Guide to the Human Genome
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Search of human proteins with 169164936

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169164936 PREDICTED: family with sequence similarity 132,
member B [Homo sapiens]
         (367 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169164936 PREDICTED: family with sequence similarity 132, mem...   744   0.0  
gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap...   744   0.0  
gi|121949746 family with sequence similarity 132, member A [Homo...   172   4e-43
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]              50   2e-06
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]               50   2e-06
gi|50511941 EMI domain containing 1 [Homo sapiens]                     50   2e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    49   5e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    49   5e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       49   5e-06
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]             49   5e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    48   2e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    48   2e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    48   2e-05
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         45   8e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    45   1e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    45   1e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    45   1e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ...    45   1e-04
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [...    45   1e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           45   1e-04
gi|118498339 EMI domain containing 2 [Homo sapiens]                    44   2e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       44   2e-04
gi|5729785 complement component 1, q subcomponent-like 1 [Homo s...    44   2e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]        44   2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      44   3e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    44   3e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    44   3e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    44   3e-04
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ...    43   4e-04
gi|18641360 collectin sub-family member 12 [Homo sapiens]              43   4e-04

>gi|169164936 PREDICTED: family with sequence similarity 132, member
           B [Homo sapiens]
          Length = 367

 Score =  744 bits (1920), Expect = 0.0
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60
           MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA
Sbjct: 1   MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60

Query: 61  GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120
           GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK
Sbjct: 61  GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120

Query: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
           FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL
Sbjct: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180

Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240
           APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY
Sbjct: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240

Query: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300
           YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC
Sbjct: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300

Query: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360
           IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF
Sbjct: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360

Query: 361 SAVLLGV 367
           SAVLLGV
Sbjct: 361 SAVLLGV 367


>gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo
           sapiens]
          Length = 367

 Score =  744 bits (1920), Expect = 0.0
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60
           MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA
Sbjct: 1   MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60

Query: 61  GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120
           GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK
Sbjct: 61  GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120

Query: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
           FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL
Sbjct: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180

Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240
           APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY
Sbjct: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240

Query: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300
           YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC
Sbjct: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300

Query: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360
           IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF
Sbjct: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360

Query: 361 SAVLLGV 367
           SAVLLGV
Sbjct: 361 SAVLLGV 367


>gi|121949746 family with sequence similarity 132, member A [Homo
           sapiens]
          Length = 302

 Score =  172 bits (436), Expect = 4e-43
 Identities = 122/318 (38%), Positives = 162/318 (50%), Gaps = 53/318 (16%)

Query: 51  PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPT-AERAHSVDPRDAWMLFVRQSDKGVNGK 109
           P  R+ PP A   A   E     GL    +P+ A      D    W+ FVR+ D G   +
Sbjct: 35  PGQRADPPNATASASSRE-----GLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGAL-R 88

Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCT 169
           KR   + KK +  L GPPGPPG +      +  E LL EFQ LLK A  +R         
Sbjct: 89  KRCGSRDKKPR-DLFGPPGPPGAE------VTAETLLHEFQELLKEATERR--------- 132

Query: 170 CGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPRVEAAFLCRLRRDAL 228
                                         + L  PL P G     V  AF CRL+    
Sbjct: 133 -----------------------------FSGLLDPLLPQGAGLRLVGEAFHCRLQGPRR 163

Query: 229 VERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGP 288
           V++R L EL  +  P A+GAF RG GL+L SG++ APV+G +  +A+LHV   E   +  
Sbjct: 164 VDKRTLVELHGFQAPAAQGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKAR 223

Query: 289 PRPRDHLRLLICIQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNAS 348
            R RD + +LICI+S CQR+  LEA+ GLES+S +FT+ V G+L LQ GQ+ SVF+DN S
Sbjct: 224 LRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGS 283

Query: 349 GCSLTVRSGSHFSAVLLG 366
           G  LT+++GS FS +LLG
Sbjct: 284 GAVLTIQAGSSFSGLLLG 301


>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
          Length = 389

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 35  LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAV--FQEPTAERAHSVDPR 92
           LG   P S  +     P P+  P   G  A  S++     +A+  F  P  +     + R
Sbjct: 93  LGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESR 152

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
                   +S++G +G  +++ K KK   G PGP GPPGP GPPGP  PP
Sbjct: 153 RVRRNKRSKSNEGADGPVKNKKKGKKA--GPPGPNGPPGPPGPPGPQGPP 200



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGPPGPPGPQGPPG
Sbjct: 215 GPPGPPGPPGPQGPPG 230



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 12/14 (85%), Positives = 12/14 (85%)

Query: 125 GPPGPPGPQGPPGP 138
           GPPGPPGP GP GP
Sbjct: 215 GPPGPPGPPGPQGP 228



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PGPPGP GP G  GP
Sbjct: 218 GPPGPPGPQGPPGLQGP 234



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPG QGP G
Sbjct: 221 GPPGPQGPPGLQGPSG 236


>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
          Length = 391

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 35  LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAV--FQEPTAERAHSVDPR 92
           LG   P S  +     P P+  P   G  A  S++     +A+  F  P  +     + R
Sbjct: 93  LGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESR 152

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
                   +S++G +G  +++ K KK   G PGP GPPGP GPPGP  PP
Sbjct: 153 RVRRNKRSKSNEGADGPVKNKKKGKKA--GPPGPNGPPGPPGPPGPQGPP 200



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGPPGPPGPQGPPG
Sbjct: 215 GPPGPPGPPGPQGPPG 230



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 12/14 (85%), Positives = 12/14 (85%)

Query: 125 GPPGPPGPQGPPGP 138
           GPPGPPGP GP GP
Sbjct: 215 GPPGPPGPPGPQGP 228



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PGPPGP GP G  GP
Sbjct: 218 GPPGPPGPQGPPGLQGP 234



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPG QGP G
Sbjct: 221 GPPGPQGPPGLQGPSG 236


>gi|50511941 EMI domain containing 1 [Homo sapiens]
          Length = 443

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 40/130 (30%), Positives = 51/130 (39%), Gaps = 10/130 (7%)

Query: 51  PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
           P P   PP A G           G      PT  +  +       M    +   G  G  
Sbjct: 176 PAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGM----RGPPGPQGPP 231

Query: 111 RSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPPEALLKEF-QLLLKGAVRQRERAEP 165
            S G+A  +    + G PGPPGPPGP GPP P+ PP A + +    LL     +     P
Sbjct: 232 GSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWP 291

Query: 166 EPCTCGPAGP 175
           +  T GP GP
Sbjct: 292 QGPT-GPPGP 300



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 35/108 (32%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 36  GSASPMSAKSRPRCGPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
           GS  PM  +  P  GP  P   P RAG    P E   P        P         P   
Sbjct: 214 GSRGPMGMRGPP--GPQGPPGSPGRAGAVGTPGERGPPG-------PPGPPGPPGPPAPV 264

Query: 95  WMLFVRQSDKG----VNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
                R S  G     N    +     +   G PGPPGP GP GPPGP
Sbjct: 265 GPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPPGPMGPPGPPGP 312



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           KG++G    +G+ + L+ G PGP G  G +G PGP
Sbjct: 331 KGISGHPGEKGE-RGLR-GEPGPQGSAGQRGEPGP 363


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 50/134 (37%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 47  PRCGP-FPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKG 105
           P  GP FP +  P A GEA P+ A  P G    Q P  E      P  A       +D G
Sbjct: 361 PAGGPGFPGA--PGAKGEAGPTGARGPEGA---QGPRGEPGTPGSPGPAGASGNPGTD-G 414

Query: 106 VNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
           + G K S G        G PGP GPPGPQG  GP+ P     +      KG   Q  + E
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGE 472

Query: 165 PEPCTCGPAGPVAA 178
           P     GPAGP  A
Sbjct: 473 P-----GPAGPQGA 481



 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER-A 163
           G  G K  +G+   +K  + GP GPPGPQGP G   P      + +   KGA   R R  
Sbjct: 98  GQPGPKGQKGEPGDIK-DIVGPKGPPGPQGPAGEQGPRGDRGDKGE---KGAPGPRGRDG 153

Query: 164 EP-EPCTCGPAGPVAASLAP------VSATAGEDDDDVVGDVLALLAAPLAP-GPRAP 213
           EP  P   GP GP      P       +  AG  D+   G  L ++  P+ P GPR P
Sbjct: 154 EPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGP 211



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 29/203 (14%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
           + DKG  G    RG+  +   G PG PGPPGP GPPG    P  L   F   + G   ++
Sbjct: 137 RGDKGEKGAPGPRGRDGEP--GTPGNPGPPGPPGPPG----PPGLGGNFAAQMAGGFDEK 190

Query: 161 ERAEPEPCTCGPAGPVAASLAPVSATA----------GEDDDDVVGDVLALLAAPLAPGP 210
                     GP GP+     P  A A          GE  +  V   +     P  PG 
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK 250

Query: 211 RAPRVEAAFLCRL-RRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAG 268
                EA    +   R     + A    G   LP  +G  R  PGL+   G+  AP V G
Sbjct: 251 PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG-HRGYPGLDGAKGEAGAPGVKG 309

Query: 269 FYALAATLHVALGEPPRRGPPRP 291
                       G P   G P P
Sbjct: 310 ----------ESGSPGENGSPGP 322



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 39  SPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLF 98
           +P     R   GP     P  A GE        PAG A  +    ER  +  P  A    
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG 837

Query: 99  VRQSDKGVNGKKRSRGKA-KKLKFGLPGPPGP---PGPQGPPGPIIPPEA 144
              +D G  G K  +G+A +K   G PGP GP   PGPQGP G   P  A
Sbjct: 838 PPGAD-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 886



