKGDRGEVGVP 762
Query: 72 RERAESGR--PCGRRRHPQAEPAPKEFQGD----------------------------GA 101
R E G P GR P +P P G+ GA
Sbjct: 763 GSRGEDGPEGPKGRTG-PTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGA 821
Query: 102 A----ARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
+ AR + +G E P G G+RG A+ + + G G GE
Sbjct: 822 SGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGE 875
Score = 33.1 bits (74), Expect = 0.097
Identities = 45/166 (27%), Positives = 56/166 (33%), Gaps = 37/166 (22%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP P G P +G D +P + KG G G G G G G
Sbjct: 1105 GPPGPPGPIGPVGQPGAAGA----DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGL 1160
Query: 71 ARERAESGR-----PCGRRRHPQAEPAPKEFQGDGAAARADALTAG--------KSAEP- 116
E G P G P P P+ G A G + EP
Sbjct: 1161 PGPSGEKGETGDVGPMG----PPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG 1216
Query: 117 ---APGGEG--------GERGEESASERESERAPGRGPGARSSAGE 151
+PG +G GERGE+ S + E P PG + G+
Sbjct: 1217 ESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGP---PGPKGPTGD 1259
Score = 31.6 bits (70), Expect = 0.28
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 6/134 (4%)
Query: 23 GTPRLSGKQAINDLQ--PTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG-R 79
G P + G + + L P D +G G G G G G G ESG R
Sbjct: 550 GDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPR 609
Query: 80 PCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEESASERESERA 138
+ P P P +G DG +L G EP P G+ G G + +
Sbjct: 610 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPGTQGLPGPQGAIG 667
Query: 139 PGRGPGARSSAGEP 152
P G + G P
Sbjct: 668 PHGEKGPQGKPGLP 681
Score = 31.6 bits (70), Expect = 0.28
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P GP P G G + L + ++ R G G G G G G
Sbjct: 1345 GAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP-------GATGQAGPPGPVGPPGL 1397
Query: 71 ARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEE 128
R ++G G + HP P QG+ G P P G G++GE
Sbjct: 1398 PGLRGDAGAK-GEKGHPGLIGLIGPPGEQGE----------KGDRGLPGPQGSPGQKGEM 1446
Query: 129 SASERESERAPGRGPGARSSAG 150
PG PG AG
Sbjct: 1447 GIPGASGPIGPGGPPGLPGPAG 1468
Score = 31.2 bits (69), Expect = 0.37
Identities = 42/164 (25%), Positives = 52/164 (31%), Gaps = 32/164 (19%)
Query: 11 DGYP-VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P P P P G G + E R +GG G G GA G G G
Sbjct: 1296 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR----QGGKGAKGDPGAIGAPGKTG 1351
Query: 70 RARERAESGRP-----------CGRRRHP----QAEPAPKEFQGDGAAARADALTAGKSA 114
+G+P G++ P QA P R DA G+
Sbjct: 1352 PVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKG 1411
Query: 115 EP------APGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P P GE GE+G+ P PG + G P
Sbjct: 1412 HPGLIGLIGPPGEQGEKGDRGLP------GPQGSPGQKGEMGIP 1449
Score = 29.6 bits (65), Expect = 1.1
Identities = 37/142 (26%), Positives = 40/142 (28%), Gaps = 35/142 (24%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P GP P G P L G D KG G G G G G G
Sbjct: 1384 GQAGPPGPVGPPGLPGLRG----------------DAGAKGEKGHPGLIGLIGPPGEQGE 1427
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
+R G PQ P K G G S PGG G G
Sbjct: 1428 KGDRGLPG--------PQGSPGQKGEMG----------IPGASGPIGPGGPPGLPGPAGP 1469
Query: 131 SERESERAPGRGPGARSSAGEP 152
+ PG G + G P
Sbjct: 1470 KGAKGATGPGGPKGEKGVQGPP 1491
Score = 26.6 bits (57), Expect = 9.1
Identities = 38/163 (23%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 9 LSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEG----- 63
L G V P PEG L G I P + + G G G+ GA G
Sbjct: 391 LEPGMLVEGPPGPEGPAGLIGPPGIQG-NPGPVGDPGERGPPGRAGLPGSDGAPGPPGTS 449
Query: 64 -------GAGGAGR-----ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA- 110
G+GG + A+E R + P P + G
Sbjct: 450 LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGL 509
Query: 111 -GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G+S + P G G +G + R GAR G+P
Sbjct: 510 KGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDP 552
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 50.1 bits (118), Expect = 8e-07
Identities = 47/145 (32%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 16 PRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
PRGP P G P G Q N +P +G G G G +G AG G+A ER
Sbjct: 208 PRGPPGPAGAPGPQGFQG-NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 266
Query: 75 AESGRPCGRRRHPQAE--PAPKEFQG----DGAAARADAL-TAGKSAEPAPGGEGGERGE 127
G P G R P P K +G DGA A A G+S P G G G
Sbjct: 267 GPPG-PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 128 ESASERESERAPGRGPGARSSAGEP 152
P GAR + G+P
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQP 350
Score = 48.1 bits (113), Expect = 3e-06
Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 27/147 (18%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G P P+GP G P G + KG G G GA G G AGR
Sbjct: 861 GAPGPQGP--SGAPGPQGPTGVTGP-------------KGARGAQGPPGATGFPGAAGRV 905
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEP------APGGEGGER 125
+G P P P P G AR D+ G++ EP P GE GE
Sbjct: 906 GPPGSNGNP-----GPPGPPGPSGKDGP-KGARGDSGPPGRAGEPGLQGPAGPPGEKGEP 959
Query: 126 GEESASERESERAPGRGPGARSSAGEP 152
G++ S E P G R G P
Sbjct: 960 GDDGPSGAEGPPGPQGLAGQRGIVGLP 986
Score = 45.8 bits (107), Expect = 1e-05
Identities = 42/138 (30%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Query: 19 PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG 78
P P G P SGK P A+ D G G G G +G AG G E + G
Sbjct: 914 PGPPGPPGPSGKDG-----PKGARGD-----SGPPGRAGEPGLQGPAGPPGEKGEPGDDG 963
Query: 79 RPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPAPGGEGGERGEESASERESE 136
P G + P P+ G G P P GE G++G AS
Sbjct: 964 -PSGA----EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGP 1018
Query: 137 RAPGRGPGARSSAGEPER 154
P PG AGEP R
Sbjct: 1019 PGPVGPPGLTGPAGEPGR 1036
Score = 43.9 bits (102), Expect = 5e-05
Identities = 43/146 (29%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 12 GYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGA--GGA 68
G P P GP P G P L G A GG AGGA+ G G
Sbjct: 159 GNPGPPGPPGPPGPPGLGGNFAAQ---------------MAGGFDEKAGGAQLGVMQGPM 203
Query: 69 GRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPAPGGEGGERG 126
G R G P P P+ FQG+ ++ G P P G+ G+ G
Sbjct: 204 GPMGPRGPPG--------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDG 255
Query: 127 EESASERESERAPGRGPGARSSAGEP 152
E + ER P GAR G P
Sbjct: 256 EAGKPGKAGERGPPGPQGARGFPGTP 281
Score = 42.0 bits (97), Expect = 2e-04
Identities = 44/161 (27%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 11 DGYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P+G P G L+G + N P E +G G G G +G G +G
Sbjct: 521 DGLAGPKGAPGERGPSGLAGPKGANG-DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSG 579
Query: 70 RARERAESGRPC--GRRRHP--QAEPAPKEFQGDGAAARADALTA--------------G 111
E G P G R P P PK G+ A L G
Sbjct: 580 APGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG 639
Query: 112 KSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
+ P P G GERGE+ A + PG G+P
Sbjct: 640 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP 680
Score = 42.0 bits (97), Expect = 2e-04
Identities = 43/144 (29%), Positives = 49/144 (34%), Gaps = 17/144 (11%)
Query: 16 PRG----PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
PRG P G+P G Q L T + KG G G GA+G G G
Sbjct: 697 PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP----KGASGPAGPPGAQGPPGLQGMP 752
Query: 72 RERAESG--RPCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEE 128
ER +G P G R E P+ G DG G P P G GE+GE
Sbjct: 753 GERGAAGIAGPKGDRGDV-GEKGPEGAPGKDGGRG-----LTGPIGPPGPAGANGEKGEV 806
Query: 129 SASERESERAPGRGPGARSSAGEP 152
PG R G P
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPP 830
Score = 41.2 bits (95), Expect = 4e-04
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 28/168 (16%)
Query: 11 DGYPVPRGPFPEGTPRLSGKQAI--------NDLQPTSAKEDRDCDIKGGGGGGGAGGAE 62
+G P P GP G P G+ ND QP A GG G GA GA+
Sbjct: 317 NGSPGPMGP--RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK 374
Query: 63 GGAGGAG-RARERAESGR----------PCGRRRHPQAEPAPKEFQGDGAAARADAL--- 108
G AG G R E A+ R P G +P + P GA A A
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434
Query: 109 ----TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G P G G+ GE + + E+ P PG G P
Sbjct: 435 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 482
Score = 40.0 bits (92), Expect = 8e-04
Identities = 43/147 (29%), Positives = 54/147 (36%), Gaps = 46/147 (31%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G+P P+G G P +G++ + ++G G G GA G G AG A
Sbjct: 603 GFPGPKGA--NGEPGKAGEKGLPGAP----------GLRGLPGKDGETGAAGPPGPAGPA 650
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 131
ER E G P P FQG P P GEGG+ G++
Sbjct: 651 GERGEQGAP-----------GPSGFQG-------------LPGPPGPPGEGGKPGDQGVP 686
Query: 132 ERESERAPG----RG----PGARSSAG 150
APG RG PG R S G
Sbjct: 687 GEAG--APGLVGPRGERGFPGERGSPG 711
Score = 37.4 bits (85), Expect = 0.005
Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 9/142 (6%)
Query: 11 DGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
+G PRG GTP G + T D KG G G GA G G G
Sbjct: 386 EGAQGPRGE--PGTPGSPGPAGASGNPGT----DGIPGAKGSAGAPGIAGAPGFPGPRGP 439
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
+ +G P G + EP F+G+ + + AG P P GE G+RG
Sbjct: 440 PGPQGATG-PLGPKGQT-GEPGIAGFKGE-QGPKGEPGPAGPQGAPGPAGEEGKRGARGE 496
Query: 131 SERESERAPGRGPGARSSAGEP 152
P GA + G P
Sbjct: 497 PGGVGPIGPPGERGAPGNRGFP 518
Score = 37.0 bits (84), Expect = 0.007
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 21/153 (13%)
Query: 10 SDGYPVPRGPFPE----GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGA 65
++G P P+G + G P G++ L S + G G GA G G
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP-------GKQGAPGASGDRGPP 1019
Query: 66 GGAGRARERAESGRPCGRRRHPQAEPAP--------KEFQGDGAAARADALTAGKSAEPA 117
G G +G P GR P A+ P K +G+ A A G P
Sbjct: 1020 GPVGPPGLTGPAGEP-GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG-APGPPGSPG 1077
Query: 118 PGGEGGERGEESASERESERAPGRGPGARSSAG 150
P G G++G+ + + P GAR G
Sbjct: 1078 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG 1110
Score = 35.8 bits (81), Expect = 0.015
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G GG G G G G AG E+ E G P G A AP E G A
Sbjct: 780 GKDGGRGLTGPIGPPGPAGANGEKGEVGPP-GPAGSAGARGAPGERGETGPPG-----PA 833
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G + P G+ G +GE+ + ++ + PG + +G P
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQKGDAG---APGPQGPSGAP 872
Score = 35.4 bits (80), Expect = 0.019
Identities = 41/143 (28%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDR-DCDIKGGGGGGGAGGAEGGAGGAG 69
G P G P EG+P G + K DR + G G G G+ G AG G
Sbjct: 1026 GLTGPAGEPGREGSPGADGPPGRDGA--AGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG 1083
Query: 70 RARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
+ +R E+G P G P + QG R D G++ EP G G RG
Sbjct: 1084 KQGDRGEAGAQGPMG----PSGPAGARGIQGP-QGPRGDK---GEAGEPGERGLKGHRGF 1135
Query: 128 ESASERESERAPGRGPGARSSAG 150
P GA AG
Sbjct: 1136 TGLQGLPGPPGPSGDQGASGPAG 1158
Score = 34.7 bits (78), Expect = 0.033
Identities = 37/142 (26%), Positives = 46/142 (32%), Gaps = 9/142 (6%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDL--QPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGA 68
G P P G P +G P SG + P + +G G G G +G AG
Sbjct: 996 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVK 1055
Query: 69 GRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEE 128
G E G P P P P G + D AG P G G RG +
Sbjct: 1056 GDRGETGAVGAPGAPG--PPGSPGPAGPTGK----QGDRGEAGAQGPMGPSGPAGARGIQ 1109
Query: 129 SASERESERAPGRGPGARSSAG 150
++ PG R G
Sbjct: 1110 GPQGPRGDKGEAGEPGERGLKG 1131
Score = 34.3 bits (77), Expect = 0.043
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
+G G G G G G AG E+ G P PQ P P +G AR +
Sbjct: 443 QGATGPLGPKGQTGEPGIAGFKGEQGPKGEP--GPAGPQGAPGPAGEEGK-RGARGEPGG 499
Query: 110 AGKSAEP----APGGEG--GERGEESASERESERAPGRGPGARSSAGEPER 154
G P APG G G+ G ER P G + + G+P R
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 550
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 90 EPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSA 149
+P PK +G+ + G P P G GE+G + E+ PG R
Sbjct: 99 QPGPKGQKGEPGDIKD---IVGPKGPPGPQGPAGEQGPRGDRGDKGEKG---APGPRGRD 152
Query: 150 GEP 152
GEP
Sbjct: 153 GEP 155
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 50.1 bits (118), Expect = 8e-07
Identities = 47/145 (32%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 16 PRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
PRGP P G P G Q N +P +G G G G +G AG G+A ER
Sbjct: 139 PRGPPGPAGAPGPQGFQG-NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGER 197
Query: 75 AESGRPCGRRRHPQAE--PAPKEFQG----DGAAARADAL-TAGKSAEPAPGGEGGERGE 127
G P G R P P K +G DGA A A G+S P G G G
Sbjct: 198 GPPG-PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 256
Query: 128 ESASERESERAPGRGPGARSSAGEP 152
P GAR + G+P
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQP 281
Score = 48.1 bits (113), Expect = 3e-06
Identities = 44/147 (29%), Positives = 52/147 (35%), Gaps = 27/147 (18%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G P P+GP G P G + KG G G GA G G AGR
Sbjct: 792 GAPGPQGP--SGAPGPQGPTGVTGP-------------KGARGAQGPPGATGFPGAAGRV 836
