Guide to the Human Genome
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Name: C6orf174 Sequence: fasta or formatted (947aa) NCBI GI: 59806361
Description:

hypothetical protein LOC387104

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         94           8
 C cysteine            0.6          6           1
 D aspartate           4.5         43           3
 E glutamate          11.0        104           3
 F phenylalanine       2.0         19           2
 G glycine             9.7         92           6
 H histidine           1.6         15           2
 I isoleucine          3.4         32           2
 K lysine              6.1         58           2
 L leucine             9.2         87           2
 M methionine          2.1         20           1
 N asparagine          2.7         26           1
 P proline             6.3         60           4
 Q glutamine           6.2         59           6
 R arginine            7.9         75           2
 S serine              8.0         76           4
 T threonine           3.7         35           3
 V valine              3.2         30           1
 W tryptophan          0.3          3           1
 Y tyrosine            1.4         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC387104 
KIAA0802              0.296   hypothetical protein LOC23255 
C20orf117             0.214   hypothetical protein LOC140710 
ARID1B                0.032   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.032   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.032   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.032   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CCDC88A               0.032   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.032   coiled-coil domain containing 88A isoform 1 
KIAA1009              0.028   KIAA1009 protein 
DSP                   0.027   desmoplakin isoform I 
CROCC                 0.027   ciliary rootlet coiled-coil 
KIF20B                0.027   M-phase phosphoprotein 1 
PLEC1                 0.027   plectin 1 isoform 11 
PLEC1                 0.027   plectin 1 isoform 10 
PLEC1                 0.027   plectin 1 isoform 8 
PLEC1                 0.027   plectin 1 isoform 7 
PLEC1                 0.027   plectin 1 isoform 6 
PLEC1                 0.027   plectin 1 isoform 3 
PLEC1                 0.027   plectin 1 isoform 2 
PLEC1                 0.027   plectin 1 isoform 1 
CCDC88C               0.027   DVL-binding protein DAPLE 
DST                   0.027   dystonin isoform 1e precursor 
MYH1                  0.027   myosin, heavy chain 1, skeletal muscle, adult [Homo...
C14orf4               0.027   chromosome 14 open reading frame 4 
CEP250                0.026   centrosomal protein 2 
MYH8                  0.026   myosin, heavy chain 8, skeletal muscle, perinatal [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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