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE---PEPCTCGPAGPVAA 178
           G PGP GPPGP GP G    P A   + +    GA R  E A+    EP T G  GP  A
Sbjct: 348 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA-RGPEGAQGPRGEPGTPGSPGPAGA 406

Query: 179 SLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
           S  P   T G            +  AP  PGPR P
Sbjct: 407 SGNP--GTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 43/178 (24%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD--------PRDAWMLFVRQ 101
            GP  +  P  A G++ P       GL     P  E+    D        P     L  ++
Sbjct: 921  GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980

Query: 102  SDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---------PPGPIIPPEALLKEFQLL 152
               G+ G++  RG       GLPGP G PG QG         PPGP+ PP          
Sbjct: 981  GIVGLPGQRGERGFP-----GLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--------- 1026

Query: 153  LKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210
            L G   +  R E  P   GP G   A  A V    GE            + AP APGP
Sbjct: 1027 LTGPAGEPGR-EGSPGADGPPGRDGA--AGVKGDRGE---------TGAVGAPGAPGP 1072



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 32/108 (29%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
            GP  +       G   P   + PAG    Q P   R                 DKG  G+
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG----------------DKGEAGE 1123

Query: 110  KRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP 141
               RG      F    GLPGPPGP G            P+GPPGP+ P
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1171



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
            G  G+    G A     G PG PGPPGP GPPGP I   A
Sbjct: 1188 GPRGRSGETGPA-----GPPGNPGPPGPPGPPGPGIDMSA 1222



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 47   PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
            P   P  +  P  +G    P     P       EP  E +   D         R    GV
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAAGV 1054

Query: 107  NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
             G +   G       G PG PGPPG  GP GP
Sbjct: 1055 KGDRGETGAV-----GAPGAPGPPGSPGPAGP 1081



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 17/114 (14%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGE-AEPSEANRPA--GLAVFQEPTAERAHSVDPR 92
           G   P  A+ +P    FP   P  A GE  +  E   P   GL        E   +  P 
Sbjct: 588 GPPGPQGARGQPGVMGFPG--PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPI-IPPEA 144
            A          G  G++  +G      F GLPGPPGPPG  G PG   +P EA
Sbjct: 646 PA----------GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 689



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 39/156 (25%)

Query: 42  SAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAER--AHSVDPRDAWMLFV 99
           SA +R   G    + PP   G A P  A+   G    Q    ++  A +  P+       
Sbjct: 814 SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873

Query: 100 RQSDKGVNGKKRSRGK----------------AKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
            Q   GV G K +RG                       G PGPPGPPGP G  GP     
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP----- 928

Query: 144 ALLKEFQLLLKGAVRQRERAEP----EPCTCGPAGP 175
                     KGA  + +   P    EP   GPAGP
Sbjct: 929 ----------KGA--RGDSGPPGRAGEPGLQGPAGP 952



 Score = 37.0 bits (84), Expect = 0.028
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G A P   +   +  P P       G    P E  +P    V  E  A     V PR   
Sbjct: 645 GPAGPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL--VGPR--- 698

Query: 96  MLFVRQSDKGVNGKKRSRGKAKKLKF--GLPGPPGPPGPQGPPGPIIPPEA 144
                  ++G  G++ S G A+ L+   GLPG PG  GP+G  GP  PP A
Sbjct: 699 ------GERGFPGERGSPG-AQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 742



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 35  LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPR-- 92
           +G   P   +  P    FP      AG +  P E   P+GLA  +    +     +P   
Sbjct: 500 VGPIGPPGERGAPGNRGFP-GQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLP 557

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            A  L  R  D G  GK    G   +   G PGPPGP G +G PG
Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGE--DGRPGPPGPQGARGQPG 600



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 50  GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
           GP  PR  P   G   +  EA +P G A  + P   +     P    +  V+   +G  G
Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPGVK-GHRGYPG 294

Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPC 168
              ++G+A     G+ G  G PG  G PGP+ P     +  +    GA   R   + +P 
Sbjct: 295 LDGAKGEAGAP--GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN-DGQPG 351

Query: 169 TCGPAGPVAASLAP 182
             GP GPV  +  P
Sbjct: 352 PAGPPGPVGPAGGP 365



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 33/107 (30%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 31  GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
           GG  LG          PR  P P   P   G +  P E   P        P   R     
Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG----VSGPMGPRGPPGP 247

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           P        +  D G  GK    GKA     G  GPPGP G +G PG
Sbjct: 248 PG-------KPGDDGEAGKP---GKA-----GERGPPGPQGARGFPG 279



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 28/94 (29%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
           G  G PGP GPQG PGP                     +  A  EP   GP GP     A
Sbjct: 468 GPKGEPGPAGPQGAPGP----------------AGEEGKRGARGEPGGVGPIGPPGERGA 511

Query: 182 PVS-ATAGEDDDDVVGDVLALLAAPL-APGPRAP 213
           P +    G+D           LA P  APG R P
Sbjct: 512 PGNRGFPGQDG----------LAGPKGAPGERGP 535



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 51  PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
           P P     + G +  P EA  P  +     P  ER    + R +      Q  +G+ G  
Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVG----PRGERGFPGE-RGSPGAQGLQGPRGLPGTP 725

Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            + G       G  GP GPPG QGPPG
Sbjct: 726 GTDGPK-----GASGPAGPPGAQGPPG 747



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 15/36 (41%)

Query: 122  GLPGPPGPPGPQ---------------GPPGPIIPP 142
            G+PGP GPPGP+               GPPGP  PP
Sbjct: 1179 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1214



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 34/126 (26%)

Query: 57  PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116
           P  A G A P  A  P GL   Q    ER  +                G+ G K  RG  
Sbjct: 730 PKGASGPAGPPGAQGPPGL---QGMPGERGAA----------------GIAGPKGDRGDV 770

Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176
            +   G  G PG  G +G  GPI PP             A    E+ E  P   GPAG  
Sbjct: 771 GEK--GPEGAPGKDGGRGLTGPIGPPGP-----------AGANGEKGEVGP--PGPAGSA 815

Query: 177 AASLAP 182
            A  AP
Sbjct: 816 GARGAP 821



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           G +G K + G A     G PG  GPPG QG PG
Sbjct: 726 GTDGPKGASGPA-----GPPGAQGPPGLQGMPG 753


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 50/134 (37%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 47  PRCGP-FPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKG 105
           P  GP FP +  P A GEA P+ A  P G    Q P  E      P  A       +D G
Sbjct: 292 PAGGPGFPGA--PGAKGEAGPTGARGPEGA---QGPRGEPGTPGSPGPAGASGNPGTD-G 345

Query: 106 VNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
           + G K S G        G PGP GPPGPQG  GP+ P     +      KG   Q  + E
Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGE 403

Query: 165 PEPCTCGPAGPVAA 178
           P     GPAGP  A
Sbjct: 404 P-----GPAGPQGA 412



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 70/259 (27%), Positives = 87/259 (33%), Gaps = 42/259 (16%)

Query: 48  RCGPFPRSHPPRAGGEAEPSEANR---PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDK 104
           RC       P   G + EP +      P G    Q P  E+    D          + DK
Sbjct: 22  RCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD----------RGDK 71

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
           G  G    RG+  +   G PG PGPPGP GPPG    P  L   F   + G   ++    
Sbjct: 72  GEKGAPGPRGRDGEP--GTPGNPGPPGPPGPPG----PPGLGGNFAAQMAGGFDEKAGGA 125

Query: 165 PEPCTCGPAGPVAASLAPVSATA----------GEDDDDVVGDVLALLAAPLAPGPRAPR 214
                 GP GP+     P  A A          GE  +  V   +     P  PG     
Sbjct: 126 QLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD 185

Query: 215 VEAAFLCRL-RRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAGFYAL 272
            EA    +   R     + A    G   LP  +G  R  PGL+   G+  AP V G    
Sbjct: 186 GEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG-HRGYPGLDGAKGEAGAPGVKG---- 240

Query: 273 AATLHVALGEPPRRGPPRP 291
                   G P   G P P
Sbjct: 241 ------ESGSPGENGSPGP 253



 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 39  SPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLF 98
           +P     R   GP     P  A GE        PAG A  +    ER  +  P  A    
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG 768

Query: 99  VRQSDKGVNGKKRSRGKA-KKLKFGLPGPPGP---PGPQGPPGPIIPPEA 144
              +D G  G K  +G+A +K   G PGP GP   PGPQGP G   P  A
Sbjct: 769 PPGAD-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 817



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE---PEPCTCGPAGPVAA 178
           G PGP GPPGP GP G    P A   + +    GA R  E A+    EP T G  GP  A
Sbjct: 279 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA-RGPEGAQGPRGEPGTPGSPGPAGA 337

Query: 179 SLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
           S  P   T G            +  AP  PGPR P
Sbjct: 338 SGNP--GTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 43/178 (24%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD--------PRDAWMLFVRQ 101
            GP  +  P  A G++ P       GL     P  E+    D        P     L  ++
Sbjct: 852  GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911

Query: 102  SDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---------PPGPIIPPEALLKEFQLL 152
               G+ G++  RG       GLPGP G PG QG         PPGP+ PP          
Sbjct: 912  GIVGLPGQRGERGFP-----GLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--------- 957

Query: 153  LKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210
            L G   +  R E  P   GP G   A  A V    GE            + AP APGP
Sbjct: 958  LTGPAGEPGR-EGSPGADGPPGRDGA--AGVKGDRGE---------TGAVGAPGAPGP 1003



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 32/108 (29%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
            GP  +       G   P   + PAG    Q P   R                 DKG  G+
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG----------------DKGEAGE 1054