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEP------APGGEGGER 125
+G P P P P G AR D+ G++ EP P GE GE
Sbjct: 837 GPPGSNGNP-----GPPGPPGPSGKDGP-KGARGDSGPPGRAGEPGLQGPAGPPGEKGEP 890
Query: 126 GEESASERESERAPGRGPGARSSAGEP 152
G++ S E P G R G P
Sbjct: 891 GDDGPSGAEGPPGPQGLAGQRGIVGLP 917
Score = 45.8 bits (107), Expect = 1e-05
Identities = 42/138 (30%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Query: 19 PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG 78
P P G P SGK P A+ D G G G G +G AG G E + G
Sbjct: 845 PGPPGPPGPSGKDG-----PKGARGD-----SGPPGRAGEPGLQGPAGPPGEKGEPGDDG 894
Query: 79 RPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPAPGGEGGERGEESASERESE 136
P G + P P+ G G P P GE G++G AS
Sbjct: 895 -PSGA----EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGP 949
Query: 137 RAPGRGPGARSSAGEPER 154
P PG AGEP R
Sbjct: 950 PGPVGPPGLTGPAGEPGR 967
Score = 43.9 bits (102), Expect = 5e-05
Identities = 43/146 (29%), Positives = 51/146 (34%), Gaps = 28/146 (19%)
Query: 12 GYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGA--GGA 68
G P P GP P G P L G A GG AGGA+ G G
Sbjct: 90 GNPGPPGPPGPPGPPGLGGNFAAQ---------------MAGGFDEKAGGAQLGVMQGPM 134
Query: 69 GRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPAPGGEGGERG 126
G R G P P P+ FQG+ ++ G P P G+ G+ G
Sbjct: 135 GPMGPRGPPG--------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDG 186
Query: 127 EESASERESERAPGRGPGARSSAGEP 152
E + ER P GAR G P
Sbjct: 187 EAGKPGKAGERGPPGPQGARGFPGTP 212
Score = 42.0 bits (97), Expect = 2e-04
Identities = 44/161 (27%), Positives = 55/161 (34%), Gaps = 20/161 (12%)
Query: 11 DGYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P+G P G L+G + N P E +G G G G +G G +G
Sbjct: 452 DGLAGPKGAPGERGPSGLAGPKGANG-DPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSG 510
Query: 70 RARERAESGRPC--GRRRHP--QAEPAPKEFQGDGAAARADALTA--------------G 111
E G P G R P P PK G+ A L G
Sbjct: 511 APGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETG 570
Query: 112 KSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
+ P P G GERGE+ A + PG G+P
Sbjct: 571 AAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP 611
Score = 42.0 bits (97), Expect = 2e-04
Identities = 43/144 (29%), Positives = 49/144 (34%), Gaps = 17/144 (11%)
Query: 16 PRG----PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
PRG P G+P G Q L T + KG G G GA+G G G
Sbjct: 628 PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP----KGASGPAGPPGAQGPPGLQGMP 683
Query: 72 RERAESG--RPCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEE 128
ER +G P G R E P+ G DG G P P G GE+GE
Sbjct: 684 GERGAAGIAGPKGDRGDV-GEKGPEGAPGKDGGRG-----LTGPIGPPGPAGANGEKGEV 737
Query: 129 SASERESERAPGRGPGARSSAGEP 152
PG R G P
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPP 761
Score = 41.2 bits (95), Expect = 4e-04
Identities = 48/168 (28%), Positives = 58/168 (34%), Gaps = 28/168 (16%)
Query: 11 DGYPVPRGPFPEGTPRLSGKQAI--------NDLQPTSAKEDRDCDIKGGGGGGGAGGAE 62
+G P P GP G P G+ ND QP A GG G GA GA+
Sbjct: 248 NGSPGPMGP--RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAK 305
Query: 63 GGAGGAG-RARERAESGR----------PCGRRRHPQAEPAPKEFQGDGAAARADAL--- 108
G AG G R E A+ R P G +P + P GA A A
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365
Query: 109 ----TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G P G G+ GE + + E+ P PG G P
Sbjct: 366 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAP 413
Score = 40.0 bits (92), Expect = 8e-04
Identities = 43/147 (29%), Positives = 54/147 (36%), Gaps = 46/147 (31%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G+P P+G G P +G++ + ++G G G GA G G AG A
Sbjct: 534 GFPGPKGA--NGEPGKAGEKGLPGAP----------GLRGLPGKDGETGAAGPPGPAGPA 581
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 131
ER E G P P FQG P P GEGG+ G++
Sbjct: 582 GERGEQGAP-----------GPSGFQG-------------LPGPPGPPGEGGKPGDQGVP 617
Query: 132 ERESERAPG----RG----PGARSSAG 150
APG RG PG R S G
Sbjct: 618 GEAG--APGLVGPRGERGFPGERGSPG 642
Score = 37.4 bits (85), Expect = 0.005
Identities = 40/142 (28%), Positives = 51/142 (35%), Gaps = 9/142 (6%)
Query: 11 DGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
+G PRG GTP G + T D KG G G GA G G G
Sbjct: 317 EGAQGPRGE--PGTPGSPGPAGASGNPGT----DGIPGAKGSAGAPGIAGAPGFPGPRGP 370
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
+ +G P G + EP F+G+ + + AG P P GE G+RG
Sbjct: 371 PGPQGATG-PLGPKGQT-GEPGIAGFKGE-QGPKGEPGPAGPQGAPGPAGEEGKRGARGE 427
Query: 131 SERESERAPGRGPGARSSAGEP 152
P GA + G P
Sbjct: 428 PGGVGPIGPPGERGAPGNRGFP 449
Score = 37.0 bits (84), Expect = 0.007
Identities = 39/153 (25%), Positives = 55/153 (35%), Gaps = 21/153 (13%)
Query: 10 SDGYPVPRGPFPE----GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGA 65
++G P P+G + G P G++ L S + G G GA G G
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEP-------GKQGAPGASGDRGPP 950
Query: 66 GGAGRARERAESGRPCGRRRHPQAEPAP--------KEFQGDGAAARADALTAGKSAEPA 117
G G +G P GR P A+ P K +G+ A A G P
Sbjct: 951 GPVGPPGLTGPAGEP-GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPG-APGPPGSPG 1008
Query: 118 PGGEGGERGEESASERESERAPGRGPGARSSAG 150
P G G++G+ + + P GAR G
Sbjct: 1009 PAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQG 1041
Score = 35.8 bits (81), Expect = 0.015
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G GG G G G G AG E+ E G P G A AP E G A
Sbjct: 711 GKDGGRGLTGPIGPPGPAGANGEKGEVGPP-GPAGSAGARGAPGERGETGPPG-----PA 764
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G + P G+ G +GE+ + ++ + PG + +G P
Sbjct: 765 GFAGPPGADGQPGAKGEQGEAGQKGDAG---APGPQGPSGAP 803
Score = 35.4 bits (80), Expect = 0.019
Identities = 41/143 (28%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDR-DCDIKGGGGGGGAGGAEGGAGGAG 69
G P G P EG+P G + K DR + G G G G+ G AG G
Sbjct: 957 GLTGPAGEPGREGSPGADGPPGRDGA--AGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG 1014
Query: 70 RARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
+ +R E+G P G P + QG R D G++ EP G G RG
Sbjct: 1015 KQGDRGEAGAQGPMG----PSGPAGARGIQGP-QGPRGDK---GEAGEPGERGLKGHRGF 1066
Query: 128 ESASERESERAPGRGPGARSSAG 150
P GA AG
Sbjct: 1067 TGLQGLPGPPGPSGDQGASGPAG 1089
Score = 34.7 bits (78), Expect = 0.033
Identities = 37/142 (26%), Positives = 46/142 (32%), Gaps = 9/142 (6%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDL--QPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGA 68
G P P G P +G P SG + P + +G G G G +G AG
Sbjct: 927 GLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVK 986
Query: 69 GRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEE 128
G E G P P P P G + D AG P G G RG +
Sbjct: 987 GDRGETGAVGAPGAPG--PPGSPGPAGPTGK----QGDRGEAGAQGPMGPSGPAGARGIQ 1040
Query: 129 SASERESERAPGRGPGARSSAG 150
++ PG R G
Sbjct: 1041 GPQGPRGDKGEAGEPGERGLKG 1062
Score = 34.3 bits (77), Expect = 0.043
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
+G G G G G G AG E+ G P PQ P P +G AR +
Sbjct: 374 QGATGPLGPKGQTGEPGIAGFKGEQGPKGEP--GPAGPQGAPGPAGEEGK-RGARGEPGG 430
Query: 110 AGKSAEP----APGGEG--GERGEESASERESERAPGRGPGARSSAGEPER 154
G P APG G G+ G ER P G + + G+P R
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR 481
Score = 28.5 bits (62), Expect = 2.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 90 EPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSA 149
+P PK +G+ + G P P G GE+G + E+ PG R
Sbjct: 30 QPGPKGQKGEPGDIKD---IVGPKGPPGPQGPAGEQGPRGDRGDKGEKG---APGPRGRD 83
Query: 150 GEP 152
GEP
Sbjct: 84 GEP 86
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 2e-06
Identities = 50/166 (30%), Positives = 58/166 (34%), Gaps = 33/166 (19%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQP---------------TSAKEDRDCDIKGGGGG 55
G P PRG P P+G SGK N L T+ + RD G G
Sbjct: 963 GMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRD----GNPGS 1018
Query: 56 GGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDG-----------AAAR 104
G G +G GG G E G P G HP P P G A A
Sbjct: 1019 DGLPGRDGSPGGKGDRGENGSPGAP-GAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Query: 105 ADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 150
A + G P G+ GE GE A+ + R PGA S G
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Score = 47.4 bits (111), Expect = 5e-06
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 54 GGGGAGGAEGGAGGAGRARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARADALT 109
GG G G EGG G AG +G P R P PK +G+ AD +
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 110 A--------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G P P G+ G++GE A P PG R G P
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPP 806
Score = 45.1 bits (105), Expect = 2e-05
Identities = 46/150 (30%), Positives = 55/150 (36%), Gaps = 28/150 (18%)
Query: 10 SDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
S+G P P GP G+P G G G GA G+ G +G G
Sbjct: 886 SNGNPGPPGP--SGSPGKDGPP-------------------GPAGNTGAPGSPGVSGPKG 924
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADAL-TAGKSAEPAPGGEGGERGE 127
A + E G P + P P P G GA A G P P G GE G+
Sbjct: 925 DAGQPGEKGSPGAQG--PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK 982
Query: 128 ESASERESERAPGRG---PGARSSAGEPER 154
A+ ER P PG +AGEP R
Sbjct: 983 PGANGLSGERGPPGPQGLPGLAGTAGEPGR 1012
Score = 42.7 bits (99), Expect = 1e-04
Identities = 47/168 (27%), Positives = 60/168 (35%), Gaps = 25/168 (14%)
Query: 10 SDGYPVPRG-PFPEGTPRLSGKQAINDLQ--PTSAKEDRDCDIKGGGGGGGAGGAEGGAG 66
S+G P RG P P+G G + P E I G G GA G G AG
Sbjct: 361 SNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAG 420
Query: 67 GAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGA-----AARADALTAGKSAEPAPGGE 121
G R +G P + + EP P+ +G+ A+ + G EP G
Sbjct: 421 ANGAPGLRGGAGEP--GKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGL 478
Query: 122 GGERGEESASERESERAPG-----RGP----------GARSSAGEPER 154
G GE A P +GP G R +AGEP R
Sbjct: 479 PGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGR 526
Score = 42.7 bits (99), Expect = 1e-04
Identities = 46/149 (30%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 16 PRGPFPEGTPRLSGKQA----INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
P GP +G P G + I P D+ G GGA G G AG G
Sbjct: 746 PGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK--------GEGGAPGLPGIAGPRGSP 797
Query: 72 RERAESGRPCGRRRHPQA-----EPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
ER E+G P G P A EP K +G + + G + P G G G
Sbjct: 798 GERGETGPP-GPAGFPGAPGQNGEPGGKGERG-APGEKGEGGPPGVAGPPGGSGPAGPPG 855
Query: 127 EESA-SERESERAPGRG--PGARSSAGEP 152
+ ER S PG PGAR G P
Sbjct: 856 PQGVKGERGSPGGPGAAGFPGARGLPGPP 884
Score = 41.6 bits (96), Expect = 3e-04
Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 18/147 (12%)
Query: 16 PRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERA 75
P P G P +G++ + + I G G G GA G AG G A E
Sbjct: 470 PGEPGANGLPGAAGERGAPGFRGPAGPNG----IPGEKGPAGERGAPGPAGPRGAAGEPG 525
Query: 76 ESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL-TAGKSAEPAPGGEGGERGEESA---- 130
G P G P P G G+ + + G+S P P G G RG+
Sbjct: 526 RDGVPGG----PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP 581
Query: 131 SERESERAPGR-----GPGARSSAGEP 152
+ ++ APG+ GPG G P
Sbjct: 582 GPKGNDGAPGKNGERGGPGGPGPQGPP 608
Score = 41.6 bits (96), Expect = 3e-04
Identities = 40/147 (27%), Positives = 49/147 (33%), Gaps = 17/147 (11%)
Query: 10 SDGYPVPRGPFPE----GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGA 65
SDG P P G E G P SG + + + D G G G G GG
Sbjct: 547 SDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGND----GAPGKNGERGGPGGP 602
Query: 66 GGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGER 125
G G + E+G PQ P P GD G P GG GE
Sbjct: 603 GPQGPPGKNGETG--------PQGPPGPTGPGGDKGDTGPPG-PQGLQGLPGTGGPPGEN 653
Query: 126 GEESASERESERAPGRGPGARSSAGEP 152
G+ + + PG + AG P
Sbjct: 654 GKPGEPGPKGDAGAPGAPGGKGDAGAP 680
Score = 40.8 bits (94), Expect = 5e-04
Identities = 39/140 (27%), Positives = 50/140 (35%), Gaps = 19/140 (13%)
Query: 16 PRGPFPEGTPRLSGKQAINDLQ-PTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
P GP P+G P +G+ PT D+ G G G +G G G
Sbjct: 599 PGGPGPQGPPGKNGETGPQGPPGPTGPGGDK--------GDTGPPGPQGLQGLPGTGGPP 650
Query: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAA--ARADALTAGKSAEPAPGGEGGERGEESASE 132
E+G+P EP PK G A + DA G+ P G G RG
Sbjct: 651 GENGKP--------GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPG 702
Query: 133 RESERAPGRGPGARSSAGEP 152
E + PG +AG P
Sbjct: 703 PEGGKGAAGPPGPPGAAGTP 722
Score = 40.8 bits (94), Expect = 5e-04
Identities = 49/174 (28%), Positives = 65/174 (37%), Gaps = 32/174 (18%)
Query: 10 SDGYPVPRGP-FPEGTPRLSGK--QAINDLQPTS-----------AKEDR-DCDIKGGGG 54
++G RGP P+G P L+G + D P S K DR + G G
Sbjct: 985 ANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPG 1044
Query: 55 GGGAGGAEGGAGGAGRARERAESGRPCGRRRHP-----QAEPAPKEFQGD-------GAA 102
G G G G AG++ +R ESG P G P + P P+ +GD GAA
Sbjct: 1045 APGHPGPPGPVGPAGKSGDRGESG-PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAA 1103
Query: 103 A----RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
R G P P G+ G G + P PG ++G P
Sbjct: 1104 GIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHP 1157
Score = 40.4 bits (93), Expect = 6e-04
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 22/147 (14%)
