Guide to the Human Genome
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Name: ONECUT2 Sequence: fasta or formatted (504aa) NCBI GI: 119220564
Description:

one cut domain, family member 2

Referenced in:

Liver

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         41           8
 C cysteine            1.2          6           1
 D aspartate           2.6         13           2
 E glutamate           4.8         24           2
 F phenylalanine       2.2         11           2
 G glycine            10.5         53          14
 H histidine           6.2         31           8
 I isoleucine          2.0         10           1
 K lysine              4.2         21           2
 L leucine             9.9         50           2
 M methionine          4.2         21           2
 N asparagine          3.6         18           2
 P proline             8.5         43           5
 Q glutamine           4.8         24           2
 R arginine            6.2         31           3
 S serine             10.7         54           4
 T threonine           6.3         32           2
 V valine              1.8          9           1
 W tryptophan          0.8          4           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   one cut domain, family member 2 
ONECUT1               0.521   one cut homeobox 1 
ONECUT3               0.394   one cut homeobox 3 
POU4F2                0.056   Brn3b POU domain transcription factor 
CUX1                  0.047   cut-like homeobox 1 isoform a 
CUX2                  0.043   cut-like 2 
POU3F3                0.036   POU class 3 homeobox 3 
FUSSEL18              0.036   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.036   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.036   PREDICTED: functional smad suppressing element 18 [...
FOXL2                 0.033   forkhead box L2 
POU4F1                0.033   POU domain, class 4, transcription factor 1 
POU3F2                0.033   POU domain, class 3, transcription factor 2 
CAPNS1                0.032   calpain, small subunit 1 
CAPNS1                0.032   calpain, small subunit 1 
OTX1                  0.032   orthodenticle homeobox 1 
ARIH1                 0.029   ariadne ubiquitin-conjugating enzyme E2 binding pro...
AR                    0.029   androgen receptor isoform 1 
ZNF281                0.029   zinc finger protein 281 
NPAS3                 0.027   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.027   neuronal PAS domain protein 3 isoform 1 
SHOX2                 0.027   short stature homeobox 2 isoform a 
CBX4                  0.027   chromobox homolog 4 
ZSWIM6                0.027   zinc finger, SWIM-type containing 6 
DACH1                 0.027   dachshund homolog 1 isoform b 
DACH1                 0.027   dachshund homolog 1 isoform a 
DACH1                 0.027   dachshund homolog 1 isoform c 
ATN1                  0.027   atrophin-1 
ATN1                  0.027   atrophin-1 
ZFHX3                 0.027   AT-binding transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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