Query: 110  KRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP 141
               RG      F    GLPGPPGP G            P+GPPGP+ P
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1102



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
            G  G+    G A     G PG PGPPGP GPPGP I   A
Sbjct: 1119 GPRGRSGETGPA-----GPPGNPGPPGPPGPPGPGIDMSA 1153



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 47   PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
            P   P  +  P  +G    P     P       EP  E +   D         R    GV
Sbjct: 931  PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAAGV 985

Query: 107  NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
             G +   G       G PG PGPPG  GP GP
Sbjct: 986  KGDRGETGAV-----GAPGAPGPPGSPGPAGP 1012



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 17/114 (14%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGE-AEPSEANRPA--GLAVFQEPTAERAHSVDPR 92
           G   P  A+ +P    FP   P  A GE  +  E   P   GL        E   +  P 
Sbjct: 519 GPPGPQGARGQPGVMGFPG--PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPI-IPPEA 144
            A          G  G++  +G      F GLPGPPGPPG  G PG   +P EA
Sbjct: 577 PA----------GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 620



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 39/156 (25%)

Query: 42  SAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAER--AHSVDPRDAWMLFV 99
           SA +R   G    + PP   G A P  A+   G    Q    ++  A +  P+       
Sbjct: 745 SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804

Query: 100 RQSDKGVNGKKRSRGK----------------AKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
            Q   GV G K +RG                       G PGPPGPPGP G  GP     
Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP----- 859

Query: 144 ALLKEFQLLLKGAVRQRERAEP----EPCTCGPAGP 175
                     KGA  + +   P    EP   GPAGP
Sbjct: 860 ----------KGA--RGDSGPPGRAGEPGLQGPAGP 883



 Score = 37.0 bits (84), Expect = 0.028
 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G A P   +   +  P P       G    P E  +P    V  E  A     V PR   
Sbjct: 576 GPAGPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL--VGPR--- 629

Query: 96  MLFVRQSDKGVNGKKRSRGKAKKLKF--GLPGPPGPPGPQGPPGPIIPPEA 144
                  ++G  G++ S G A+ L+   GLPG PG  GP+G  GP  PP A
Sbjct: 630 ------GERGFPGERGSPG-AQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 673



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 35  LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPR-- 92
           +G   P   +  P    FP      AG +  P E   P+GLA  +    +     +P   
Sbjct: 431 VGPIGPPGERGAPGNRGFP-GQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLP 488

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            A  L  R  D G  GK    G   +   G PGPPGP G +G PG
Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGE--DGRPGPPGPQGARGQPG 531



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 50  GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
           GP  PR  P   G   +  EA +P G A  + P   +     P    +  V+   +G  G
Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPGVK-GHRGYPG 225

Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPC 168
              ++G+A     G+ G  G PG  G PGP+ P     +  +    GA   R   + +P 
Sbjct: 226 LDGAKGEAGAP--GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN-DGQPG 282

Query: 169 TCGPAGPVAASLAP 182
             GP GPV  +  P
Sbjct: 283 PAGPPGPVGPAGGP 296



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 33/107 (30%), Positives = 36/107 (33%), Gaps = 19/107 (17%)

Query: 31  GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
           GG  LG          PR  P P   P   G +  P E   P        P   R     
Sbjct: 123 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG----VSGPMGPRGPPGP 178

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           P        +  D G  GK    GKA     G  GPPGP G +G PG
Sbjct: 179 PG-------KPGDDGEAGKP---GKA-----GERGPPGPQGARGFPG 210



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 28/94 (29%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
           G  G PGP GPQG PGP                     +  A  EP   GP GP     A
Sbjct: 399 GPKGEPGPAGPQGAPGP----------------AGEEGKRGARGEPGGVGPIGPPGERGA 442

Query: 182 PVS-ATAGEDDDDVVGDVLALLAAPL-APGPRAP 213
           P +    G+D           LA P  APG R P
Sbjct: 443 PGNRGFPGQDG----------LAGPKGAPGERGP 466



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 51  PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
           P P     + G +  P EA  P  +     P  ER    + R +      Q  +G+ G  
Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVG----PRGERGFPGE-RGSPGAQGLQGPRGLPGTP 656

Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            + G       G  GP GPPG QGPPG
Sbjct: 657 GTDGPK-----GASGPAGPPGAQGPPG 678



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 15/36 (41%)

Query: 122  GLPGPPGPPGPQ---------------GPPGPIIPP 142
            G+PGP GPPGP+               GPPGP  PP
Sbjct: 1110 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1145



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 34/126 (26%)

Query: 57  PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116
           P  A G A P  A  P GL   Q    ER  +                G+ G K  RG  
Sbjct: 661 PKGASGPAGPPGAQGPPGL---QGMPGERGAA----------------GIAGPKGDRGDV 701

Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176
            +   G  G PG  G +G  GPI PP             A    E+ E  P   GPAG  
Sbjct: 702 GEK--GPEGAPGKDGGRGLTGPIGPPGP-----------AGANGEKGEVGP--PGPAGSA 746

Query: 177 AASLAP 182
            A  AP
Sbjct: 747 GARGAP 752



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           G +G K + G A     G PG  GPPG QG PG
Sbjct: 657 GTDGPKGASGPA-----GPPGAQGPPGLQGMPG 684


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 60/184 (32%), Positives = 72/184 (39%), Gaps = 26/184 (14%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTA--ERAHSVDP 91
            G+A P+    RP     P+  P  AG +  P E     PAG    Q P      A  V P
Sbjct: 1096 GAAGPIGIPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGP 1151

Query: 92   RDAWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI-IPPEALLKEF 149
                       DKG  G+   +G K  K + G PGP GP GP G PGP     E   +  
Sbjct: 1152 PG------EDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ 1205

Query: 150  QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
            Q L      +  R  P     GP GPV   L  +    GE  +   GDV   +  P  PG
Sbjct: 1206 QGLFGQKGDEGPRGFP-----GPPGPV--GLQGLPGPPGEKGE--TGDV-GQMGPPGPPG 1255

Query: 210  PRAP 213
            PR P
Sbjct: 1256 PRGP 1259



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 103  DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
            DKG +G+    G       G PGP GPPG +GPPGP   PE    E     KGA +    
Sbjct: 1364 DKGDDGEPGQTGSPGPT--GEPGPSGPPGKRGPPGP-AGPEGRQGE-----KGA-KGEAG 1414

Query: 163  AEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
             E  P   GP GP  A   P     G D    +   +     P +PGP  P
Sbjct: 1415 LEGPPGKTGPIGPQGAPGKP-----GPDGLRGIPGPVGEQGLPGSPGPDGP 1460



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 39/139 (28%)

Query: 36   GSASPMSAKSRP----RCGPFPRSHPPR-AGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
            GS  P+     P      GP  +  PP   G + EP +   P        PT E   S  
Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG-------PTGEPGPSGP 1388

Query: 91   PRDAWMLFV-----RQSDKGVNGKKRSRGKAKKLK----------------FGLPGP--- 126
            P             RQ +KG  G+    G   K                   G+PGP   
Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448

Query: 127  ---PGPPGPQGPPGPIIPP 142
               PG PGP GPPGP+ PP
Sbjct: 1449 QGLPGSPGPDGPPGPMGPP 1467



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 34/104 (32%), Positives = 42/104 (40%), Gaps = 12/104 (11%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSE--ANRPAGLAVFQEPTAERAHSVDPRD 93
            GS  P + +  P   P  R  P  AG E    E  A   AGL    E    +   + P+ 
Sbjct: 1375 GSPGP-TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGL----EGPPGKTGPIGPQG 1429

Query: 94   AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            A         +G+ G    +G       G PGP GPPGP GPPG
Sbjct: 1430 APGKPGPDGLRGIPGPVGEQGLP-----GSPGPDGPPGPMGPPG 1468



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
            + D+G+ G + S G   K + G+ GP GP GP GPPG   PP           KGA    
Sbjct: 1500 KGDRGLPGPQGSSGP--KGEQGITGPSGPIGPPGPPGLPGPPGP---------KGAKGSS 1548

Query: 161  ERAEPE-----PCTCGPAGPVAASLAPVSATA 187
                P+     P   GP GP    + P+   A
Sbjct: 1549 GPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQA 1580



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 53/185 (28%), Positives = 62/185 (33%), Gaps = 49/185 (26%)

Query: 36   GSASPMSAKSRPRCG--PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRD 93
            G   PM  +  P     P  +  P  AG E    +   PAGL     P   R        
Sbjct: 1006 GETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPG-PAGLPGKDGPPGLRGFP----- 1059

Query: 94   AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
                     D+G+ G   + G    LK G  GPPGPPGP G PG   P  A         
Sbjct: 1060 --------GDRGLPGPVGALG----LK-GNEGPPGPPGPAGSPGERGPAGA--------- 1097

Query: 154  KGAVRQRERAEPEPCTCGPAGPVAASLAP----VSATAGEDDDDVVGDVLALLAAPLA-P 208
             G +    R  P+    GP GP     AP        AG D           L  P+  P
Sbjct: 1098 AGPIGIPGRPGPQ----GPPGPAGEKGAPGEKGPQGPAGRDG----------LQGPVGLP 1143

Query: 209  GPRAP 213
            GP  P
Sbjct: 1144 GPAGP 1148



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 38/111 (34%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAE--------RA 86
           G A PM    RP  GP     PP +GG + EP +   P G    Q P           RA
Sbjct: 559 GPAGPMGLTGRP--GPVG---PPGSGGLKGEPGDVG-PQGPRGVQGPPGPAGKPGRRGRA 612