Query: 16 PRGPFPEGTPRLSGKQAINDLQPTSAK----EDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
P P G+P G I + PT + + D+K G GG G G AG G
Sbjct: 123 PGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPP 182
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAP------GGEGGER 125
SG P P +QG + AG S P P G G+
Sbjct: 183 GPPGTSGHP--------GSPGSPGYQGPPG----EPGQAGPSGPPGPPGAIGPSGPAGKD 230
Query: 126 GEESASERESERAPGRGPGARSSAGEP 152
GE R ER PG + AG P
Sbjct: 231 GESGRPGRPGERGLPGPPGIKGPAGIP 257
Score = 40.0 bits (92), Expect = 8e-04
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 49 IKGGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHPQAEPAPKEFQGDGAAARAD 106
IKG G G G +G G GR E+ E+G P G P AP GA
Sbjct: 250 IKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAP---- 305
Query: 107 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G+ P G G RG + A + + P PG G P
Sbjct: 306 ----GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSP 347
Score = 39.7 bits (91), Expect = 0.001
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 30/160 (18%)
Query: 11 DGYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P P G G+P +SG + + QP KG G G GA G G AG
Sbjct: 902 DGPPGPAGNTGAPGSPGVSGPKG-DAGQPGE---------KGSPGAQGPPGAPGPLGIAG 951
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT--------------AGKSAE 115
R +G P P+ P P+ +G+ A+ L+ AG + E
Sbjct: 952 ITGARGLAGPP--GMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGE 1009
Query: 116 PAPGGEGGERG---EESASERESERAPGRGPGARSSAGEP 152
P G G G + + + +R PGA + G P
Sbjct: 1010 PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP 1049
Score = 37.7 bits (86), Expect = 0.004
Identities = 46/158 (29%), Positives = 53/158 (33%), Gaps = 21/158 (13%)
Query: 10 SDGYPVPRGP-----FPEGTPRLSGKQAI-----NDLQPTSAKEDRDCDIKGGGGGGGAG 59
SDG P P GP FP G+P G+ ++ P E G G G
Sbjct: 328 SDGQPGPPGPPGTAGFP-GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPP 386
Query: 60 GAEGGAGGAGRARERAESGRP--CGRRRHPQ---AEPAPKEFQGDGAAARADALTAGKSA 114
G G GG G G P G R P A AP G G + G
Sbjct: 387 GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKN-----GAKG 441
Query: 115 EPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
EP P GE GE G + E PG + G P
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLP 479
Score = 37.0 bits (84), Expect = 0.007
Identities = 45/156 (28%), Positives = 53/156 (33%), Gaps = 32/156 (20%)
Query: 12 GYPVPRGPF----------------PEGTPRLSGKQAINDLQ-PTSAK----EDRDCDIK 50
G+P P GP P G P +G + Q P K E IK
Sbjct: 1047 GHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIK 1106
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADALT 109
G G G GA G G AG+ G P G P+ P G DG +
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPG-PAG----PRGPVGPSGPPGKDGTSGHP---- 1157
Query: 110 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGA 145
G P P G GERG E + + P PGA
Sbjct: 1158 -GPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGA 1192
Score = 36.6 bits (83), Expect = 0.009
Identities = 42/145 (28%), Positives = 52/145 (35%), Gaps = 10/145 (6%)
Query: 12 GYPVPRGPFPE-GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP + G G Q + L T + G G G GA G GG G
Sbjct: 618 GPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGK-PGEPGPKGDAGAPGAPGGKGD 676
Query: 71 ARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
A E G P R P P+ G GAA G + P G GERG
Sbjct: 677 AGAPGERGPPGLAGAPGLRGGAGPPGPE--GGKGAAGPPG--PPGAAGTPGLQGMPGERG 732
Query: 127 EESASERESERAPGRGPGARSSAGE 151
+ + ++ GPGA G+
Sbjct: 733 GLGSPGPKGDKGEPGGPGADGVPGK 757
Score = 31.2 bits (69), Expect = 0.37
Identities = 32/136 (23%), Positives = 40/136 (29%), Gaps = 29/136 (21%)
Query: 23 GTPRLSGKQAI-------NDLQPTSAKEDRDCD-IKGGGGGGGAGGAEGGAGGAGRARER 74
G P L G+ + + P A +R + G G G GA G G G
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPG----- 333
Query: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERE 134
P P F G A G + P G G+RGE
Sbjct: 334 ------------PPGPPGTAGFPGSPGAKG----EVGPAGSPGSNGAPGQRGEPGPQGHA 377
Query: 135 SERAPGRGPGARSSAG 150
+ P PG S G
Sbjct: 378 GAQGPPGPPGINGSPG 393
Score = 31.2 bits (69), Expect = 0.37
Identities = 27/103 (26%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 49 IKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADA 107
+KG G G GA G G G +G P P P G DG A
Sbjct: 859 VKGERGSPGGPGAAGFPGARGLPGPPGSNGNP--------GPPGPSGSPGKDGPPGPAG- 909
Query: 108 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 150
G P G G+ G+ + P PG AG
Sbjct: 910 -NTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAG 951
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.5 bits (114), Expect = 2e-06
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
+GG G G GA+G AG G A ER G P G P+ P G+ A LT
Sbjct: 487 RGGPGSRGFPGADGVAGPKGPAGERGSPG-PAG----PKGSPGEAGRPGEAGLPGAKGLT 541
Query: 110 A--------GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
GK+ P P G+ G G + PG + +AGEP
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP 592
Score = 47.8 bits (112), Expect = 4e-06
Identities = 43/156 (27%), Positives = 57/156 (36%), Gaps = 27/156 (17%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G+P P+G G P +G++ + P A G G G GA+G G AG A
Sbjct: 581 GFPGPKGA--AGEPGKAGERGVPG--PPGAV--------GPAGKDGEAGAQGPPGPAGPA 628
Query: 72 RERAESGR--------------PCGRRRHPQAEPAPKEFQGDG-AAARADALTAGKSAEP 116
ER E G P G P + P + G + AR + G+
Sbjct: 629 GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ 688
Query: 117 APGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P G G RG A + + PGA S G P
Sbjct: 689 GPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724
Score = 47.0 bits (110), Expect = 6e-06
Identities = 47/142 (33%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 16 PRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
PRG P P G P G Q +P +G G G G +G AG GR ER
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPG-EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER 244
Query: 75 AESGRPCGRRRHPQAEPAP-----KEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEE 128
G P G R P P + F G DGA + DA AG EP GE G G+
Sbjct: 245 GPPG-PQGARGLPGTAGLPGMKGHRGFSGLDGA--KGDAGPAGPKGEPGSPGENGAPGQM 301
Query: 129 SASERESERAPGRGPGARSSAG 150
ER PG + G
Sbjct: 302 GPRGLPGERGRPGAPGPAGARG 323
Score = 44.7 bits (104), Expect = 3e-05
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 23/161 (14%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQAINDLQPT-------SAKEDR-DCDIKGGGGGGGAGGAE 62
G P P GP G P SG++ + + AK DR + G G GA GA
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP 1054
Query: 63 GGAGGAGRARERAESGR--------PCGRR-----RHPQAEPAPKEFQGDGAAARADALT 109
G G AG++ +R E+G P G R + P+ + QGD +
Sbjct: 1055 GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGD-RGIKGHRGF 1113
Query: 110 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 150
+G P P G GE+G AS R P GA G
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG 1154
Score = 43.5 bits (101), Expect = 7e-05
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
KG G G GA G G AGR SG P P P +G G R +
Sbjct: 862 KGARGSAGPPGATGFPGAAGRVGPPGPSG-----NAGPPGPPGPAGKEG-GKGPRGETGP 915
Query: 110 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AG+ E P G G GE+ + + PG + AG+
Sbjct: 916 AGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ 957
Score = 42.4 bits (98), Expect = 2e-04
Identities = 43/142 (30%), Positives = 47/142 (33%), Gaps = 11/142 (7%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P RG P P G +G D QP + E D KG G G G G G G
Sbjct: 797 GAPGDRGEPGPPGPAGFAGPPGA-DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGN 855
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
G P + A P P GAA R G S P G G G+E
Sbjct: 856 V------GAPGAKGARGSAGP-PGATGFPGAAGRVGP--PGPSGNAGPPGPPGPAGKEGG 906
Query: 131 SERESERAPGRGPGARSSAGEP 152
E P PG G P
Sbjct: 907 KGPRGETGPAGRPGEVGPPGPP 928
Score = 42.4 bits (98), Expect = 2e-04
Identities = 48/160 (30%), Positives = 61/160 (38%), Gaps = 25/160 (15%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDI-----------KGGGGGGGAG 59
G P P G P G P +GK+ + + R ++ KG G G
Sbjct: 884 GPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA 943
Query: 60 GAEGGAGGAGRARERAESGRP--CGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPA 117
GA G G G A +R G P G R P P P G + A +G+ P
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFP-GLPGPSGEPGKQGPSGA----SGERGPPG 998
Query: 118 PGGEGGERGEESASERE----SERAPGR--GPGARSSAGE 151
P G G G S RE +E +PGR PGA+ GE
Sbjct: 999 PMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
Score = 40.8 bits (94), Expect = 5e-04
Identities = 43/148 (29%), Positives = 53/148 (35%), Gaps = 30/148 (20%)
Query: 12 GYPVPRGPF----PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGG 67
G P P GP P G P G QP + KG G G GA G G
Sbjct: 371 GEPGPPGPAGAAGPAGNPGADG-------QPGA---------KGANGAPGIAGAPGFPGA 414
Query: 68 AGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
G + + G P + EP +GD A+ + G P P GE G+RG
Sbjct: 415 RGPSGPQGPGGPPGPKGN--SGEPGAPGSKGD-TGAKGEPGPVGVQGPPGPAGEEGKRG- 470
Query: 128 ESASERESERAPG-----RGPGARSSAG 150
+ E PG GPG+R G
Sbjct: 471 -ARGEPGPTGLPGPPGERGGPGSRGFPG 497
Score = 40.8 bits (94), Expect = 5e-04
Identities = 37/105 (35%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G GA GA G AG G R SG P G P P PK G+ A + T
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSG-PQG----PGGPPGPKGNSGEPGAPGSKGDTG 446
Query: 111 GKSAEPAP---GGEGGERGEESASERESERAPGRGPGARSSAGEP 152
K EP P G G GEE E P PG G P
Sbjct: 447 AKG-EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGP 490
Score = 39.3 bits (90), Expect = 0.001
Identities = 39/140 (27%), Positives = 44/140 (31%), Gaps = 22/140 (15%)
Query: 12 GYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP P G P L G A K + G G G G G G G
Sbjct: 139 GLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPG- 197
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
PQ P G+ A+ G P P G+ G+ GE
Sbjct: 198 ----------------PQGFQGPPGEPGEPGASGP----MGPRGPPGPPGKNGDDGEAGK 237
Query: 131 SERESERAPGRGPGARSSAG 150
R ER P GAR G
Sbjct: 238 PGRPGERGPPGPQGARGLPG 257
Score = 38.9 bits (89), Expect = 0.002
Identities = 46/150 (30%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP P G P G + Q E ++G G G GA G AG G
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ-GVRGEPGPPGPAGAAGPAGNPGA 390
Query: 71 ARE---RAESGRP--CGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEP-APGGEG-- 122
+ + +G P G P A P QG G G S EP APG +G
Sbjct: 391 DGQPGAKGANGAPGIAGAPGFPGAR-GPSGPQGPGGPPGPK----GNSGEPGAPGSKGDT 445
Query: 123 GERGEESASERESERAPGRGPGARSSAGEP 152
G +GE + P G R + GEP
Sbjct: 446 GAKGEPGPVGVQGPPGPAGEEGKRGARGEP 475
Score = 38.9 bits (89), Expect = 0.002
Identities = 41/151 (27%), Positives = 50/151 (33%), Gaps = 18/151 (11%)
Query: 10 SDGYPVPRGPFPE-GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGA 68
+ G P P GP E G +G L + G G G G G G
Sbjct: 618 AQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP-------GEAGKPGEQGVPGDLGAP 670
Query: 69 GRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG------ 122
G + R E G P R Q P P +G A D A APG +G
Sbjct: 671 GPSGARGERGFP--GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 728
Query: 123 --GERGEESASERESERAPGRGPGARSSAGE 151
GERG + +R GA S G+
Sbjct: 729 MPGERGAAGLPGPKGDRGDAGPKGADGSPGK 759
Score = 37.7 bits (86), Expect = 0.004
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
+G G G G +G AG G+A ER G P PA K+ +
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGPP------GAVGPAGKDGE------------ 615
Query: 110 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
AG P P G GERGE+ + + G AG+P
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKP 658
Score = 37.7 bits (86), Expect = 0.004
Identities = 33/116 (28%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQAE--------PAPKEFQGDG 100
G G G G G G AGR E G P G + P A+ P P+ G
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958
Query: 101 AAARADALTA--GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154
G P P GE G++G AS P PG GE R
Sbjct: 959 GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 1014
Score = 37.4 bits (85), Expect = 0.005
Identities = 46/164 (28%), Positives = 55/164 (33%), Gaps = 23/164 (14%)
Query: 11 DGYPVPRGPF-PEGTPRLSGKQ-AINDLQPTSAKEDRDCD-IKGGGGGGGAGGAEGGAG- 66
DG GP P+G P G+ A + P +R G G G GA G AG
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGP 333
Query: 67 -------------GAGRARERAESGRPCGRR-----RHPQAEPAPKEFQGDGAAARADAL 108
GA A+ A P G R P P G AD
Sbjct: 334 PGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQ 393
Query: 109 TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
K A AP G G G A + PG PG + ++GEP
Sbjct: 394 PGAKGANGAP-GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP 436
Score = 37.0 bits (84), Expect = 0.007
Identities = 41/145 (28%), Positives = 51/145 (35%), Gaps = 17/145 (11%)
Query: 16 PRGPFPEGTPRLSGKQAINDLQPTSA-KEDR-DCDIKGGGGGGGAGGAEG------GAGG 67
P P +G P L G K DR D KG G G G G G
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP 774
Query: 68 AGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
AG ++ ESG P G A AP + G AG + P G+ G +GE
Sbjct: 775 AGAPGDKGESG-PSGPAGPTGARGAPGDRGEPGPPG-----PAGFAGPPGADGQPGAKGE 828
Query: 128 ESASERESERAPGRGPGARSSAGEP 152
+ + + P PG AG P