Query: 87  HSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            S   R        + D+G +G     G+  K   G PGP GPPGP G  G
Sbjct: 613 GSDGARGMPGQTGPKGDRGFDGLAGLPGE--KGHRGDPGPSGPPGPPGDDG 661



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 47   PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
            P+  P    +P   G + EP EA  P GL     P   +               + +KG 
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEP-GLPGEGGPPGPKGE-------------RGEKGE 1313

Query: 107  NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
            +G   + G       G  GPPG  GP+G PGP+
Sbjct: 1314 SGPSGAAGPP-----GPKGPPGDDGPKGSPGPV 1341



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 122 GLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEP 167
           GLPG PGP G   P+GPPGP  PP     + Q   KG V    + EP P
Sbjct: 673 GLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNV--GPQGEPGP 719



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 20/99 (20%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
            +  +G+ G+K   G       G PGPPGP G QG PGP  P E          KG     
Sbjct: 1203 RGQQGLFGQKGDEGPR-----GFPGPPGPVGLQGLPGP--PGE----------KGETGDV 1245

Query: 161  ERAEPEPCTCGPAGPVAASLA--PVSATAGEDDDDVVGD 197
             +  P P   GP GP  A  A  P     G  +   VG+
Sbjct: 1246 GQMGP-PGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGE 1283



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 105 GVNGKKRSRGKAKKLKFGL--PGPPGPPGPQGPPGP 138
           G  G+K  +G+   ++ G+   GPPGP GP G PGP
Sbjct: 447 GPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGP 482



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 105  GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
            GV G +   G+   + + G PGPPGPPG QG PG
Sbjct: 997  GVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG 1030



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 15/103 (14%)

Query: 53  PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
           P  HP + G   E      P        P        D      L   + +KG +G    
Sbjct: 761 PPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRG--LKGTKGEKGEDGFPGF 818

Query: 113 RG----KAKKLKFGLPGPPGPPGPQGP---------PGPIIPP 142
           +G    K  + + G PGP G  GP+GP         PGP+ PP
Sbjct: 819 KGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPP 861



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 8/34 (23%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           G NG+K  RG         PG PGP G +GP GP
Sbjct: 892 GANGEKGGRGT--------PGKPGPRGQRGPTGP 917



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 105  GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIP 141
            G+ G    RG+   + K G PGPPG  GPQGP G   P
Sbjct: 973  GLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGP 1010



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 105 GVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGPI 139
           G NG     G   +K K G+PG PG PG QGP G I
Sbjct: 850 GPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI 885



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 17/53 (32%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPGPQ---------------GPPGPIIPP 142
            G  G+K   G+A +   GLPG  GPPGP+               GPPGP  PP
Sbjct: 1279 GAVGEKGEPGEAGEP--GLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 10/45 (22%)

Query: 104 KGVNGKKRSRGKA----------KKLKFGLPGPPGPPGPQGPPGP 138
           +G+ GK   +G +          ++   G  GP G PGP+GPPGP
Sbjct: 924 RGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGP 968



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           G  G+K   GK      GLPG PG  GP G PG   PP
Sbjct: 739 GPPGEKGPLGKP-----GLPGMPGADGPPGHPGKEGPP 771



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPG PG +GPPG
Sbjct: 757 GADGPPGHPGKEGPPG 772



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
           ++ +  L GP GP G  G PGP+ PP
Sbjct: 551 QQARLALRGPAGPMGLTGRPGPVGPP 576



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 958 GFPGPKGPPGPPGKDG 973



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)

Query: 125 GPPGPPGPQGPPGPIIPP 142
           GP GP G QGPPGP   P
Sbjct: 589 GPQGPRGVQGPPGPAGKP 606



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           Q + G  G++ + G       GLPGP G  GP G  GP+  P
Sbjct: 714 QGEPGPPGQQGNPGAQ-----GLPGPQGAIGPPGEKGPLGKP 750



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 101 QSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPG 137
           + D+G  G    RG+   +   G  GP G PGP GPPG
Sbjct: 825 KGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPG 862



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           ++G NG +   G       G  GPPGPPG  G PG
Sbjct: 947 ERGPNGPQGPTGFP-----GPKGPPGPPGKDGLPG 976



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
           GL G PG  GPQGP G   PP
Sbjct: 580 GLKGEPGDVGPQGPRGVQGPP 600



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           G++G+   +G       G  G PGPPG QG PG
Sbjct: 700 GMDGQPGPKGNV-----GPQGEPGPPGQQGNPG 727



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 122 GLPGPP---GPPGPQGPPGPIIPP 142
           GLPGPP   GP G  G PG   PP
Sbjct: 478 GLPGPPGTMGPTGQVGDPGERGPP 501



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 11/44 (25%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGP---------PGPQGPPGP 138
            KG +G K  +G    +  GL GPPG          PGPQG  GP
Sbjct: 1473 KGDSGPKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSSGP 1514


>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
          Length = 1016

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 50/155 (32%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
           G  GPPGPPG QGPPGP  PP +  K+ Q   +G +             GP GP      
Sbjct: 817 GEAGPPGPPGLQGPPGPAGPPGSPGKDGQ---EGPI-------------GPPGP------ 854

Query: 182 PVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYY 241
                  + +  V G       AP AP P+     A  L R     +   R L   G YY
Sbjct: 855 -------QGEQGVEG-------APAAPVPQVAFSAALSLPRSEPGTVPFDRVLLNDGGYY 900

Query: 242 LPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATL 276
            P+              +G + AP+AG Y L+A L
Sbjct: 901 DPE--------------TGVFTAPLAGRYLLSAVL 921



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 12/18 (66%), Positives = 12/18 (66%)

Query: 120 KFGLPGPPGPPGPQGPPG 137
           K G  GP GPPGPQG  G
Sbjct: 842 KDGQEGPIGPPGPQGEQG 859


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
            GS  P+    RP     P+  P  AG +  P E     P G    Q P      +  P  
Sbjct: 938  GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 993

Query: 94   AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149
            A        DKG  G    +G K  K + G PGPPGP GP G PG       P A   + 
Sbjct: 994  AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1049

Query: 150  QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
                KG    R          GP GP+   L  +   +GE  +   GDV   +  P  PG
Sbjct: 1050 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1097

Query: 210  PRAP 213
            PR P
Sbjct: 1098 PRGP 1101



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
            GP     PP   G A P+ A+ P G               +P ++    + Q + GV G 
Sbjct: 1088 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1146

Query: 110  KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            +  RG+  K + G PG PGPPGP+GP G
Sbjct: 1147 RGERGE--KGESGQPGEPGPPGPKGPTG 1172



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 50   GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
            GP  P   P  AG + EP  A  P G    +     R  +  P    +    Q   G +G
Sbjct: 1025 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1079

Query: 109  KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            +K   G       G  GPPGPPGP+GP GP
Sbjct: 1080 EKGETGDV-----GPMGPPGPPGPRGPAGP 1104



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 58  PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
           P A GE      +  +G    + PT  R     PR A     +   KG +G     G   
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 788

Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138
           +   GLPGP GP   PGP+GPPGP
Sbjct: 789 ER--GLPGPQGPNGFPGPKGPPGP 810



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
            G   P   +  P  G   +   P A G+A P     P GL   +     +     P    
Sbjct: 1274 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1331

Query: 96   MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            ++        + D+G+ G + S G+  K + G+PG  GP GP GPPG
Sbjct: 1332 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1376



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
            +G +G K  RG+  +   G PG PGP G  GPPGP+
Sbjct: 1198 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1231



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155
            +   G  G   S G+      G P GPPG PGPQGPPG      +P E          KG
Sbjct: 919  EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 968

Query: 156  AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197
             +    R+  +      GPAGP           AGED D   VGD
Sbjct: 969  PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 1005



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
           GV G + + G+   + + G PGPPGPPG QG PG
Sbjct: 839 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 872



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 56  HPPRAGGEAEPSEANRPAGLAV-FQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
           H  +   + +PS  +RP       Q+PT      +    + +  + ++  G  G K  +G
Sbjct: 242 HRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEI-LESSLLPPLEEAAHGPRGLKGEKG 300

Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           +   L+ G+    GPPGP+GP G I PP
Sbjct: 301 EPAVLEPGML-VEGPPGPEGPAGLIGPP 327



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 62  GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121
           G   P     P G A    P  ER H   P         Q   G  GK+ ++G       
Sbjct: 833 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 882

Query: 122 GLPGPPGPPGPQGPPG 137
             PGPPG PG  GP G
Sbjct: 883 --PGPPGAPGKDGPAG 896



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           G +G+K  +GK      GLPG PG  GP G PG   PP
Sbjct: 581 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 613



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90
           G   PM    RP  GP  +   P   GE+    P     P GL         R  +    
Sbjct: 401 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 458

Query: 91  ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
               P D  +   R  D   G+ G+K  RG       GLPGPPG  G +G  G I P
Sbjct: 459 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 513



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 57   PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
            PP  G + EP E+  P   G    + P  ER    +         +  + G  G K   G
Sbjct: 1122 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1172

Query: 115  ----KAKKLKFGLPGPPGPPGPQGPPG 137
                K      G PG PGPPG  GP G
Sbjct: 1173 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1199



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
           +G+ G+   RG    K   G+PGPPG  G  GP GP
Sbjct: 514 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 549



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139
           +K K G+PG PG PG QGP G +
Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSL 727



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%)

Query: 58   PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
            P   G   P+  N P G      P  +R  +  P        RQ  KG  G   + G   
Sbjct: 1213 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1262

Query: 118  KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142
            K    G  GP G PGP G                     PPGP+ PP
Sbjct: 1263 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1309



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%)

Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
           G+ G    RG+   + K G PGPPG  GPQG  G   P                   ER 
Sbjct: 815 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 857

Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            P     GP GP      P   TAG+  +   GD       P APG   P
Sbjct: 858 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 894



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 53   PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
            PR      G   +P E   P      + PT +     +P           D G  G+   
Sbjct: 1146 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1197

Query: 113  RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165
            RG+   K   G  G PG PG  GP G   PP  L K       G+  ++     + +P  
Sbjct: 1198 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1257

Query: 166  --EPCTCGPAGPVAASLAP 182
               P   GP GP   +  P
Sbjct: 1258 IGAPGKTGPVGPAGPAGKP 1276



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           GV G    +G    L  G  G PGPPG QG PG
Sbjct: 539 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 569



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 800 GFPGPKGPPGPPGKDG 815



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
           ++ +  L GPPGP G  G PGP+  P
Sbjct: 393 QQARLALRGPPGPMGYTGRPGPLGQP 418



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 122  GLPGPPGPPGPQGPPGPIIPP 142
            G  G  GPPG  GPPG +I P
Sbjct: 1397 GEKGVQGPPGHPGPPGEVIQP 1417



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP G PG +GPPG
Sbjct: 331 GNPGPVGDPGERGPPG 346



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142
           G  GP GPPGP G P         GPI PP
Sbjct: 917 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 946



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPGPPG  G PG
Sbjct: 803 GPKGPPGPPGKDGLPG 818



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)

Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142
           GLPG  GP G   P+GPPG   PP
Sbjct: 515 GLPGESGPRGLLGPKGPPGIPGPP 538



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           Q + G  G++ + G       GLPGP G  GP G  GP
Sbjct: 556 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 588



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
           + D+G  G   SRG+         GP GP G  GP G   PP  + ++ +L + G     
Sbjct: 667 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 718

Query: 161 ERAEPEPCTCGPAGPVAA 178
            R  P+     P  P A+
Sbjct: 719 GRQGPKGSLGFPGFPGAS 736


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
            GS  P+    RP     P+  P  AG +  P E     P G    Q P      +  P  
Sbjct: 917  GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 972

Query: 94   AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149
            A        DKG  G    +G K  K + G PGPPGP GP G PG       P A   + 
Sbjct: 973  AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1028

Query: 150  QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
                KG    R          GP GP+   L  +   +GE  +   GDV   +  P  PG
Sbjct: 1029 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1076

Query: 210  PRAP 213
            PR P
Sbjct: 1077 PRGP 1080



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
            GP     PP   G A P+ A+ P G               +P ++    + Q + GV G 
Sbjct: 1067 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1125

Query: 110  KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            +  RG+  K + G PG PGPPGP+GP G
Sbjct: 1126 RGERGE--KGESGQPGEPGPPGPKGPTG 1151



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 50   GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
            GP  P   P  AG + EP  A  P G    +     R  +  P    +    Q   G +G
Sbjct: 1004 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1058

Query: 109  KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            +K   G       G  GPPGPPGP+GP GP
Sbjct: 1059 EKGETGDV-----GPMGPPGPPGPRGPAGP 1083



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 22/87 (25%)

Query: 56  HPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK 115
           H  +   + +PS  +RP      QEP ++ AH                 G  G K  +G+
Sbjct: 242 HRAQRSPQQQPSRLHRPQN----QEPQSQAAH-----------------GPRGLKGEKGE 280

Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPP 142
              L+ G+    GPPGP+GP G I PP
Sbjct: 281 PAVLEPGML-VEGPPGPEGPAGLIGPP 306



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 58  PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
           P A GE      +  +G    + PT  R     PR A     +   KG +G     G   
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 767

Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138
           +   GLPGP GP   PGP+GPPGP
Sbjct: 768 ER--GLPGPQGPNGFPGPKGPPGP 789



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
            G   P   +  P  G   +   P A G+A P     P GL   +     +     P    
Sbjct: 1253 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1310

Query: 96   MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            ++        + D+G+ G + S G+  K + G+PG  GP GP GPPG
Sbjct: 1311 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1355



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
            +G +G K  RG+  +   G PG PGP G  GPPGP+
Sbjct: 1177 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1210



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155
           +   G  G   S G+      G P GPPG PGPQGPPG      +P E          KG
Sbjct: 898 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 947

Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197
            +    R+  +      GPAGP           AGED D   VGD
Sbjct: 948 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 984



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
           GV G + + G+   + + G PGPPGPPG QG PG
Sbjct: 818 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 851



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 62  GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121
           G   P     P G A    P  ER H   P         Q   G  GK+ ++G       
Sbjct: 812 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 861

Query: 122 GLPGPPGPPGPQGPPG 137
             PGPPG PG  GP G
Sbjct: 862 --PGPPGAPGKDGPAG 875



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           G +G+K  +GK      GLPG PG  GP G PG   PP
Sbjct: 560 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 592



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90
           G   PM    RP  GP  +   P   GE+    P     P GL         R  +    
Sbjct: 380 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 437

Query: 91  ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
               P D  +   R  D   G+ G+K  RG       GLPGPPG  G +G  G I P
Sbjct: 438 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 492



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 57   PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
            PP  G + EP E+  P   G    + P  ER    +         +  + G  G K   G
Sbjct: 1101 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1151

Query: 115  ----KAKKLKFGLPGPPGPPGPQGPPG 137
                K      G PG PGPPG  GP G
Sbjct: 1152 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1178



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
           +G+ G+   RG    K   G+PGPPG  G  GP GP
Sbjct: 493 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 528



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139
           +K K G+PG PG PG QGP G +
Sbjct: 684 EKGKLGVPGLPGYPGRQGPKGSL 706



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%)

Query: 58   PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
            P   G   P+  N P G      P  +R  +  P        RQ  KG  G   + G   
Sbjct: 1192 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1241

Query: 118  KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142
            K    G  GP G PGP G                     PPGP+ PP
Sbjct: 1242 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1288



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%)

Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
           G+ G    RG+   + K G PGPPG  GPQG  G   P                   ER 
Sbjct: 794 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 836

Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            P     GP GP      P   TAG+  +   GD       P APG   P
Sbjct: 837 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 873



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 53   PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
            PR      G   +P E   P      + PT +     +P           D G  G+   
Sbjct: 1125 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1176

Query: 113  RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165
            RG+   K   G  G PG PG  GP G   PP  L K       G+  ++     + +P  
Sbjct: 1177 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1236

Query: 166  --EPCTCGPAGPVAASLAP 182
               P   GP GP   +  P
Sbjct: 1237 IGAPGKTGPVGPAGPAGKP 1255



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           GV G    +G    L  G  G PGPPG QG PG
Sbjct: 518 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 548



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 779 GFPGPKGPPGPPGKDG 794



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
           ++ +  L GPPGP G  G PGP+  P
Sbjct: 372 QQARLALRGPPGPMGYTGRPGPLGQP 397



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 122  GLPGPPGPPGPQGPPGPIIPP 142
            G  G  GPPG  GPPG +I P
Sbjct: 1376 GEKGVQGPPGHPGPPGEVIQP 1396



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142
           G  GP GPPGP G P         GPI PP
Sbjct: 896 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 925



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPGPPG  G PG
Sbjct: 782 GPKGPPGPPGKDGLPG 797



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)

Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142
           GLPG  GP G   P+GPPG   PP
Sbjct: 494 GLPGESGPRGLLGPKGPPGIPGPP 517



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           Q + G  G++ + G       GLPGP G  GP G  GP
Sbjct: 535 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 567



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
           + D+G  G   SRG+         GP GP G  GP G   PP  + ++ +L + G     
Sbjct: 646 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 697

Query: 161 ERAEPEPCTCGPAGPVAA 178
            R  P+     P  P A+
Sbjct: 698 GRQGPKGSLGFPGFPGAS 715


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
            GS  P+    RP     P+  P  AG +  P E     P G    Q P      +  P  
Sbjct: 1024 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 1079

Query: 94   AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149
            A        DKG  G    +G K  K + G PGPPGP GP G PG       P A   + 
Sbjct: 1080 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1135

Query: 150  QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
                KG    R          GP GP+   L  +   +GE  +   GDV   +  P  PG
Sbjct: 1136 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1183

Query: 210  PRAP 213
            PR P
Sbjct: 1184 PRGP 1187



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 50   GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
            GP     PP   G A P+ A+ P G               +P ++    + Q + GV G 
Sbjct: 1174 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1232

Query: 110  KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            +  RG+  K + G PG PGPPGP+GP G
Sbjct: 1233 RGERGE--KGESGQPGEPGPPGPKGPTG 1258



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 50   GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
            GP  P   P  AG + EP  A  P G    +     R  +  P    +    Q   G +G
Sbjct: 1111 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1165

Query: 109  KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            +K   G       G  GPPGPPGP+GP GP
Sbjct: 1166 EKGETGDV-----GPMGPPGPPGPRGPAGP 1190



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 58  PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
           P A GE      +  +G    + PT  R     PR A     +   KG +G     G   
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 874

Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138
           +   GLPGP GP   PGP+GPPGP
Sbjct: 875 ER--GLPGPQGPNGFPGPKGPPGP 896



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
            G   P   +  P  G   +   P A G+A P     P GL   +     +     P    
Sbjct: 1360 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1417

Query: 96   MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            ++        + D+G+ G + S G+  K + G+PG  GP GP GPPG
Sbjct: 1418 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1462



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
            +G +G K  RG+  +   G PG PGP G  GPPGP+
Sbjct: 1284 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1317



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155
            +   G  G   S G+      G P GPPG PGPQGPPG      +P E          KG
Sbjct: 1005 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 1054

Query: 156  AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197
             +    R+  +      GPAGP           AGED D   VGD
Sbjct: 1055 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 1091



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137
           GV G + + G+   + + G PGPPGPPG QG PG
Sbjct: 925 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 958



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%)

Query: 62  GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121
           G   P     P G A    P  ER H   P         Q   G  GK+ ++G       
Sbjct: 919 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 968

Query: 122 GLPGPPGPPGPQGPPG 137
             PGPPG PG  GP G
Sbjct: 969 --PGPPGAPGKDGPAG 982



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           G +G+K  +GK      GLPG PG  GP G PG   PP
Sbjct: 667 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 699



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90
           G   PM    RP  GP  +   P   GE+    P     P GL         R  +    
Sbjct: 487 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 544

Query: 91  ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
               P D  +   R  D   G+ G+K  RG       GLPGPPG  G +G  G I P
Sbjct: 545 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 599



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           G  G K  +G+   L+ G+    GPPGP+GP G I PP
Sbjct: 377 GPRGLKGEKGEPAVLEPGML-VEGPPGPEGPAGLIGPP 413



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 57   PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
            PP  G + EP E+  P   G    + P  ER    +         +  + G  G K   G
Sbjct: 1208 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1258

Query: 115  ----KAKKLKFGLPGPPGPPGPQGPPG 137
                K      G PG PGPPG  GP G
Sbjct: 1259 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1285



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
           +G+ G+   RG    K   G+PGPPG  G  GP GP
Sbjct: 600 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 635



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139
           +K K G+PG PG PG QGP G +
Sbjct: 791 EKGKLGVPGLPGYPGRQGPKGSL 813



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%)

Query: 58   PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
            P   G   P+  N P G      P  +R  +  P        RQ  KG  G   + G   
Sbjct: 1299 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1348

Query: 118  KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142
            K    G  GP G PGP G                     PPGP+ PP
Sbjct: 1349 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1395



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%)

Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
           G+ G    RG+   + K G PGPPG  GPQG  G   P                   ER 
Sbjct: 901 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 943

Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            P     GP GP      P   TAG+  +   GD       P APG   P
Sbjct: 944 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 980



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 53   PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
            PR      G   +P E   P      + PT +     +P           D G  G+   
Sbjct: 1232 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1283

Query: 113  RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165
            RG+   K   G  G PG PG  GP G   PP  L K       G+  ++     + +P  
Sbjct: 1284 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1343

Query: 166  --EPCTCGPAGPVAASLAP 182
               P   GP GP   +  P
Sbjct: 1344 IGAPGKTGPVGPAGPAGKP 1362



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           GV G    +G    L  G  G PGPPG QG PG
Sbjct: 625 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 655



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 886 GFPGPKGPPGPPGKDG 901



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142
           ++ +  L GPPGP G  G PGP+  P
Sbjct: 479 QQARLALRGPPGPMGYTGRPGPLGQP 504



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 122  GLPGPPGPPGPQGPPGPIIPP 142
            G  G  GPPG  GPPG +I P
Sbjct: 1483 GEKGVQGPPGHPGPPGEVIQP 1503



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP G PG +GPPG
Sbjct: 417 GNPGPVGDPGERGPPG 432



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 122  GLPGPPGPPGPQGPP---------GPIIPP 142
            G  GP GPPGP G P         GPI PP
Sbjct: 1003 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 1032



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPGPPG  G PG
Sbjct: 889 GPKGPPGPPGKDGLPG 904



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)

Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142
           GLPG  GP G   P+GPPG   PP
Sbjct: 601 GLPGESGPRGLLGPKGPPGIPGPP 624



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           Q + G  G++ + G       GLPGP G  GP G  GP
Sbjct: 642 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 674



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
           + D+G  G   SRG+         GP GP G  GP G   PP  + ++ +L + G     
Sbjct: 753 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 804

Query: 161 ERAEPEPCTCGPAGPVAA 178
            R  P+     P  P A+
Sbjct: 805 GRQGPKGSLGFPGFPGAS 822


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 20/41 (48%), Positives = 25/41 (60%)

Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPII 140
           R    G+NG K ++G    +  G PG PGPPGP GPPG +I
Sbjct: 910 RPGRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVI 950



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 57  PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG-K 115
           PP + GE  P+    P G         E    VD   A  L   + +KG  G   S G K
Sbjct: 644 PPGSPGEDGPAGEPGPPG--------PEGQPGVD--GATGLPGMKGEKGARGPNGSVGEK 693

Query: 116 AKKLKFGLPGPP------GPPGPQGPPGPIIPP 142
                 GLPGPP      GPPG  GPPGP  PP
Sbjct: 694 GDPGNRGLPGPPGKKGQAGPPGVMGPPGPPGPP 726



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           ++G+ G    +G+A     G+ GPPGPPGP GPPGP
Sbjct: 698 NRGLPGPPGKKGQAGPP--GVMGPPGPPGPPGPPGP 731



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/18 (83%), Positives = 15/18 (83%)

Query: 121  FGLPGPPGPPGPQGPPGP 138
            FG PG PGPPGP GPPGP
Sbjct: 1089 FGRPGDPGPPGPPGPPGP 1106



 Score = 38.1 bits (87), Expect = 0.013
 Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 5/29 (17%)

Query: 122  GLPGPPG-----PPGPQGPPGPIIPPEAL 145
            GLPGPPG      PGP GPPGP  PP  L
Sbjct: 1082 GLPGPPGFGRPGDPGPPGPPGPPGPPAIL 1110



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 29/85 (34%)

Query: 97  LFVRQSDKGVNGKKRSRGK----AKKLKFGLPGPP--------------------GPPGP 132
           L  ++ + G++G     G       K +FGLPG P                    GPPG 
Sbjct: 877 LMGKKGEPGMHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGTKGDPGVIMQGPPGL 936

Query: 133 QGPPGPIIPPEALLKEFQLLLKGAV 157
            GPPGP  PP A++      +KGA+
Sbjct: 937 PGPPGPPGPPGAVIN-----IKGAI 956



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 128 GPPGPQGPPGPI--IPPEALLKEFQ---LLLKGAVRQR-------ERAEPEPCTCGPAGP 175
           G P P GPP P+  + PE  +   Q   + +KG    +       E     P   GP GP
Sbjct: 527 GSPPPDGPPLPLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGP 586

Query: 176 VAASLAPVS-----ATAGEDDDDVVGDVLALLAAPLAPGP 210
            A + A  S     +  G    D+VG    L   P  PGP
Sbjct: 587 TAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGP 626



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 93  DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP 135
           + W+   ++   G+ G+   +G+       LPGPP P GP GP
Sbjct: 544 ERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGP 586



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPP--GPPGPQGPPGPI 139
           G+ G+K  RG   K + G+ G    GPPGP+GPPG I
Sbjct: 764 GLKGEKGDRGP--KGERGMDGASIVGPPGPRGPPGHI 798



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 115  KAKKLKFGLPGPPGPPGPQGPPGPIIPP--EALLKEFQLLLKG 155
            K +K  +GLPG  G  G QG  GP  PP   A L+ F   LKG
Sbjct: 986  KGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKG 1028



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 98   FVRQSDKGVNGKKRSRGKAKKL--KFGLPGPPGPPGPQGPPG 137
            F R  D G  G     G    L     LPGPPGPPG  G PG
Sbjct: 1089 FGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPG 1130



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 116 AKKLKFGLPGPPGPPGPQGPPG 137
           +++L  G PGPPGPPG  G PG
Sbjct: 613 SEQLLRGPPGPPGPPGLPGIPG 634



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 122 GLPGPPGPPGPQGPPG 137
           GLPG PG PGP+GP G
Sbjct: 829 GLPGLPGFPGPRGPKG 844



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPG 131
           + +KG  G K  RG       G PGP GPPG
Sbjct: 766 KGEKGDRGPKGERGMDGASIVGPPGPRGPPG 796



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PG PG  GP G PGP
Sbjct: 643 GPPGSPGEDGPAGEPGP 659



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 27/93 (29%)

Query: 122 GLPGPPGPPGPQGPPG-PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180
           GLPG PGP GP+G  G P  P           LKG   Q E+ EP        G +    
Sbjct: 832 GLPGFPGPRGPKGDTGLPGFPG----------LKG--EQGEKGEP--------GAILTED 871

Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            P+    G+  +        +  AP   GP+ P
Sbjct: 872 IPLERLMGKKGEP------GMHGAPGPMGPKGP 898


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 100  RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138
            R    G+NG K  +G+     L FG+ G PGPPGP GPPGP
Sbjct: 1225 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 1265



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 101  QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157
            + D+G  G+K  RG+     F    LPGPPGPPGP+G PG               + G  
Sbjct: 1327 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 1371

Query: 158  RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
             +  R +P P   GP GP          P             G     ++ P  PGP  P
Sbjct: 1372 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%)

Query: 32  GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84
           G  LG A  +      A  +PR   P P + PP AGG + E S +             A+
Sbjct: 667 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 726

Query: 85  RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142
                D    W   VR       G +   G  K  K G PG PGPPG  GPPG P +P P
Sbjct: 727 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 780

Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188
             L                     PC   P GP   +L  V    G
Sbjct: 781 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 805



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 101  QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141
            +  KG  G   +RG++      G  GPPGPPGP GPPGP +P
Sbjct: 982  KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 1023



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 14/16 (87%), Positives = 15/16 (93%)

Query: 122 GLPGPPGPPGPQGPPG 137
           GLPGPPGPPG +GPPG
Sbjct: 950 GLPGPPGPPGREGPPG 965



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132
            + D+G  G+K   GK    + GLPGPPGPPGP
Sbjct: 1095 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 1126