Sbjct: 829 PGDAGAKGDAGP---PGPAGPAGPP 850
Score = 30.8 bits (68), Expect = 0.48
Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 16/154 (10%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDR-DCDIKGGGGGGGAGGAEGGAGGAGR 70
G VP G P G ++ D + T + + D +G G G G +G G G
Sbjct: 83 GAEVPEGECCPVCP--DGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGL 140
Query: 71 ARERAESGRP----CGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEP----APGGEG 122
G P G PQ E G + +G P APG +G
Sbjct: 141 PGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQG 200
Query: 123 -----GERGEESASERESERAPGRGPGARSSAGE 151
GE GE AS R P PG GE
Sbjct: 201 FQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGE 234
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 47.8 bits (112), Expect = 4e-06
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 17/145 (11%)
Query: 12 GYPVPRGPF----PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGG 67
G P PRGP EGTP L G QP + E + +G G G GA G G
Sbjct: 1172 GAPGPRGPQGPTGSEGTPGLPGGVG----QPGAVGEKGE---RGDAGDPGPPGAPGIPGP 1224
Query: 68 AGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
G E+ +SG P G P + P E DGA + G + P G+ G G
Sbjct: 1225 KGDIGEKGDSG-PSGAAGPPGKKGPPGE---DGA--KGSVGPTGLPGDLGPPGDPGVSGI 1278
Query: 128 ESASERESERAPGRGPGARSSAGEP 152
+ + + + GPG ++GEP
Sbjct: 1279 DGSPGEKGDPGDVGGPGPPGASGEP 1303
Score = 41.6 bits (96), Expect = 3e-04
Identities = 40/144 (27%), Positives = 53/144 (36%), Gaps = 12/144 (8%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGG--GAGGAEGGAGGA 68
G+P P+G P G L G + + + GG G G G+EG G A
Sbjct: 977 GFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPA 1036
Query: 69 GRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEE 128
G+ R E G P + P P G A AG S E G+ G G +
Sbjct: 1037 GKKGSRGERGPPGPTGK--DGIPGPLGPLGPPGA-------AGPSGEEGDKGDVGAPGHK 1087
Query: 129 SASERESERAPGRGPGARSSAGEP 152
+ + + P PG R AG P
Sbjct: 1088 GSKGDKGDAGPPGQPGIRGPAGHP 1111
Score = 39.7 bits (91), Expect = 0.001
Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 27/158 (17%)
Query: 10 SDGYPVPRGPFPE-------GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAE 62
S G+P P GP E G P L G++ P ++ +R G G G G +
Sbjct: 804 SIGFPGPLGPIGEKGKSGKTGQPGLEGERG-----PPGSRGER-----GQPGATGQPGPK 853
Query: 63 GGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG----DGAAA----RADALTAGKSA 114
G G G E G P + P P PK G DG R + G++
Sbjct: 854 GDVGQDGAPGIPGEKGLP--GLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTG 911
Query: 115 EPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P P G G +G+ ER P PG G P
Sbjct: 912 PPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLP 949
Score = 39.3 bits (90), Expect = 0.001
Identities = 41/150 (27%), Positives = 52/150 (34%), Gaps = 14/150 (9%)
Query: 10 SDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
S G P P+G GTP G N P D G G G GA+G G AG
Sbjct: 648 SQGLPGPQGLI--GTPGEKGPPG-NPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAG 704
Query: 70 -------RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG 122
R + R + + E F+GD + D GK P P GE
Sbjct: 705 PPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGD-VGLKGDQ---GKPGAPGPRGED 760
Query: 123 GERGEESASERESERAPGRGPGARSSAGEP 152
G G + + + E P G + G P
Sbjct: 761 GPEGPKGQAGQAGEEGPPGSAGEKGKLGVP 790
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/145 (27%), Positives = 50/145 (34%), Gaps = 12/145 (8%)
Query: 15 VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
+P P +G G Q LQ R G G GA GA G G G +R
Sbjct: 495 LPGHPGLKGEEGAEGPQGPRGLQGPHGPPGR----VGKMGRPGADGARGLPGDTGPKGDR 550
Query: 75 AESGRPCGRRRHPQ-------AEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
G P Q +P P G+ A T G++ EP P G G RG
Sbjct: 551 GFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPT-GQAGEPGPRGLLGPRGS 609
Query: 128 ESASERESERAPGRGPGARSSAGEP 152
+ R PGA+ + G P
Sbjct: 610 PGPTGRPGVTGIDGAPGAKGNVGPP 634
Score = 36.6 bits (83), Expect = 0.009
Identities = 42/153 (27%), Positives = 55/153 (35%), Gaps = 27/153 (17%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
GYP PRG + G LQ ++ D G G G G +G G G
Sbjct: 707 GYPGPRG--------VKGTSGNRGLQGEKGEKGED----GFPGFKGDVGLKGDQGKPGAP 754
Query: 72 RERAESGRPCGRRRHPQA-EPAPKEFQGDGAAARADALTA--------GKSAEPAPGGEG 122
R E G + + QA E P G+ L G P P G
Sbjct: 755 GPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPI 814
Query: 123 GERGEESASER---ESERAPGRGPGARSSAGEP 152
GE+G+ + + E ER P PG+R G+P
Sbjct: 815 GEKGKSGKTGQPGLEGERGP---PGSRGERGQP 844
Score = 35.4 bits (80), Expect = 0.019
Identities = 44/152 (28%), Positives = 54/152 (35%), Gaps = 26/152 (17%)
Query: 11 DGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
DG P P GP G P +G E+ D G G G+ G +G AG G+
Sbjct: 1054 DGIPGPLGPL--GPPGAAGPSG----------EEGDKGDVGAPGHKGSKGDKGDAGPPGQ 1101
Query: 71 ARERAESGRPC--------GRRRHPQAEPAPKEFQGDGAAARADAL-TAGKSAEPAPGGE 121
R +G P GRR P + DG + G P P GE
Sbjct: 1102 PGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGD---DGVRGFVGVIGPPGLQGLPGPPGE 1158
Query: 122 GGERGEESASERESERAPGRGP-GARSSAGEP 152
GE G+ + P RGP G S G P
Sbjct: 1159 KGEVGDVGSMGPHGAPGP-RGPQGPTGSEGTP 1189
Score = 34.3 bits (77), Expect = 0.043
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P PRG PEG P+ QA + P SA E + G G G G +G G G
Sbjct: 752 GAPGPRGEDGPEG-PKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGP 810
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
E G+ G+ P E + +R + G + +P P G+ G+ G
Sbjct: 811 LGPIGEKGK-SGKTGQPGLEG-----ERGPPGSRGERGQPGATGQPGPKGDVGQDG 860
Score = 33.5 bits (75), Expect = 0.074
Identities = 35/139 (25%), Positives = 45/139 (32%), Gaps = 12/139 (8%)
Query: 19 PFPEGTPRLSGKQAI----NDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
P P G P + G + D P+ A G G G GA+G G G +
Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGP-----PGKKGPPGEDGAKGSVGPTGLPGDL 1267
Query: 75 AESGRP--CGRRRHPQAEPAPKEFQGDGA-AARADALTAGKSAEPAPGGEGGERGEESAS 131
G P G P + P + G G A + G + P G G G E
Sbjct: 1268 GPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEK 1327
Query: 132 ERESERAPGRGPGARSSAG 150
+ E P PG G
Sbjct: 1328 GAKGEPGPDGPPGRTGPMG 1346
Score = 32.0 bits (71), Expect = 0.22
Identities = 36/141 (25%), Positives = 48/141 (34%), Gaps = 19/141 (13%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P+G +G P + G++ + LQ G G G G +G G G
Sbjct: 848 GQPGPKGDVGQDGAPGIPGEKGLPGLQGPP----------GFPGPKGPPGHQGKDGRPGH 897
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEES 129
+R E G + P P G G L G+ P P G GE+G
Sbjct: 898 PGQRGELGF-----QGQTGPPGPAGVLGPQGKTGEVGPL--GERGPPGPPGPPGEQGLPG 950
Query: 130 ASERESERAPGRGPGARSSAG 150
RE + PG G
Sbjct: 951 LEGREGAKGELGPPGPLGKEG 971
Score = 31.2 bits (69), Expect = 0.37
Identities = 41/160 (25%), Positives = 47/160 (29%), Gaps = 29/160 (18%)
Query: 12 GYPVPRGPF-------PEGTPRLSGKQ-------AINDLQPTSAKEDR----DCDIKGGG 53
G P P+G P G GK+ A + PT D D + G
Sbjct: 1220 GIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGID 1279
Query: 54 GGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAARADALTAGK 112
G G G G GG G E G P P + P G +G G
Sbjct: 1280 GSPGEKGDPGDVGGPGPPGASGEPGAP-----GPPGKRGPSGHMGREGREGEK-----GA 1329
Query: 113 SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
EP P G G G A P G GEP
Sbjct: 1330 KGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEP 1369
Score = 28.9 bits (63), Expect = 1.8
Identities = 36/138 (26%), Positives = 41/138 (29%), Gaps = 32/138 (23%)
Query: 16 PRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
P GP P G P L G D KG G G G G G AG E+
Sbjct: 1380 PPGPLGPSGLPGLKG----------------DTGPKGEKGHIGLIGLIGPPGEAG---EK 1420
Query: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERE 134
+ G P Q P PK G G P P G G G++ +
Sbjct: 1421 GDQGLP-----GVQGPPGPKGDPGPPGPI-------GSLGHPGPPGVAGPLGQKGSKGSP 1468
Query: 135 SERAPGRGPGARSSAGEP 152
P G G P
Sbjct: 1469 GSMGPRGDTGPAGPPGPP 1486
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 47.0 bits (110), Expect = 6e-06
Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 23/131 (17%)
Query: 18 GPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAES 77
GP PE PR +L+ +K + GGGGGG GG GG G E
Sbjct: 141 GP-PEEPPR--------ELESVPSKLGEPPPLGEGGGGGGEGGGAGGGSG------EREG 185
Query: 78 GRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESER 137
G P P P+ ++G G A+ + G+ A P+P + + S
Sbjct: 186 GAP--------QPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSG 237
Query: 138 APGRGPGARSS 148
G G G S
Sbjct: 238 VAGGGSGGGGS 248
Score = 33.9 bits (76), Expect = 0.057
Identities = 43/167 (25%), Positives = 54/167 (32%), Gaps = 52/167 (31%)
Query: 8 SLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGG 67
SL R P GT +N ++ ++ + K G G GG GG
Sbjct: 49 SLRQTIAATRSPVGAGTK-------LNSVRQQQLQQQQQQGNKTGSRTGPPASIRGGGGG 101
Query: 68 AGRARERAESG------RPC---------------GRRRHPQAEPAPKEFQGDGAAARAD 106
A +A A G +P GRR P EP P+E +
Sbjct: 102 AEKATPLAPKGAAPGAVQPVAGAEAAPAATLAALGGRRPGPPEEP-PRELES-------- 152
Query: 107 ALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPE 153
K EP P GEGG G G G GA +GE E
Sbjct: 153 --VPSKLGEPPPLGEGGGGG-------------GEGGGAGGGSGERE 184
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 46.2 bits (108), Expect = 1e-05
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 14 PVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73
P PRG P P G A L+PT DR C G GGG GGA+ G+ G+
Sbjct: 42 PRPRGLEPRHPP---GSPA---LRPT----DRTCSSSSAGVGGGVGGAQPGSVPLGQ-HL 90
Query: 74 RAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133
E GR G R + +P P + A D L G +PA G+ G + R
Sbjct: 91 ALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGR 150
Query: 134 ESERAPGRGPGARSSAG 150
+ G+ G + G
Sbjct: 151 QRRALGGQALGLLAQVG 167
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 46.2 bits (108), Expect = 1e-05
Identities = 42/137 (30%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query: 14 PVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73
P PRG P P G A L+PT DR C G GGG GGA+ G+ G+
Sbjct: 42 PRPRGLEPRHPP---GSPA---LRPT----DRTCSSSSAGVGGGVGGAQPGSVPLGQ-HL 90
Query: 74 RAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133
E GR G R + +P P + A D L G +PA G+ G + R
Sbjct: 91 ALERGRTLGHGRVGRRDPPPLGLLVNPRVAGVDGLDRGGRLDPAGIGQVLGLGVLGGAGR 150
Query: 134 ESERAPGRGPGARSSAG 150
+ G+ G + G
Sbjct: 151 QRRALGGQALGLLAQVG 167
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 45.8 bits (107), Expect = 1e-05
Identities = 44/152 (28%), Positives = 51/152 (33%), Gaps = 20/152 (13%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G P PRGP G P G Q P KG G G G G G G
Sbjct: 1252 GPPGPRGP--SGAPGADGPQG----PPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPK 1305
Query: 72 RERAESGR--------PCGRRRHP-----QAEPAPKEFQGDGAAARADALTAGKSAEPAP 118
ER E G P G + P + P P F GD + AG+ P
Sbjct: 1306 GERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPP-GEPGPAGQDGPPGD 1364
Query: 119 GGEGGERGEESASERESERAPGRGPGARSSAG 150
G+ GE G+ + E P PG R G
Sbjct: 1365 KGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPG 1396
Score = 41.6 bits (96), Expect = 3e-04
Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQA----INDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAG 66
G+P P GP +G P G++ + + P R G G GA G +G G
Sbjct: 1219 GFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPR-----GPSGAPGADGPQGPPG 1273
Query: 67 GAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERG 126
G G E G P E G+G P P GE GE+G
Sbjct: 1274 GIGNPGAVGEKGEP--------GEAGEPGLPGEGGP-------------PGPKGERGEKG 1312
Query: 127 EESASERESERAPGRGPGARSSAGEP 152
E S P PG G P
Sbjct: 1313 ESGPSGAAGPPGPKGPPGDDGPKGSP 1338
Score = 38.1 bits (87), Expect = 0.003
Identities = 46/161 (28%), Positives = 57/161 (35%), Gaps = 25/161 (15%)
Query: 12 GYPVPRGP--------FP--------EGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGG 55
GYP +GP FP GTP G + PT + +R +G G
Sbjct: 874 GYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG--PTGPRGERGP--RGITGK 929
Query: 56 GGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA----RADALTAG 111
G G GG G AG ER +G P G P + P DG R + G
Sbjct: 930 PGPKGNSGGDGPAGPPGERGPNG-PQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG 988
Query: 112 KSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
K+ P P G G +G + ER PG G P
Sbjct: 989 KTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLP 1029
Score = 37.7 bits (86), Expect = 0.004
Identities = 41/151 (27%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 16 PRG----PFPEGTPRLSGKQAINDLQ----PTSAKEDRDCD----IKGGGGGGGAGGAEG 63
PRG P P G P G+ + + T K DR D + G G G G G
Sbjct: 593 PRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSG 652
Query: 64 GAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL--TAGKSAEPAPGGE 121
G G ER + G G R P EP P+ G G +P P G
Sbjct: 653 PPGPPGDDGERGDDGE-VGPRGLP-GEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGN 710
Query: 122 GGERGEESASERESERAPGRGPGARSSAGEP 152
G +GE ++ PG + + G P
Sbjct: 711 VGPQGEPGPPGQQGNPGAQGLPGPQGAIGPP 741
Score = 37.7 bits (86), Expect = 0.004
Identities = 51/188 (27%), Positives = 62/188 (32%), Gaps = 49/188 (26%)
Query: 12 GYPVPRGPFPE-GTPRLSGKQAIN-----------DLQPTSAKEDRDCDIKGGGGGGGAG 59
G+P P GP E G P L+GK+ D P D + G G G
Sbjct: 1015 GHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLK 1074
Query: 60 GAEGGAGGAGRARERAESGRPCGR--------RRHPQAEPAPKEFQG-------DGAAAR 104
G EG G G A E G P G R PQ P P +G G A R
Sbjct: 1075 GNEGPPGPPGPAGSPGERG-PAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR 1133
Query: 105 ADALTA--------------------GKSAEPAPGGEGGERGEESASERESERAPGRGPG 144
D L G+ EP G G++GE+ + P PG
Sbjct: 1134 -DGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPG 1192
Query: 145 ARSSAGEP 152
+ GEP
Sbjct: 1193 PSGADGEP 1200
Score = 37.0 bits (84), Expect = 0.007
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQG-DGAAA----RA 105
G G G G +G G AG+ R +G G R P + PK +G DG A +
Sbjct: 586 GDVGPQGPRGVQGPPGPAGKPGRRGRAGSD-GARGMP-GQTGPKGDRGFDGLAGLPGEKG 643
Query: 106 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 150
G S P P G+ GERG++ E PG PG R G
Sbjct: 644 HRGDPGPSGPPGPPGDDGERGDD--GEVGPRGLPGE-PGPRGLLG 685
Score = 36.6 bits (83), Expect = 0.009
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 21/105 (20%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G G G +G G G E ++G P P EP P
Sbjct: 1348 GPPGEPGPAGQDGPPGDKGDDGEPGQTGSP-----GPTGEPGPSG-------------PP 1389
Query: 111 GKSAEPAPGGEGGERGEESA-SERESERAPGR-GP-GARSSAGEP 152
GK P P G G +GE+ A E E PG+ GP G + + G+P
Sbjct: 1390 GKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKP 1434
Score = 36.2 bits (82), Expect = 0.011
Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 15 VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
+P P P+G P +G++ + RD G G G G G G G ++
Sbjct: 1103 IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRD----GLQGPVGLPGPAGPVGPPGEDGDK 1158
Query: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPAPGGEGGE---RGEES 129
E G EP K +GD T G +P P G GE RG++
Sbjct: 1159 GEIG-----------EPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQG 1207
Query: 130 ASERESERAPGRGPGARSSAG 150
++ + P PG G
Sbjct: 1208 LFGQKGDEGPRGFPGPPGPVG 1228
Score = 34.7 bits (78), Expect = 0.033
Identities = 39/151 (25%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 10 SDGYPVPRGPF-------PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAE 62
+ G P P+G P G P L G + KE G GG G G +
Sbjct: 728 AQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPP----GEKGGQGPPGPQ 783
Query: 63 GGAGGAG-RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGE 121
G G G R + A+ R + + E F+GD + D G+ P P GE
Sbjct: 784 GPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGD-MGIKGDR---GEIGPPGPRGE 839
Query: 122 GGERGEESASERESERAPGRGPGARSSAGEP 152
G G + + P PG + G P
Sbjct: 840 DGPEGPKGRGGPNGDPGPLGPPGEKGKLGVP 870
Score = 32.3 bits (72), Expect = 0.16
Identities = 35/143 (24%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 11 DGYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
+G P GP P+G P G + + ++ G G G G G G G
Sbjct: 1416 EGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQ-------GLPGSPGPDGPPGPMGPPG 1468
Query: 70 RARERAESGRPCGRRRHPQAEP--APKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
+ +SG P G + HP P QG+ G P P G G +GE
Sbjct: 1469 LPGLKGDSG-PKGEKGHPGLIGLIGPPGEQGE----------KGDRGLPGPQGSSGPKGE 1517
Query: 128 ESASERESERAPGRGPGARSSAG 150
+ + P PG G
Sbjct: 1518 QGITGPSGPIGPPGPPGLPGPPG 1540
Score = 26.6 bits (57), Expect = 9.1
Identities = 41/152 (26%), Positives = 50/152 (32%), Gaps = 15/152 (9%)
Query: 9 LSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGA 68
L +G P P GP G P G PT + D +G G G GA+G G
Sbjct: 466 LIEGPPGPEGP--AGLPGPPGTMG-----PTG--QVGDPGERGPPGRPGLPGADGLPGPP 516
Query: 69 GRARE---RAESGRPCGRRR---HPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEG 122
G R G G + Q A Q A R A G + P P G
Sbjct: 517 GTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPP 576
Query: 123 GERGEESASERESERAPGRGPGARSSAGEPER 154
G G + + P G AG+P R
Sbjct: 577 GSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGR 608
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.4 bits (106), Expect = 2e-05
Identities = 47/175 (26%), Positives = 61/175 (34%), Gaps = 39/175 (22%)
Query: 16 PRGPFPEGTPRLSGKQA-INDLQPTSAKEDRD----CDIKGGGGGGGAGGAEGGAGGAGR 70
P P +G P + G++ + + P K +R C + G G G G G G AG
Sbjct: 2598 PGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGH 2657
Query: 71 ARERAESGRPCGRRRHPQAE--------------PAPKEFQGDGAAARADALTA------ 110
E E G P G+ P E P PK QG+ +
Sbjct: 2658 KGEMGEPGVP-GQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSG 2716
Query: 111 --GKSAEPAPGGEGGERGEESASERESER---------APG--RGPGARSSAGEP 152
G + P P G G RG E ++ ER APG PG R G P
Sbjct: 2717 NDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRP 2771
Score = 44.7 bits (104), Expect = 3e-05
Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 49 IKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL 108
+ G G GA G EG G GR E+ E GRP A PK +GD A
Sbjct: 1508 LPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGA 1567
Query: 109 TAGKS----------AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
T + +P P G+ G+RG + R PG + G P
Sbjct: 1568 TGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRP 1621
Score = 44.7 bits (104), Expect = 3e-05
Identities = 49/146 (33%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 19 PFPEGTPRLSGKQAINDLQPTSAKEDRD---CDIKGG-GGGGGAGGAEGGAGGAGRARER 74
P P+G P + G P K DR D + G G GA G G G AG+A +
Sbjct: 1754 PGPQGDPGVRG--------PAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDP 1805
Query: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPA-PGGEG--GERGEES 129
G P R Q P P G D GK+ EP PG +G GE+G+
Sbjct: 1806 GRDGLP--GLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSG 1863
Query: 130 ASERESERAP--GRG-PGARSSAGEP 152
AS RE P RG PG G P
Sbjct: 1864 ASGREGRDGPKGERGAPGILGPQGPP 1889
Score = 44.3 bits (103), Expect = 4e-05
Identities = 45/154 (29%), Positives = 56/154 (36%), Gaps = 20/154 (12%)
Query: 12 GYPVPRG-------PFPEGTPRLS----GKQAINDLQPTSAKEDRDCDIKGGGGGGGAGG 60
G+P RG P P+G P L+ G + L K + G GG G G
Sbjct: 1997 GFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIP-GLPGRAGGVGEAG 2055
Query: 61 AEGGAGGAGRARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAP 118
G G G ER E GR P G P P P G D G S E P
Sbjct: 2056 RPGERGERGEKGERGEQGRDGPPGLPGTP-GPPGPP-----GPKVSVDEPGPGLSGEQGP 2109
Query: 119 GGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G G +GE ++ + + PG + GEP
Sbjct: 2110 PGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEP 2143
Score = 41.2 bits (95), Expect = 4e-04
Identities = 39/143 (27%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 11 DGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
+G P P GP G P G + L+ K D + G G G G G G G+
Sbjct: 2433 EGIPGPLGP--PGPPGSVGPPGASGLK--GDKGDPGVGLPGPRGERGEPGIRGEDGRPGQ 2488
Query: 71 ARERAESGRPCGR-RRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEES 129
R +G P R R + + +GD + A+ G G+ GERG
Sbjct: 2489 EGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDS---AVILGPPGPRGAKGDMGERGPRG 2545
Query: 130 ASERESERAPGRGPGARSSAGEP 152
+ R PG + S GEP
Sbjct: 2546 LDGDKGPRGDNGDPGDKGSKGEP 2568
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/149 (26%), Positives = 51/149 (34%), Gaps = 12/149 (8%)
Query: 12 GYPVPRGPF----PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGG 67
G P P GP P+G+P L G Q +P + D G G G G+ G G
Sbjct: 2227 GLPGPPGPSGLVGPQGSPGLPG-QVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGP 2285
Query: 68 AGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL----TAGKSAEPAPGGEGG 123
G E +G P + P K +G D + G P P GE G
Sbjct: 2286 VGPKGEPGPTGAP---GQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKG 2342
Query: 124 ERGEESASERESERAPGRGPGARSSAGEP 152
E G E PG + G+P
Sbjct: 2343 EAGRAGEPGDPGEDGQKGAPGPKGFKGDP 2371
Score = 38.5 bits (88), Expect = 0.002
Identities = 46/166 (27%), Positives = 59/166 (35%), Gaps = 33/166 (19%)
Query: 12 GYPVPRGPF----PEGTPRLSGKQAINDLQPTSAKEDR-DCDIKGGGGGG---------- 56
G P PRGP P G P L G D K DR + G G GG
Sbjct: 1374 GPPGPRGPLGDPGPRGPPGLPGTAMKGD------KGDRGERGPPGPGEGGIAPGEPGLPG 1427
Query: 57 --GAGGAEGGAGGAGRARERAES--------GRPCGR-RRHPQAEPAPKEFQGDGAAARA 105
G+ G +G G G+ E+ +S G+P + P+ P +GD
Sbjct: 1428 LPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFP-G 1486
Query: 106 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AG+ E P G G RG + R + P PG GE
Sbjct: 1487 PLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGE 1532
Score = 38.5 bits (88), Expect = 0.002
Identities = 50/176 (28%), Positives = 60/176 (34%), Gaps = 36/176 (20%)
Query: 10 SDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
S G P P GP E P + QA+ L AK ++ G G GA+G G G
Sbjct: 2279 SPGLPGPVGPKGEPGPTGAPGQAVVGLP--GAKGEKGAPGGLAGDLVGEPGAKGDRGLPG 2336
Query: 70 RARERAESGRPCGRRRHP-----QAEPAPKEFQGDGAAA-------------RADALTAG 111
E+ E+GR G P + P PK F+GD + D G
Sbjct: 2337 PRGEKGEAGR-AGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPG 2395
Query: 112 KSAEPA----PG-----------GEGGERGEESASERESERAPGRGPGARSSAGEP 152
P PG G GERG RE P PG S G P
Sbjct: 2396 LPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPP 2451
Score = 37.0 bits (84), Expect = 0.007
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 49 IKGGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRR-----------RHPQAEPAPKE 95
+KG G G GA G G G+ R E G+ P G R P P P
Sbjct: 2387 VKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPG 2446
Query: 96 FQGDGAAA--RADALTAGKSAEPAPGGEGGE---RGEESASERESERAPGRGPGARSSAG 150
G A+ + D G P P GE GE RGE+ +E R PG+R G
Sbjct: 2447 SVGPPGASGLKGDKGDPGVGL-PGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERG 2505
Query: 151 E 151
E
Sbjct: 2506 E 2506
Score = 35.8 bits (81), Expect = 0.015
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G P PRG G P + G+ D +P ++ + G G G G +G G AG
Sbjct: 2466 GLPGPRGE--RGEPGIRGE----DGRPG---QEGPRGLTGPPGSRGERGEKGDVGSAGLK 2516
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 131
++ +S G P P+ +GD + G + P G+ G+ G++ +
Sbjct: 2517 GDKGDSAVILG-------PPGPRGAKGD----MGERGPRGLDGDKGPRGDNGDPGDKGSK 2565
Query: 132 ERESERAPGRGPGARSSAG 150
++ PG R G
Sbjct: 2566 GEPGDKGSAGLPGLRGLLG 2584
Score = 35.0 bits (79), Expect = 0.025
Identities = 34/134 (25%), Positives = 44/134 (32%), Gaps = 11/134 (8%)
Query: 21 PEGTPRLSGKQAINDLQ--PTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG 78
P G P L G+ Q P SA + G G G+ G G G G + G
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPG 1329
Query: 79 RPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERA 138
P P+ +P + +G A G PG +G+ S R
Sbjct: 1330 LP-----GPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPG----RKGDPGPSGPPGPRG 1380
Query: 139 PGRGPGARSSAGEP 152
P PG R G P
Sbjct: 1381 PLGDPGPRGPPGLP 1394
Score = 34.7 bits (78), Expect = 0.033
Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 52 GGGGGGAGGAEGGAGGAGRARERAESGRPCGR---------------RRHPQAEPAPKEF 96
GG G G G +G G +G R G P R R + P P
Sbjct: 1357 GGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGP--- 1413
Query: 97 QGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
G+G A + G P P G G G++ + APG PG S GE
Sbjct: 1414 -GEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGL-PGQPGSPGE 1466
Score = 34.7 bits (78), Expect = 0.033
Identities = 35/143 (24%), Positives = 49/143 (34%), Gaps = 30/143 (20%)
Query: 11 DGYP-VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P +P P P G P K ++++ P + E +KG G G+ G +G G G
Sbjct: 2075 DGPPGLPGTPGPPGPP--GPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRG 2132
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEES 129
+ + G EP P+ G+ P GE G G E
Sbjct: 2133 VPGIKGDRG-----------EPGPR----------------GQDGNPGLPGERGMAGPEG 2165
Query: 130 ASERESERAPGRGPGARSSAGEP 152
+ R P G G P
Sbjct: 2166 KPGLQGPRGPPGPVGGHGDPGPP 2188
Score = 34.3 bits (77), Expect = 0.043
Identities = 39/141 (27%), Positives = 53/141 (37%), Gaps = 16/141 (11%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP P G G++ D P D + G G G GA G G G
Sbjct: 1619 GRPGPPGPVGPRGRDGEVGEKG--DEGPPG-----DPGLPGKAGERGLRGAPGVRGPVGE 1671
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
++ + G GR P + PK +G+ G+ + PG E+GE
Sbjct: 1672 KGDQGDPGED-GRNGSPGSS-GPKGDRGEPGPPGPP----GRLVDTGPGAR--EKGEPGD 1723
Query: 131 SERESERAPGRGPGARSSAGE 151
+E R P PG + GE
Sbjct: 1724 RGQEGPRGPKGDPGLPGAPGE 1744
Score = 33.9 bits (76), Expect = 0.057
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 11 DGYPVPRGPFPE----GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAG 66
DG P P+G E GTP + G P + D G G G G+ G G
Sbjct: 2688 DGQPGPKGDQGEKGERGTPGIGGF-------PGPSGND------GSAGPPGPPGSVGPRG 2734
Query: 67 GAGRARERAESGRPCGRR--RHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGE 124
G ++ E G P G R P AP E G+ P P G GE
Sbjct: 2735 PEGLQGQKGERGPP-GERVVGAPGVPGAPGE--------------RGEQGRPGPAGPRGE 2779
Query: 125 RGEESASE 132
+GE + +E
Sbjct: 2780 KGEAALTE 2787
Score = 33.1 bits (74), Expect = 0.097
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
KG G G G G AG G + E G P R P P+ G+ + D
Sbjct: 1588 KGDPGDRGPIGLTGRAGPPGDSGPPGEKGDP--GRPGPPGPVGPRGRDGE-VGEKGDEGP 1644
Query: 110 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G P GE G RG E+ PG G P
Sbjct: 1645 PGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSP 1687
Score = 32.0 bits (71), Expect = 0.22
Identities = 36/140 (25%), Positives = 50/140 (35%), Gaps = 13/140 (9%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRA 71
G P PRG +G P L G++ + + + G GG G G G G AG A