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
            Q  KG  G +  +G   K   G PG PGPP   GPPGP++        +     G+V   
Sbjct: 1092 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 1140

Query: 161  ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215
               E  P      GPAGP     S     +   + +    G + +     L P  +  + 
Sbjct: 1141 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 1200

Query: 216  EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270
            E  F                  G Y  P  +G      R G PG+N   G+   P  G  
Sbjct: 1201 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 1244

Query: 271  ALAATLHVALGEPPRRGPPRP 291
            +L   +    G P   GPP P
Sbjct: 1245 SLGFGMRGMPGPPGPPGPPGP 1265



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 13/15 (86%), Positives = 14/15 (93%)

Query: 123  LPGPPGPPGPQGPPG 137
            +PGPPGPPGP GPPG
Sbjct: 1420 VPGPPGPPGPPGPPG 1434



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%)

Query: 35  LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
           LG A P +     P+  P P      P R G   +P E  +P         T  +     
Sbjct: 790 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 842

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           P D           G  G K   G  ++      GPPGP GP GPPGP
Sbjct: 843 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 874



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 122  GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179
            G PG PG PGP GPPG   PP    ++  L   GA   +  +  P     GPAG    S 
Sbjct: 944  GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 998

Query: 180  LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219
            LA     AG                P  PGP  P + A F
Sbjct: 999  LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 1026



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 13/15 (86%), Positives = 13/15 (86%)

Query: 124  PGPPGPPGPQGPPGP 138
            PGPPG PG QGPPGP
Sbjct: 1282 PGPPGLPGNQGPPGP 1296



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%)

Query: 122  GLPGPPGPP-------------GPQGPPGPIIPP 142
            G PGPPGPP             GP GPPGP  PP
Sbjct: 1400 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1433



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%)

Query: 122  GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166
            GLPG  GPPGP+G  G + PP             EA +K  +     A ++ ER EP   
Sbjct: 1286 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1345

Query: 167  -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
                   P   GP GP      P     G   + + G        P  PGP+ P
Sbjct: 1346 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 1387



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%)

Query: 36   GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90
            G+  P  A+        P  + PP   G   P     PAG    +    P    A S D 
Sbjct: 986  GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 1045

Query: 91   PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150
            P+    L   + D GV G   ++G+      G+PG PG PG +G  GP  P         
Sbjct: 1046 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 1094

Query: 151  LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203
               KG    R E+ +P      +P   GP GP      PV   + +D     G VL++  
Sbjct: 1095 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 1140

Query: 204  APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263
                PGP      A F           +  L   G    P  +G   +G       G   
Sbjct: 1141 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 1184

Query: 264  APVAGFYALAATLHVALGEPPRRGPPRP 291
            +P  G  AL      A GEP  RGPP P
Sbjct: 1185 SPDGG--ALGPAQKGAKGEPGFRGPPGP 1210



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGPPGPPG  G PG
Sbjct: 903 GFPGPPGPPGVPGLPG 918



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122  GLPGPPGPPGPQGPPG 137
            G PGPPGPPGP G  G
Sbjct: 1422 GPPGPPGPPGPPGTMG 1437



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
           G  G PG PG  G PG       P  P +   K      KG     ER  P P   GP G
Sbjct: 817 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 870

Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213
           P   S      T  + +    G  L  L  P   PGP  P
Sbjct: 871 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 910



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143
           L GP G PGP GPPG P +P E
Sbjct: 898 LRGPRGFPGPPGPPGVPGLPGE 919



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%)

Query: 102  SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129
            + KG  G+   RG          K + G PG P                         G 
Sbjct: 1194 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 1253

Query: 130  PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178
            PGP GPPGP  PP   + +  +    A   R      P   GP GP  A
Sbjct: 1254 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 1299


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138
           R    G+NG K  +G+     L FG+ G PGPPGP GPPGP
Sbjct: 810 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 850



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 101  QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157
            + D+G  G+K  RG+     F    LPGPPGPPGP+G PG               + G  
Sbjct: 912  KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 956

Query: 158  RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
             +  R +P P   GP GP          P             G     ++ P  PGP  P
Sbjct: 957  GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%)

Query: 32  GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84
           G  LG A  +      A  +PR   P P + PP AGG + E S +             A+
Sbjct: 252 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 311

Query: 85  RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142
                D    W   VR       G +   G  K  K G PG PGPPG  GPPG P +P P
Sbjct: 312 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 365

Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188
             L                     PC   P GP   +L  V    G
Sbjct: 366 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 390



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141
           +  KG  G   +RG++      G  GPPGPPGP GPPGP +P
Sbjct: 567 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 608



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 14/16 (87%), Positives = 15/16 (93%)

Query: 122 GLPGPPGPPGPQGPPG 137
           GLPGPPGPPG +GPPG
Sbjct: 535 GLPGPPGPPGREGPPG 550



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132
           + D+G  G+K   GK    + GLPGPPGPPGP
Sbjct: 680 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 711



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
           Q  KG  G +  +G   K   G PG PGPP   GPPGP++        +     G+V   
Sbjct: 677 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 725

Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215
              E  P      GPAGP     S     +   + +    G + +     L P  +  + 
Sbjct: 726 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 785

Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270
           E  F                  G Y  P  +G      R G PG+N   G+   P  G  
Sbjct: 786 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 829

Query: 271 ALAATLHVALGEPPRRGPPRP 291
           +L   +    G P   GPP P
Sbjct: 830 SLGFGMRGMPGPPGPPGPPGP 850



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 13/15 (86%), Positives = 14/15 (93%)

Query: 123  LPGPPGPPGPQGPPG 137
            +PGPPGPPGP GPPG
Sbjct: 1005 VPGPPGPPGPPGPPG 1019



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%)

Query: 35  LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
           LG A P +     P+  P P      P R G   +P E  +P         T  +     
Sbjct: 375 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 427

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           P D           G  G K   G  ++      GPPGP GP GPPGP
Sbjct: 428 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 459



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179
           G PG PG PGP GPPG   PP    ++  L   GA   +  +  P     GPAG    S 
Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 583

Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219
           LA     AG                P  PGP  P + A F
Sbjct: 584 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 611



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 13/15 (86%), Positives = 13/15 (86%)

Query: 124 PGPPGPPGPQGPPGP 138
           PGPPG PG QGPPGP
Sbjct: 867 PGPPGLPGNQGPPGP 881



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%)

Query: 122  GLPGPPGPP-------------GPQGPPGPIIPP 142
            G PGPPGPP             GP GPPGP  PP
Sbjct: 985  GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1018



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%)

Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166
           GLPG  GPPGP+G  G + PP             EA +K  +     A ++ ER EP   
Sbjct: 871 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 930

Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
                  P   GP GP      P     G   + + G        P  PGP+ P
Sbjct: 931 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 972



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%)

Query: 36  GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90
           G+  P  A+        P  + PP   G   P     PAG    +    P    A S D 
Sbjct: 571 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 630

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150
           P+    L   + D GV G   ++G+      G+PG PG PG +G  GP  P         
Sbjct: 631 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 679

Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203
              KG    R E+ +P      +P   GP GP      PV   + +D     G VL++  
Sbjct: 680 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 725

Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263
               PGP      A F           +  L   G    P  +G   +G       G   
Sbjct: 726 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 769

Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291
           +P  G  AL      A GEP  RGPP P
Sbjct: 770 SPDGG--ALGPAQKGAKGEPGFRGPPGP 795



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGPPGPPG  G PG
Sbjct: 488 GFPGPPGPPGVPGLPG 503



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122  GLPGPPGPPGPQGPPG 137
            G PGPPGPPGP G  G
Sbjct: 1007 GPPGPPGPPGPPGTMG 1022



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
           G  G PG PG  G PG       P  P +   K      KG     ER  P P   GP G
Sbjct: 402 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 455

Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213
           P   S      T  + +    G  L  L  P   PGP  P
Sbjct: 456 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 495



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143
           L GP G PGP GPPG P +P E
Sbjct: 483 LRGPRGFPGPPGPPGVPGLPGE 504



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%)

Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129
           + KG  G+   RG          K + G PG P                         G 
Sbjct: 779 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 838

Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178
           PGP GPPGP  PP   + +  +    A   R      P   GP GP  A
Sbjct: 839 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 884


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
            sapiens]
          Length = 1516

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 100  RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138
            R    G+NG K  +G+     L FG+ G PGPPGP GPPGP
Sbjct: 990  RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 1030



 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 101  QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157
            + D+G  G+K  RG+     F    LPGPPGPPGP+G PG               + G  
Sbjct: 1092 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 1136

Query: 158  RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
             +  R +P P   GP GP          P             G     ++ P  PGP  P
Sbjct: 1137 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%)

Query: 32  GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84
           G  LG A  +      A  +PR   P P + PP AGG + E S +             A+
Sbjct: 432 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 491

Query: 85  RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142
                D    W   VR       G +   G  K  K G PG PGPPG  GPPG P +P P
Sbjct: 492 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 545

Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188
             L                     PC   P GP   +L  V    G
Sbjct: 546 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 570



 Score = 42.0 bits (97), Expect = 9e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141
           +  KG  G   +RG++      G  GPPGPPGP GPPGP +P
Sbjct: 747 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 788



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 14/16 (87%), Positives = 15/16 (93%)

Query: 122 GLPGPPGPPGPQGPPG 137
           GLPGPPGPPG +GPPG
Sbjct: 715 GLPGPPGPPGREGPPG 730



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132
           + D+G  G+K   GK    + GLPGPPGPPGP
Sbjct: 860 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 891



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160
            Q  KG  G +  +G   K   G PG PGPP   GPPGP++        +     G+V   
Sbjct: 857  QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 905