Sbjct: 2141 GEPGPRGQ--DGNPGLPGERGMAGPEGKPGLQGPRGP-PGPVGGHGDPGPPGAPGLAGPA 2197
Query: 72 RERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESAS 131
+ SG + EP G G A+ G P P G G +G
Sbjct: 2198 GPQGPSGL--------KGEPGETGPPGRGLTGPTGAV--GLPGPPGPSGLVGPQGSPGLP 2247
Query: 132 ERESERAPGRGPGARSSAGE 151
+ E PG ++G+
Sbjct: 2248 GQVGETGKPGAPGRDGASGK 2267
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 45.4 bits (106), Expect = 2e-05
Identities = 50/161 (31%), Positives = 59/161 (36%), Gaps = 26/161 (16%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAIN------DLQPTSAKEDRDCD-IKGGGGGGGAGGAEG- 63
G P PRGP G P + G I+ PT A R KG G G G +G
Sbjct: 133 GLPGPRGP--PGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGE 190
Query: 64 -GAGGAGRARERA---------ESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKS 113
G G GR ER SG P +R P +GD R G
Sbjct: 191 MGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGD----RGFPGEMGPI 246
Query: 114 AEPAPGGEGGERGEESASERESERAPGRG--PGARSSAGEP 152
P P G GERG E + + APG+ PG + G P
Sbjct: 247 GPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAP 287
Score = 38.1 bits (87), Expect = 0.003
Identities = 42/155 (27%), Positives = 50/155 (32%), Gaps = 24/155 (15%)
Query: 12 GYPVPRGPF----PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGG 67
G+P GP P+G P G + I +P +A I G G GA G G G
Sbjct: 238 GFPGEMGPIGPPGPQGPPGERGPEGIG--KPGAAGAPGQPGIPGTKGLPGAPGIAGPPGP 295
Query: 68 AGRAR--------ERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA--GKSAEPA 117
G + ER +G P G P K QG LT G
Sbjct: 296 PGFGKPGLPGLKGERGPAGLPGG--------PGAKGEQGPAGLPGKPGLTGPPGNMGPQG 347
Query: 118 PGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P G G G P PGA+ G P
Sbjct: 348 PKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSP 382
Score = 33.9 bits (76), Expect = 0.057
Identities = 44/148 (29%), Positives = 50/148 (33%), Gaps = 17/148 (11%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDL--QPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
G P P+GP P GK+ N + QP IKG G G G G G G
Sbjct: 203 GLPGPQGPTGPSGPPGVGKRGENGVPGQP---------GIKGDRGFPGEMGPIGPPGPQG 253
Query: 70 RARERAESG--RP--CGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGE 124
ER G +P G P P K G G A GK P GE G
Sbjct: 254 PPGERGPEGIGKPGAAGAPGQPGI-PGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGP 312
Query: 125 RGEESASERESERAPGRGPGARSSAGEP 152
G + E+ P PG G P
Sbjct: 313 AGLPGGPGAKGEQGPAGLPGKPGLTGPP 340
Score = 33.9 bits (76), Expect = 0.057
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHPQAEPAPKEFQGDGAAARADAL 108
G G G GA+G G G + G+P G + +P P PK G G
Sbjct: 365 GPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGL-PGPKGDPGVGGPPGLPGP 423
Query: 109 TAGKSAEPAPG--GEGGERGEESASERESERAPGRGPGARSSAGEP 152
A+ PG GE G RG P PG S G+P
Sbjct: 424 VGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDP 469
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 45.4 bits (106), Expect = 2e-05
Identities = 36/105 (34%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
GGGGGGG GG GG GG G A GA A A A A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGA-------------------------GAGGAGAGAVAAAA 285
Query: 111 GKSAEPAPGGEGGERGEESA------SERESERAPGRGPGARSSA 149
+A A GG GG G SA S R+ GPG +A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 32.0 bits (71), Expect = 0.22
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 40/139 (28%)
Query: 52 GGGGGGA------------GGAEGGAGGAGRARERA---------------ESGRPCGRR 84
GG GGGA GGA+ A G G+A + G P G R
Sbjct: 83 GGAGGGAPQPGPDMEQPQHGGAKDSAAG-GQADPPGPPLLSKPGDEDDAPPKMGEPAGGR 141
Query: 85 -RHP-------QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESE 136
HP Q P G G AA + SA PA GG GG G + +
Sbjct: 142 YEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAG-PCFDQHGGQ 200
Query: 137 RAPGRG---PGARSSAGEP 152
++PG G + ++AG P
Sbjct: 201 QSPGMGMMHSASAAAAGAP 219
Score = 26.9 bits (58), Expect = 6.9
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G A A GA G+ + + G P + H P G G +
Sbjct: 204 GMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPG---ARSSAG 150
G G G G +A+ + A G G G SSAG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 45.4 bits (106), Expect = 2e-05
Identities = 36/105 (34%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
GGGGGGG GG GG GG G A GA A A A A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGA-------------------------GAGGAGAGAVAAAA 285
Query: 111 GKSAEPAPGGEGGERGEESA------SERESERAPGRGPGARSSA 149
+A A GG GG G SA S R+ GPG +A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 32.0 bits (71), Expect = 0.22
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 40/139 (28%)
Query: 52 GGGGGGA------------GGAEGGAGGAGRARERA---------------ESGRPCGRR 84
GG GGGA GGA+ A G G+A + G P G R
Sbjct: 83 GGAGGGAPQPGPDMEQPQHGGAKDSAAG-GQADPPGPPLLSKPGDEDDAPPKMGEPAGGR 141
Query: 85 -RHP-------QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESE 136
HP Q P G G AA + SA PA GG GG G + +
Sbjct: 142 YEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAG-PCFDQHGGQ 200
Query: 137 RAPGRG---PGARSSAGEP 152
++PG G + ++AG P
Sbjct: 201 QSPGMGMMHSASAAAAGAP 219
Score = 26.9 bits (58), Expect = 6.9
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G A A GA G+ + + G P + H P G G +
Sbjct: 204 GMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPG---ARSSAG 150
G G G G +A+ + A G G G SSAG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 45.4 bits (106), Expect = 2e-05
Identities = 36/105 (34%), Positives = 39/105 (37%), Gaps = 31/105 (29%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
GGGGGGG GG GG GG G A GA A A A A
Sbjct: 251 GGGGGGGGGGGSGGGGGGGGA-------------------------GAGGAGAGAVAAAA 285
Query: 111 GKSAEPAPGGEGGERGEESA------SERESERAPGRGPGARSSA 149
+A A GG GG G SA S R+ GPG +A
Sbjct: 286 AAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 32.0 bits (71), Expect = 0.22
Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 40/139 (28%)
Query: 52 GGGGGGA------------GGAEGGAGGAGRARERA---------------ESGRPCGRR 84
GG GGGA GGA+ A G G+A + G P G R
Sbjct: 83 GGAGGGAPQPGPDMEQPQHGGAKDSAAG-GQADPPGPPLLSKPGDEDDAPPKMGEPAGGR 141
Query: 85 -RHP-------QAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESE 136
HP Q P G G AA + SA PA GG GG G + +
Sbjct: 142 YEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAG-PCFDQHGGQ 200
Query: 137 RAPGRG---PGARSSAGEP 152
++PG G + ++AG P
Sbjct: 201 QSPGMGMMHSASAAAAGAP 219
Score = 26.9 bits (58), Expect = 6.9
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G A A GA G+ + + G P + H P G G +
Sbjct: 204 GMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPG---ARSSAG 150
G G G G +A+ + A G G G SSAG
Sbjct: 264 GGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAG 306
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 45.1 bits (105), Expect = 2e-05
Identities = 44/150 (29%), Positives = 56/150 (37%), Gaps = 27/150 (18%)
Query: 16 PRGP-------FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGA 68
PRGP EG+P + G Q I + + I G G G G +G AG A
Sbjct: 269 PRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPPG----INGKDGTPGTPGMKGSAGQA 324
Query: 69 GRARERAESG------RPCGRRRHP--QAEPAPKEFQGDGAAARADALTAGKSAEPAPGG 120
G+ G +P G + P Q EP P+ G GK EP P G
Sbjct: 325 GQPGSPGHQGLAGVPGQP-GTKGGPGDQGEPGPQGLPGFSGPP-------GKEGEPGPRG 376
Query: 121 EGGERGEESASERESERAPGRGPGARSSAG 150
E G +G + ER P PG + G
Sbjct: 377 EIGPQGIMGQKGDQGERGPVGQPGPQGRQG 406
Score = 42.7 bits (99), Expect = 1e-04
Identities = 43/144 (29%), Positives = 52/144 (36%), Gaps = 6/144 (4%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P +G P P+G P SG + +P E I G G G G G G GR
Sbjct: 346 GGPGDQGEPGPQGLPGFSGPPG-KEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGR 404
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAA--RADALTAGKSAEPAPGGEGGERGEE 128
+ E G P PQ P K +G R G + P GE GE GE
Sbjct: 405 QGPKGEQGPP--GIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEP 462
Query: 129 SASERESERAPGRGPGARSSAGEP 152
++ R PG AG P
Sbjct: 463 GPKGQQGVRGEPGYPGPSGDAGAP 486
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/142 (27%), Positives = 51/142 (35%), Gaps = 12/142 (8%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P P GP G P ++G + + P K + G G G G EG G GR
Sbjct: 223 GIPGPPGPQGIRGYPGMAGPKG--ETGPHGYK-----GMVGAIGATGPPGEEGPRGPPGR 275
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL--TAGKSAEPAPGGEGGERGEE 128
A E+ + G P R PQ PK G D T G G+ G G +
Sbjct: 276 AGEKGDEGSP--GIRGPQGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQ 333
Query: 129 SASERESERAPGRGPGARSSAG 150
+ + GPG + G
Sbjct: 334 GLAGVPGQPGTKGGPGDQGEPG 355
Score = 33.5 bits (75), Expect = 0.074
Identities = 40/156 (25%), Positives = 46/156 (29%), Gaps = 25/156 (16%)
Query: 6 ALSLSDGYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGG 64
AL+ G P RGP P G P + G I+ G G G G G
Sbjct: 21 ALAQIRGPPGERGPPGPPGPPGVPGSDGID----------------GDNGPPGKAGPPGP 64
Query: 65 AGGAGRARERAESGRP-CGRRRHPQAEPAPKEFQG-------DGAAARADALTAGKSAEP 116
G G+A G+P + EP P G G AG P
Sbjct: 65 KGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPPGPP 124
Query: 117 APGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
P G GE G P PG G P
Sbjct: 125 GPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRP 160
Score = 33.5 bits (75), Expect = 0.074
Identities = 41/148 (27%), Positives = 49/148 (33%), Gaps = 14/148 (9%)
Query: 12 GYPVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIK---GGGGGGGAGGAEGGAGG 67
G P P GP P G P G+ +Q D C G G G G +G AG
Sbjct: 140 GDPGPDGPSGPPGPPGKPGRPGT--IQGLEGSADFLCPTNCPPGMKGPPGLQGVKGHAGK 197
Query: 68 AGRARERAESGRPCGR----RRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGG 123
G + G+P + Q P P QG R AG E P G G
Sbjct: 198 RGILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQG----IRGYPGMAGPKGETGPHGYKG 253
Query: 124 ERGEESASERESERAPGRGPGARSSAGE 151
G A+ E P PG G+
Sbjct: 254 MVGAIGATGPPGEEGPRGPPGRAGEKGD 281
Score = 32.0 bits (71), Expect = 0.22
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 49 IKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHP-----QAEPAPKEFQGDGAAA 103
I G G G G +G G +G G P G R +P + E P ++G A
Sbjct: 200 ILGDPGHQGKPGPKGDVGASGEQGIPGPPG-PQGIRGYPGMAGPKGETGPHGYKGMVGAI 258
Query: 104 RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
A G E P G G GE+ R P G + + G P
Sbjct: 259 GA----TGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPP 303
Score = 29.6 bits (65), Expect = 1.1
Identities = 31/109 (28%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 19 PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESG 78
P P G P GKQ + G G G GA G G G +R E G
Sbjct: 558 PGPPGPPGYPGKQGPHGHP-------------GPRGVPGIVGAVGQIGNTGPKGKRGEKG 604
Query: 79 RPCGRRRHPQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERG 126
P R P P G G +A G P GE G G
Sbjct: 605 DPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPG 653
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 44.7 bits (104), Expect = 3e-05
Identities = 45/161 (27%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 12 GYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCD-----------IKGGGGGGGAGG 60
G+P P+GP G P +G + L D + ++GG G G G
Sbjct: 493 GFPGPKGP--TGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPG 550
Query: 61 AEGGAGGAGRARERAESGRPCGRRRHPQ-AEPAPKEFQGD-------GAAARADAL-TAG 111
G G G + E G+P R H + P P +G+ GAA + + G
Sbjct: 551 PPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRG 610
Query: 112 KSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
S P P G GE G A P PG R +AG P
Sbjct: 611 PSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIP 651
Score = 43.1 bits (100), Expect = 9e-05
Identities = 35/102 (34%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 54 GGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQA--EPAPKEFQGDGAAARADALT 109
G GA G GG G G R E G P G R P A P P GD R +A
Sbjct: 643 GERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD----RGEAGA 698
Query: 110 AGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AG + P G GERGE + P G + GE
Sbjct: 699 AGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
Score = 42.0 bits (97), Expect = 2e-04
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G GA G G G AG E G P PQ P P +G +A +A
Sbjct: 334 GAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG--PQGPPGPSGEEGK-RGPNGEAGSA 390
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 150
G P G G RG A R P PG+R ++G
Sbjct: 391 GPPGPPGLRGSPGSRGLPGADGRAGVMGP---PGSRGASG 427
Score = 39.7 bits (91), Expect = 0.001
Identities = 43/136 (31%), Positives = 53/136 (38%), Gaps = 11/136 (8%)
Query: 16 PRGPFPE-GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
P GP E G P LSG P + + KG G G GA G G G
Sbjct: 278 PAGPRGEVGLPGLSGPVG----PPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPV 333
Query: 75 AESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERE 134
+G R EP P +G+ + + + +AG P P GE G+RG E
Sbjct: 334 GAAGATGARGL--VGEPGPAGSKGE-SGNKGEPGSAGPQGPPGPSGEEGKRGPN--GEAG 388
Query: 135 SERAPGRGPGARSSAG 150
S PG PG R S G
Sbjct: 389 SAGPPG-PPGLRGSPG 403
Score = 39.7 bits (91), Expect = 0.001
Identities = 31/110 (28%), Positives = 38/110 (34%), Gaps = 9/110 (8%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESG-----RPCGRR--RHPQAEPAPKEFQGDGAAA 103
G G GA G G G G + E+G P G P P P +GDG
Sbjct: 724 GFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPP 783
Query: 104 RADAL--TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AG++ P P G G G + +E R P G GE
Sbjct: 784 GMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833
Score = 37.4 bits (85), Expect = 0.005
Identities = 43/145 (29%), Positives = 45/145 (31%), Gaps = 32/145 (22%)
Query: 11 DGYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAG 69
DG P GP P G P L G A D KG G G G G G G G
Sbjct: 56 DGPTGPPGPPGPPGPPGLGGNFAAQ------------YDGKGVGLGPGPMGLMGPRGPPG 103
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT--AGKSAEPAPGGEGGERGE 127
A P P+ FQG T AG P G+ GE G
Sbjct: 104 AA-----------------GAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGH 146
Query: 128 ESASERESERAPGRGPGARSSAGEP 152
R ER GAR G P
Sbjct: 147 PGKPGRPGERGVVGPQGARGFPGTP 171
Score = 37.0 bits (84), Expect = 0.007
Identities = 47/158 (29%), Positives = 54/158 (34%), Gaps = 30/158 (18%)
Query: 14 PVPRGPF-PEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRAR 72
P P G P G P +G Q + + G G G GA G AG G+A
Sbjct: 90 PGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP-------GEPGQTGPAGARGPAGPPGKAG 142
Query: 73 ERAESGR-----------PCGRRRHPQAEPAPKEFQGDGAAARADAL-----TAGKSAEP 116
E G+ P G R P P F+G D L G EP
Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFP-GTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEP 201
Query: 117 APGGEGGERGEESASERESER----APGRGPGARSSAG 150
GE G G+ A ER APG GAR S G
Sbjct: 202 GAPGENGTPGQTGARGLPGERGRVGAPGPA-GARGSDG 238
Score = 35.8 bits (81), Expect = 0.015
Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G GG G G G AGR SG P P P +G R D
Sbjct: 775 GSRGDGGPPGMTGFPGAAGRTGPPGPSGIS-----GPPGPPGPAGKEGL-RGPRGDQGPV 828
Query: 111 GKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G++ E G G GE+ S P PG + G P
Sbjct: 829 GRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAP 870
Score = 35.4 bits (80), Expect = 0.019
Identities = 36/138 (26%), Positives = 44/138 (31%), Gaps = 9/138 (6%)
Query: 15 VPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARER 74
+P G +G P L G+ + D G G G GA G G AG A
Sbjct: 650 IPGGKGEKGEPGLRGEIG-------NPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPA 702
Query: 75 AESGRPCGRRRHPQAEPA-PKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASER 133
+G + PA P F G AA G+ P GE G G
Sbjct: 703 GPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPG-AKGERGAKGPKGENGVVGPTGPVGA 761
Query: 134 ESERAPGRGPGARSSAGE 151
P PG S G+
Sbjct: 762 AGPAGPNGPPGPAGSRGD 779
Score = 35.0 bits (79), Expect = 0.025
Identities = 39/139 (28%), Positives = 44/139 (31%), Gaps = 38/139 (27%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRP-----CGRRRHPQAE--------------- 90
G G G GA G AG AG A R E G P G +P A
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA 318
Query: 91 -----PAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA------------SER 133
P P+ G AA A G EP P G GE G + S
Sbjct: 319 GAPGLPGPRGIPGPVGAAGATG-ARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGE 377
Query: 134 ESERAPGRGPGARSSAGEP 152
E +R P G+ G P
Sbjct: 378 EGKRGPNGEAGSAGPPGPP 396
Score = 35.0 bits (79), Expect = 0.025
Identities = 41/150 (27%), Positives = 53/150 (35%), Gaps = 16/150 (10%)
Query: 16 PRGPFPEGTPRLSGKQAIN--DLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARE 73
P P+G P SG++ + + SA ++G G G GA+G AG G
Sbjct: 363 PGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGS 422
Query: 74 RAESGR-----PCGRRRHPQAEPA---PKEFQGD----GAAARADAL-TAGKSAEPAPGG 120
R SG P G P EP P+ G G A + + G P P G
Sbjct: 423 RGASGPAGVRGPNGDAGRP-GEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIG 481
Query: 121 EGGERGEESASERESERAPGRGPGARSSAG 150
G RGE + P PG G
Sbjct: 482 PAGARGEPGNIGFPGPKGPTGDPGKNGDKG 511
Score = 34.3 bits (77), Expect = 0.043
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRP--CGRRRHPQAEPAPKEFQGDGAAARADA 107
+G G G+ G G G AGR G P G+ H P GAA
Sbjct: 906 RGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAG---- 961
Query: 108 LTAGKSAEPAPGGEGGERGEESAS------ERESERAPGRGPGARSSAGEP 152
G P G+ G RGE S R P G R GEP
Sbjct: 962 -APGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEP 1011
Score = 31.2 bits (69), Expect = 0.37
Identities = 40/158 (25%), Positives = 51/158 (32%), Gaps = 20/158 (12%)
Query: 12 GYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G P PRG P P G +G + + +P A + KG G G G G +G G+
Sbjct: 322 GLPGPRGIPGPVGAAGATGARGLVG-EPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGK 380
Query: 71 ARERAESGR-----PCGRRRHPQAEPAPKEFQGDG-------------AAARADALTAGK 112
E+G P G R P + P G A R AG+
Sbjct: 381 RGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGR 440
Query: 113 SAEPAPGGEGGERGEESASERESERAPGRGPGARSSAG 150
EP G G G + P PG G
Sbjct: 441 PGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPG 478
Score = 30.8 bits (68), Expect = 0.48
Identities = 35/133 (26%), Positives = 40/133 (30%), Gaps = 11/133 (8%)
Query: 20 FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGR 79
FP GTP L G + I +KG G G G G G G + G
Sbjct: 167 FP-GTPGLPGFKGIRGHNGLDG-------LKGQPGAPGVKGEPGAPGENGTPGQTGARGL 218
Query: 80 PCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAP 139
P R R PA A G + P G G +GE A P
Sbjct: 219 PGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGP 278
Query: 140 GRGPGARSSAGEP 152
G R G P
Sbjct: 279 A---GPRGEVGLP 288
Score = 30.8 bits (68), Expect = 0.48
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESG-----RPCGRRRHPQAEPAPKEFQGDGAAARA 105
G G GA G G G AG+ R E+G P G P+ P+ +GD
Sbjct: 955 GPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAG-AVGPRGPSGPQGIRGD------ 1007
Query: 106 DALTAGKSAEPAPGGEGGERGEES-------ASERESERAPGR-GP-GARSSAG 150
G+ E P G G +G A + APG GP G R AG
Sbjct: 1008 ----KGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAG 1057
Score = 30.4 bits (67), Expect = 0.63
Identities = 33/125 (26%), Positives = 38/125 (30%), Gaps = 31/125 (24%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
KG G G G G G GR E +G P P P P G+ AA+ D
Sbjct: 32 KGPAGDRGPRGERGPPGPPGRDGEDGPTGPP-----GPPGPPGPPGLGGN-FAAQYDGKG 85
Query: 110 AGKSAEP----------------------APGGEGGERGEESASERESERAPGRGPGARS 147
G P P GE GE G+ + R P PG
Sbjct: 86 VGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPA---GARGPAGPPGKAG 142
Query: 148 SAGEP 152
G P
Sbjct: 143 EDGHP 147
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 44.7 bits (104), Expect = 3e-05
Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 28/162 (17%)
Query: 15 VPRGPFPEGTPRLSGKQAINDLQ----------PTSAKEDRDCDIKGGGGGGGAGGAEGG 64
VP P P+G+P L G + + P E D I G G G G +G
Sbjct: 1027 VPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1086
Query: 65 AGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT-----AGKSAEPAPG 119
G G G P G +P + P E +GD D + AG P P
Sbjct: 1087 IGIPGMPGSPGLKGSP-GSVGYPGSPGLPGE-KGDKGLPGLDGIPGVKGEAGLPGTPGPT 1144
Query: 120 GEGGERGEE-------SASERESERAPGRG----PGARSSAG 150
G G++GE SA E+ PGRG PGA+ G
Sbjct: 1145 GPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKG 1186
Score = 37.7 bits (86), Expect = 0.004
Identities = 38/132 (28%), Positives = 47/132 (35%), Gaps = 22/132 (16%)
Query: 43 EDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRP--------------CGRRRH-- 86
+D D KG G G G G G G E+ E+G P G R +
Sbjct: 291 KDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPG 350
Query: 87 ---PQAEPAPKEFQG-DGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRG 142
P+ EP PK F G G G++ P GE GE+G+ GR
Sbjct: 351 TPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRD 410
Query: 143 --PGARSSAGEP 152
PG S G P
Sbjct: 411 GLPGPPGSPGPP 422
Score = 34.3 bits (77), Expect = 0.043
Identities = 43/169 (25%), Positives = 61/169 (36%), Gaps = 33/169 (19%)
Query: 16 PRGPFPEGTPRLSGKQA-INDLQPTSAKEDRD--CDIKGGGGGGGAGGAEGGAGGAGRAR 72
P P +G P + G+ I ++ K + CDI G G G G G G G+
Sbjct: 436 PGPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPG 495
Query: 73 ERAESGRP--------------CGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEP-- 116
+ + G P G P A+ P EF D + D G +P
Sbjct: 496 AKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFD-LRLKGDKGDPGFPGQPGM 554
Query: 117 -----APGGEG-----GERGEESASERESERAPGRG---PGARSSAGEP 152
+PG +G G +G + + ER P G PG+R G P
Sbjct: 555 TGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPP 603
Score = 33.5 bits (75), Expect = 0.074
Identities = 42/139 (30%), Positives = 50/139 (35%), Gaps = 18/139 (12%)
Query: 23 GTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCG 82
GTP + GK QP D I G G G G +G GG G E G P
Sbjct: 972 GTPGVPGKDGQAG-QPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVP-- 1028
Query: 83 RRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPG--GEGGERG-------EESASER 133
PQ P GD A+ + AG PG GE G++G E+
Sbjct: 1029 GIPGPQGSPG---LPGD-KGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEK 1084
Query: 134 ESERAPGR--GPGARSSAG 150
S PG PG + S G
Sbjct: 1085 GSIGIPGMPGSPGLKGSPG 1103
Score = 32.7 bits (73), Expect = 0.13
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 3/137 (2%)
Query: 16 PRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERA 75
P P P G P L G++ + P S+ D +KG G G G G +
Sbjct: 890 PGSPGPVGAPGLPGEKGDHGF-PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKG 948
Query: 76 ESGRPCGRRR-HPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERE 134
+ G + + P E + G D AG+ +P P G+ G G A
Sbjct: 949 QKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDG-QAGQPGQPGPKGDPGISGTPGAPGLP 1007
Query: 135 SERAPGRGPGARSSAGE 151
+ G G + GE
Sbjct: 1008 GPKGSVGGMGLPGTPGE 1024
Score = 31.6 bits (70), Expect = 0.28
Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
KG G G G G GG G R ++G P G + A P + Q
Sbjct: 573 KGSPGSVGLKGERGPPGGVGFPGSRGDTGPP-GPPGYGPAGPIGDKGQAGFPGGPGSPGL 631
Query: 110 AGKSAEPA--------PGGEG--GERG-EESASERESERAPGRG--PGARSSAGEP 152
G EP PG EG G G +R PGR PG + + G+P
Sbjct: 632 PGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQP 687
Score = 31.2 bits (69), Expect = 0.37
Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 52 GGGGGGAGGAEGGAGGAGRARERAESGRPC--GRRRHPQ--AEPAPKEFQGDGAAARADA 107
G G G G G G G+ ++ E G P G +P P+ +G+
Sbjct: 273 GVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPG 332
Query: 108 LTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
+ G P GE GERG E P PG G P
Sbjct: 333 IVIGTG----PLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPP 373
Score = 30.4 bits (67), Expect = 0.63
Identities = 29/110 (26%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 46 DCD-IKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAAR 104
DC +KG G G G +G G G G P ++ EP +G
Sbjct: 40 DCHGVKGQKGERGLPGLQGVIGFPGMQGPEGPQGPP--GQKGDTGEPGLPGTKGTRGPPG 97
Query: 105 ADALTAGKSAEPAPGGEG--GERGEESASERESERAPGRGPGARSSAGEP 152
A PG +G G G + + ER P PG AG P
Sbjct: 98 ASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNP 147
Score = 30.0 bits (66), Expect = 0.82
Identities = 36/153 (23%), Positives = 57/153 (37%), Gaps = 36/153 (23%)
Query: 12 GYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
G+ P GP P G P G+ ++ +G G G G G G G+
Sbjct: 200 GFTGPPGPPGPPGPPGEKGQMGLS--------------FQGPKGDKGDQGVSGPPGVPGQ 245
Query: 71 ARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESA 130
A+ + + + + EP + G G G+ +P P G+ G+ G++
Sbjct: 246 AQVQEKGDFATKGEKGQKGEPGFQGMPGVG--------EKGEPGKPGPRGKPGKDGDK-- 295
Query: 131 SERESERAPG----------RGP-GARSSAGEP 152
E+ S PG +GP G + AG P
Sbjct: 296 GEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPP 328
Score = 30.0 bits (66), Expect = 0.82
Identities = 36/146 (24%), Positives = 52/146 (35%), Gaps = 24/146 (16%)
Query: 23 GTPRLSGKQAINDLQ--PTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRP 80
G P L G+Q + P S E G G G G+ G G G E+ + G P
Sbjct: 858 GLPGLPGQQGAPGIPGFPGSKGE------MGVMGTPGQPGSPGPVGAPGLPGEKGDHGFP 911
Query: 81 CGRRRHPQAEPAPKEFQGD-------GAAARADALTA-------GKSAEPAPGGEGGERG 126
P+ +P K +GD G+ + D + G+ + P GE G RG
Sbjct: 912 GSSG--PRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRG 969
Query: 127 EESASERESERAPGRGPGARSSAGEP 152
+ + PG G+P
Sbjct: 970 DPGTPGVPGKDGQAGQPGQPGPKGDP 995
Score = 28.5 bits (62), Expect = 2.4
Identities = 37/142 (26%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 12 GYPVPRGP-FPEGTPRLSGKQAINDLQPTSAKEDRDCD-IKGGGGGGGAGGAEGGAGGAG 69
G P RGP +G P LSG I + D KG G G G G +G G
Sbjct: 802 GPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPG 861
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEES 129
++ G P P K G T G+ P P G G GE+
Sbjct: 862 LPGQQGAPGIP--------GFPGSKGEMGVMG-------TPGQPGSPGPVGAPGLPGEKG 906
Query: 130 ASERESERAPGRGPGARSSAGE 151
P PG + G+
Sbjct: 907 DHGFPGSSGPRGDPGLKGDKGD 928
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 44.7 bits (104), Expect = 3e-05
Identities = 49/159 (30%), Positives = 62/159 (38%), Gaps = 31/159 (19%)
Query: 10 SDGYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCD-IKGGGGGGGAGGAEGGAGG 67
SDG +G P PEG L+G ++ AK DR +G G G G +G G
Sbjct: 437 SDGPKGEKGDPGPEGPRGLAG-----EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491
Query: 68 AGRARERAESGRPC-------------GRRRHP--QAEPAPKEFQGD-------GAAARA 105
G A R +SG+P G R P + EP P+ +G G R
Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRK 551
Query: 106 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPG 144
G+ A+P P GE G RG E E P PG
Sbjct: 552 GE--KGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Score = 37.7 bits (86), Expect = 0.004
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAA--RA 105
KG G G GA G AG G ++ + GR P G + P P + G+ + R
Sbjct: 309 KGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDP-GNRGPDGYPGEAGSPGERG 367
Query: 106 DALTAGKSAEPAPGGEGGERGEE-SASERESERAPGR--------GPGARSSAGEPER 154
D G P G GE G + S + + APG GPG R GEP R
Sbjct: 368 DQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGR 425
Score = 35.4 bits (80), Expect = 0.019
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G G GA+GG G G E G P G + P ++ PK +GD L
Sbjct: 400 GAPGSPGVKGAKGGPGPRGPKGEPGRRGDP-GTKGSPGSD-GPKGEKGDPGPEGPRGLAG 457
Query: 111 GKSAEPAPGGEG--GERGEESA---SERESERAPGRGPGARSSAGEP 152
+ A G G G RG + A ++ R G R +G+P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQP 504
Score = 32.7 bits (73), Expect = 0.13
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPK---EFQGDGAAARADA 107
G G G GA+G G G ++ G P P P PK F+G+ AD
Sbjct: 259 GPKGYRGQKGAKGNMGEPGEPGQKGRQGDP--GIEGPIGFPGPKGVPGFKGEKGEFGADG 316
Query: 108 L-----TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AGK+ G+ G G R P PG S GE
Sbjct: 317 RKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE 365
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 44.7 bits (104), Expect = 3e-05
Identities = 49/159 (30%), Positives = 62/159 (38%), Gaps = 31/159 (19%)
Query: 10 SDGYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCD-IKGGGGGGGAGGAEGGAGG 67
SDG +G P PEG L+G ++ AK DR +G G G G +G G
Sbjct: 437 SDGPKGEKGDPGPEGPRGLAG-----EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491
Query: 68 AGRARERAESGRPC-------------GRRRHP--QAEPAPKEFQGD-------GAAARA 105
G A R +SG+P G R P + EP P+ +G G R
Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRK 551
Query: 106 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPG 144
G+ A+P P GE G RG E E P PG
Sbjct: 552 GE--KGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Score = 37.7 bits (86), Expect = 0.004
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAA--RA 105
KG G G GA G AG G ++ + GR P G + P P + G+ + R
Sbjct: 309 KGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDP-GNRGPDGYPGEAGSPGERG 367
Query: 106 DALTAGKSAEPAPGGEGGERGEE-SASERESERAPGR--------GPGARSSAGEPER 154
D G P G GE G + S + + APG GPG R GEP R
Sbjct: 368 DQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGR 425
Score = 35.4 bits (80), Expect = 0.019
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G G GA+GG G G E G P G + P ++ PK +GD L
Sbjct: 400 GAPGSPGVKGAKGGPGPRGPKGEPGRRGDP-GTKGSPGSD-GPKGEKGDPGPEGPRGLAG 457
Query: 111 GKSAEPAPGGEG--GERGEESA---SERESERAPGRGPGARSSAGEP 152
+ A G G G RG + A ++ R G R +G+P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQP 504
Score = 32.7 bits (73), Expect = 0.13
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPK---EFQGDGAAARADA 107
G G G GA+G G G ++ G P P P PK F+G+ AD
Sbjct: 259 GPKGYRGQKGAKGNMGEPGEPGQKGRQGDP--GIEGPIGFPGPKGVPGFKGEKGEFGADG 316
Query: 108 L-----TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AGK+ G+ G G R P PG S GE
Sbjct: 317 RKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE 365
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 44.7 bits (104), Expect = 3e-05
Identities = 49/159 (30%), Positives = 62/159 (38%), Gaps = 31/159 (19%)
Query: 10 SDGYPVPRG-PFPEGTPRLSGKQAINDLQPTSAKEDRDCD-IKGGGGGGGAGGAEGGAGG 67
SDG +G P PEG L+G ++ AK DR +G G G G +G G
Sbjct: 437 SDGPKGEKGDPGPEGPRGLAG-----EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGD 491
Query: 68 AGRARERAESGRPC-------------GRRRHP--QAEPAPKEFQGD-------GAAARA 105
G A R +SG+P G R P + EP P+ +G G R
Sbjct: 492 PGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRK 551
Query: 106 DALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPG 144
G+ A+P P GE G RG E E P PG
Sbjct: 552 GE--KGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Score = 37.7 bits (86), Expect = 0.004
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGR--PCGRRRHPQAEPAPKEFQGDGAAA--RA 105
KG G G GA G AG G ++ + GR P G + P P + G+ + R
Sbjct: 309 KGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDP-GNRGPDGYPGEAGSPGERG 367
Query: 106 DALTAGKSAEPAPGGEGGERGEE-SASERESERAPGR--------GPGARSSAGEPER 154
D G P G GE G + S + + APG GPG R GEP R
Sbjct: 368 DQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGR 425
Score = 35.4 bits (80), Expect = 0.019
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA 110
G G G GA+GG G G E G P G + P ++ PK +GD L
Sbjct: 400 GAPGSPGVKGAKGGPGPRGPKGEPGRRGDP-GTKGSPGSD-GPKGEKGDPGPEGPRGLAG 457
Query: 111 GKSAEPAPGGEG--GERGEESA---SERESERAPGRGPGARSSAGEP 152
+ A G G G RG + A ++ R G R +G+P
Sbjct: 458 EVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQP 504
Score = 32.7 bits (73), Expect = 0.13
Identities = 31/109 (28%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPK---EFQGDGAAARADA 107
G G G GA+G G G ++ G P P P PK F+G+ AD
Sbjct: 259 GPKGYRGQKGAKGNMGEPGEPGQKGRQGDP--GIEGPIGFPGPKGVPGFKGEKGEFGADG 316
Query: 108 L-----TAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGE 151
AGK+ G+ G G R P PG S GE
Sbjct: 317 RKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGE 365
>gi|119220564 one cut domain, family member 2 [Homo sapiens]
Length = 504
Score = 44.7 bits (104), Expect = 3e-05
Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGRP-------CGRRRHPQAEPAPKEFQGDGAAA 103
GG GGGG GG GG GG G +E S P G R P P + G AAA
Sbjct: 38 GGSGGGGGGGGGGGGGGPGHEQELLASPSPHHAGRGAAGSLRGPPPPPTAHQELGTAAAA 97
Query: 104 RADALTAGKSAEPAPGGEGGE 124
A A + A +GG+
Sbjct: 98 AAAASRSAMVTSMASILDGGD 118
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 44.7 bits (104), Expect = 3e-05
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 13/148 (8%)
Query: 16 PRGPF-PEGTPR---LSGKQAINDLQPTSAKEDRDCDIKGGG--GGGGAGGAEGGAGGAG 69
P GP P G P LSG + + ++ ++ ++ G G GA G G G G
Sbjct: 688 PVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAGELGEPGYPGDKGAVGLPGPPGMRG 747
Query: 70 RARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTA-----GKSAEPAPGGEGGE 124
++ ++G P + P P P+ F GD + G P P G G
Sbjct: 748 KSGPSGQTGDP--GLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGLLGNRGPPGPPGLKGT 805
Query: 125 RGEESASERESERAPGRGPGARSSAGEP 152
+GEE E P PG + AGEP
Sbjct: 806 QGEEGPIGAFGELGPRGKPGQKGYAGEP 833
Score = 44.7 bits (104), Expect = 3e-05
Identities = 47/150 (31%), Positives = 54/150 (36%), Gaps = 16/150 (10%)
Query: 12 GYPVPRG----PFPEGTPRLSGKQAINDLQPTSAKEDRDCDIK-GGGGGGGAGGAEGGAG 66
G P P G P G P G + + PT R K G G GA G G G
Sbjct: 1098 GLPGPEGIVGIPGQRGRPGKKGDKG--QIGPTGEVGSRGPPGKIGKSGPKGARGTRGAVG 1155
Query: 67 GAGRARERAESGRPCGRRRH-----PQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGE 121
G E G P G R H P P PK +G G EP P G+
Sbjct: 1156 HLGLMGPDGEPGIP-GYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGD 1214
Query: 122 GGERGEESASERESERAPGRGPGARSSAGE 151
GERGE A E + PG R + G+
Sbjct: 1215 QGERGEPGA---EGYKGHVGVPGLRGATGQ 1241
Score = 36.6 bits (83), Expect = 0.009
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALT 109
+G G G G G G G E + P G P+ EP P QG+ A+
Sbjct: 1172 RGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPG----PRGEPGPVGDQGERGEPGAEGYK 1227
Query: 110 A--------GKSAEPAPGGEGGERGEES-ASERESERAPGRGPGARSSAGEP 152
G + + P GE G++GE+ ER SE G+ GA +G+P
Sbjct: 1228 GHVGVPGLRGATGQQGPPGEPGDQGEQGLKGERGSEGNKGK-KGAPGPSGKP 1278
Score = 33.5 bits (75), Expect = 0.074
Identities = 33/111 (29%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRP--------CGRRRHPQAEPAPKEFQGDGA 101
KG G G G G G G ER G+P G R P EP + QGD
Sbjct: 944 KGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLP-GEPGLRGLQGDVG 1002
Query: 102 AARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
G P GE G +GE A G G GEP
Sbjct: 1003 PPGE----MGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEP 1049
Score = 32.0 bits (71), Expect = 0.22
Identities = 43/150 (28%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 12 GYPVPRGPFP-EGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGGAGR 70
GYP +G G P + GK P+ D G G G G EG G G
Sbjct: 729 GYPGDKGAVGLPGPPGMRGKSG-----PSGQTGD-----PGLQGPSGPPGPEGFPGDIGI 778
Query: 71 ARERAESGRPCGR--RRHPQAEPAPKEFQGD----GA----AARADALTAGKSAEPAPGG 120
+ G P G R P P K QG+ GA R G + EP P G
Sbjct: 779 PGQNGPEG-PKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEG 837
Query: 121 EGGERGEESASERESERAPGRGPGARSSAG 150
GE G++ + E P PG G
Sbjct: 838 LKGEVGDQGNIGKIGETGPVGLPGEVGMTG 867
Score = 30.8 bits (68), Expect = 0.48
Identities = 31/125 (24%), Positives = 40/125 (32%), Gaps = 23/125 (18%)
Query: 50 KGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHP-----------QAEPAPKEFQG 98
KG G G G +G G G ++ G P G + P Q P PK +G
Sbjct: 1353 KGEQGLPGQPGIQGKRGHRGAQGDQGPCGDP-GLKGQPGEYGVQGLTGFQGFPGPKGPEG 1411
Query: 99 DGAAA-----------RADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARS 147
D R + G+ P G G RGE+ + P PG
Sbjct: 1412 DAGIVGISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGPPG 1471
Query: 148 SAGEP 152
G P
Sbjct: 1472 PPGAP 1476
Score = 27.7 bits (60), Expect = 4.1
Identities = 30/118 (25%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 49 IKGGGGGGGAGGAEGGAGGAGRARERAESGRP--------CGRRRHPQAEPAPKEFQGDG 100
++G G G G G GG G R E G P G + P P E G
Sbjct: 1021 LQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKG 1080
Query: 101 AAARADAL-TAGKSAEPA-PGGEG-----GERGEESASERESERAPGRGPGARSSAGE 151
+ G+S + PG EG G+RG + + P G+R G+
Sbjct: 1081 EMGLPGIIGPLGRSGQTGLPGPEGIVGIPGQRGRPGKKGDKGQIGPTGEVGSRGPPGK 1138
Score = 27.3 bits (59), Expect = 5.3
Identities = 37/146 (25%), Positives = 49/146 (33%), Gaps = 27/146 (18%)
Query: 12 GYPVPRGPFPE----GTPRLSGKQAINDLQ--------PTSAKEDRDCDIKGGGGGGGAG 59
G P +GP E G P + GK+ Q P + + ++G G G
Sbjct: 1345 GSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGEYGVQGLTGFQGFP 1404
Query: 60 GAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPG 119
G +G G AG G P G R + G R + G + P
Sbjct: 1405 GPKGPEGDAGIVGISGPKG-PIGHRGNT------------GPLGREGII--GPTGRTGPR 1449
Query: 120 GEGGERGEESASERESERAPGRGPGA 145
GE G RGE + P PGA
Sbjct: 1450 GEKGFRGETGPQGPRGQPGPPGPPGA 1475
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 44.3 bits (103), Expect = 4e-05
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 51 GGGGGGGAGGAEGGAGGAGRARERAESGR----------PCGRRRHPQAEPAPKEFQ--- 97
GGGGGGG+GG+ GG G G SG P R P P P
Sbjct: 2292 GGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPVRHHPPV 2351
Query: 98 --GDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEP 152
A+++A+A ++ P P E+ S R PG EP
Sbjct: 2352 LVSSAASSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPSRRPPGADAEGSEREAEP 2408
Score = 26.9 bits (58), Expect = 6.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 56 GGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARA 105
G +GGA A +G A + +G CG AE A K+ A R+
Sbjct: 3 GSSGGAAAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRS 52
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 44.3 bits (103), Expect = 4e-05
Identities = 46/145 (31%), Positives = 56/145 (38%), Gaps = 17/145 (11%)
Query: 24 TPRLSGKQAIN-DLQPTSAKED---RDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGR 79
+PR+ K A P KE R G GG AGGA G R R R+ S
Sbjct: 342 SPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGA-GRRRRRRRRRRRSRSSA 400
Query: 80 PCGR---RRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGE-GGERGEESASERES 135
R RR P+ P P+ + AR+ + + P PG E G ERG +R
Sbjct: 401 SAPRRRGRRRPRPAP-PRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAK 459
Query: 136 ERAP-------GRGPGARSSAGEPE 153
ER P PGA G PE
Sbjct: 460 ERPPRARPASTSPSPGAHGRRGGPE 484
Score = 41.2 bits (95), Expect = 4e-04
Identities = 45/147 (30%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 8 SLSDGYPVPRGPFPEGTPRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAGGAEGGAGG 67
SLS Y R P RLS K ++ + T ++ GG G G + GG
Sbjct: 264 SLSSHYSDSRSP-----SRLSPKHR-DEGRKTGSQRSSGSRSPSPSGGSGWGSPQRN-GG 316
Query: 68 AGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGE 127
+G+ R A GRP P +P D AAA A P P RG+
Sbjct: 317 SGQ-RSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAA----------AAPTPPA----RGK 361
Query: 128 ESASERESERAPGRGPGARSSAGEPER 154
ES S R + + GRG A AG R
Sbjct: 362 ESPSPRSAPSSQGRGGRAAGGAGRRRR 388
Score = 34.3 bits (77), Expect = 0.043
Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 22/106 (20%)
Query: 57 GAGGAEGGAGGAGRARERAESGRPCGRRRH-------------------PQAEPAPKEFQ 97
G G A A RAR R+ S P +RR P P+P
Sbjct: 536 GEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSPSS-- 593
Query: 98 GDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGRGP 143
+ +D T S P+PG G S R R+P R P
Sbjct: 594 -SSSCLSSDYSTRSHSRSPSPGHSHGSYSSRSHGTRSRTRSPSRTP 638
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,794,811
Number of Sequences: 37866
Number of extensions: 585070
Number of successful extensions: 14323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 758
Number of HSP's that attempted gapping in prelim test: 4444
Number of HSP's gapped (non-prelim): 5455
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.