Query: 161  ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215
               E  P      GPAGP     S     +   + +    G + +     L P  +  + 
Sbjct: 906  PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 965

Query: 216  EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270
            E  F                  G Y  P  +G      R G PG+N   G+   P  G  
Sbjct: 966  EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 1009

Query: 271  ALAATLHVALGEPPRRGPPRP 291
            +L   +    G P   GPP P
Sbjct: 1010 SLGFGMRGMPGPPGPPGPPGP 1030



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 13/15 (86%), Positives = 14/15 (93%)

Query: 123  LPGPPGPPGPQGPPG 137
            +PGPPGPPGP GPPG
Sbjct: 1185 VPGPPGPPGPPGPPG 1199



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%)

Query: 35  LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90
           LG A P +     P+  P P      P R G   +P E  +P         T  +     
Sbjct: 555 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 607

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           P D           G  G K   G  ++      GPPGP GP GPPGP
Sbjct: 608 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 639



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179
           G PG PG PGP GPPG   PP    ++  L   GA   +  +  P     GPAG    S 
Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 763

Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219
           LA     AG                P  PGP  P + A F
Sbjct: 764 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 791



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 13/15 (86%), Positives = 13/15 (86%)

Query: 124  PGPPGPPGPQGPPGP 138
            PGPPG PG QGPPGP
Sbjct: 1047 PGPPGLPGNQGPPGP 1061



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%)

Query: 122  GLPGPPGPP-------------GPQGPPGPIIPP 142
            G PGPPGPP             GP GPPGP  PP
Sbjct: 1165 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%)

Query: 122  GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166
            GLPG  GPPGP+G  G + PP             EA +K  +     A ++ ER EP   
Sbjct: 1051 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1110

Query: 167  -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
                   P   GP GP      P     G   + + G        P  PGP+ P
Sbjct: 1111 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 1152



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%)

Query: 36  GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90
           G+  P  A+        P  + PP   G   P     PAG    +    P    A S D 
Sbjct: 751 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 810

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150
           P+    L   + D GV G   ++G+      G+PG PG PG +G  GP  P         
Sbjct: 811 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 859

Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203
              KG    R E+ +P      +P   GP GP      PV   + +D     G VL++  
Sbjct: 860 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 905

Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263
               PGP      A F           +  L   G    P  +G   +G       G   
Sbjct: 906 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 949

Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291
           +P  G  AL      A GEP  RGPP P
Sbjct: 950 SPDGG--ALGPAQKGAKGEPGFRGPPGP 975



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGPPGPPG  G PG
Sbjct: 668 GFPGPPGPPGVPGLPG 683



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122  GLPGPPGPPGPQGPPG 137
            G PGPPGPPGP G  G
Sbjct: 1187 GPPGPPGPPGPPGTMG 1202



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
           G  G PG PG  G PG       P  P +   K      KG     ER  P P   GP G
Sbjct: 582 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 635

Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213
           P   S      T  + +    G  L  L  P   PGP  P
Sbjct: 636 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 675



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143
           L GP G PGP GPPG P +P E
Sbjct: 663 LRGPRGFPGPPGPPGVPGLPGE 684



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%)

Query: 102  SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129
            + KG  G+   RG          K + G PG P                         G 
Sbjct: 959  AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 1018

Query: 130  PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178
            PGP GPPGP  PP   + +  +    A   R      P   GP GP  A
Sbjct: 1019 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 1064


>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
            sapiens]
          Length = 1899

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 23/91 (25%)

Query: 51   PFPRSHPPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
            P P   P  AG   EP    RP   G    Q P  ER                   G+ G
Sbjct: 1780 PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-------------------GLPG 1820

Query: 109  KKRSRGKAKKLKFGLPGPPGPPGPQ--GPPG 137
            +K  RG       GLPGPPGP G    GPPG
Sbjct: 1821 EKGERGTGSSGPRGLPGPPGPQGESRTGPPG 1851



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
            + ++G++G     G    +  G PGP GPPGPQGP G  IP E
Sbjct: 1600 RGERGISGAIGPPGPRGDI--GPPGPQGPPGPQGPNGLSIPGE 1640



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 100  RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            RQ  KG  G+    G+      G PG PGPPGP GPPG
Sbjct: 1643 RQGMKGDAGEPGLPGRT-----GTPGLPGPPGPMGPPG 1675



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
            G  G++  +G A +   GLPG  G PG  GPPGP+ PP
Sbjct: 1639 GEQGRQGMKGDAGEP--GLPGRTGTPGLPGPPGPMGPP 1674



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 125  GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV----RQRERAEPEP-CTCGPAGPVAAS 179
            GPPGPPGP G PG   P        +  + GA+     + +   P P    GP GP   S
Sbjct: 1583 GPPGPPGPAGGPGAKGP------RGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 1636

Query: 180  LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            +       G   D     +      P  PGP  P
Sbjct: 1637 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 1670



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 103  DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            D+G  GK  + G       G PGPPG PG  G  GP
Sbjct: 1676 DRGFTGKDGAMGPR-----GPPGPPGSPGSPGVTGP 1706



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)

Query: 124  PGPPGPPGPQGPPG 137
            PGPPGPPGP G  G
Sbjct: 1777 PGPPGPPGPPGSAG 1790



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%)

Query: 122  GLPGPPGPP---GPQGPPGP 138
            G PGPPGPP   G +G PGP
Sbjct: 1778 GPPGPPGPPGSAGARGEPGP 1797


>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
            sapiens]
          Length = 3063

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 23/91 (25%)

Query: 51   PFPRSHPPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
            P P   P  AG   EP    RP   G    Q P  ER                   G+ G
Sbjct: 2944 PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-------------------GLPG 2984

Query: 109  KKRSRGKAKKLKFGLPGPPGPPGPQ--GPPG 137
            +K  RG       GLPGPPGP G    GPPG
Sbjct: 2985 EKGERGTGSSGPRGLPGPPGPQGESRTGPPG 3015



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPE 143
            + ++G++G     G    +  G PGP GPPGPQGP G  IP E
Sbjct: 2764 RGERGISGAIGPPGPRGDI--GPPGPQGPPGPQGPNGLSIPGE 2804



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 100  RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            RQ  KG  G+    G+      G PG PGPPGP GPPG
Sbjct: 2807 RQGMKGDAGEPGLPGRT-----GTPGLPGPPGPMGPPG 2839



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
            G  G++  +G A +   GLPG  G PG  GPPGP+ PP
Sbjct: 2803 GEQGRQGMKGDAGEP--GLPGRTGTPGLPGPPGPMGPP 2838



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 125  GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV----RQRERAEPEP-CTCGPAGPVAAS 179
            GPPGPPGP G PG   P        +  + GA+     + +   P P    GP GP   S
Sbjct: 2747 GPPGPPGPAGGPGAKGP------RGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 2800

Query: 180  LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            +       G   D     +      P  PGP  P
Sbjct: 2801 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 103  DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            D+G  GK  + G       G PGPPG PG  G  GP
Sbjct: 2840 DRGFTGKDGAMGPR-----GPPGPPGSPGSPGVTGP 2870



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)

Query: 124  PGPPGPPGPQGPPG 137
            PGPPGPPGP G  G
Sbjct: 2941 PGPPGPPGPPGSAG 2954



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%)

Query: 122  GLPGPPGPP---GPQGPPGP 138
            G PGPPGPP   G +G PGP
Sbjct: 2942 GPPGPPGPPGSAGARGEPGP 2961


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 38/122 (31%), Positives = 45/122 (36%), Gaps = 31/122 (25%)

Query: 34  HLGSASPMSAKSRPRC-GPF-PRSHPPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSV 89
           H G A P  A   P   GP  P   P   G + +P     P  AG+A             
Sbjct: 435 HNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIAT------------ 482

Query: 90  DPRDAWMLFVRQSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKE 148
                         KG+NG     G    +   G PG PGPPGP GPPG  + PE  +K 
Sbjct: 483 --------------KGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKA 528

Query: 149 FQ 150
            Q
Sbjct: 529 GQ 530



 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 11/103 (10%)

Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTC 170
           +S+G A + + G PGPPGP GP+G PGP  PP                     + EP   
Sbjct: 49  KSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGK-----------PGYGSPGLQGEPGLP 97

Query: 171 GPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
           GP GP A     V    G+  +         +     PGPR P
Sbjct: 98  GPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGP 140



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 47  PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106
           PR  P P S PP   G   P     P GL     P+A     V          +  ++G 
Sbjct: 70  PRGHPGP-SGPPGKPGYGSPGLQGEP-GLPGPPGPSAVGKPGVPGLPG-----KPGERGP 122

Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            G K   G A     GLPGP GPPGP G PGP
Sbjct: 123 YGPKGDVGPA-----GLPGPRGPPGPPGIPGP 149



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 58  PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD-PRDAWMLFVRQSDKGVNGKKRSRGKA 116
           P   G   P     PAG++V  +P  +       PR          +KG  G     G+ 
Sbjct: 135 PGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGF------PGEKGAPGVPGMNGQK 188

Query: 117 KKLKFGLPGPPGP---PGPQGPPGPIIPP 142
            ++ +G PG PG    PGPQGP GP  PP
Sbjct: 189 GEMGYGAPGRPGERGLPGPQGPTGPSGPP 217



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 105 GVNGKKRSRG---KAKKLKFGLPGPPGPPGPQGPPG 137
           G+NG+K   G     +  + GLPGP GP GP GPPG
Sbjct: 183 GMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPG 218



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 42/138 (30%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 50  GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
           GP      P + G   P     PAG A +     ER                   G +GK
Sbjct: 344 GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERG----------------SPGSDGK 387

Query: 110 KRSRGK----AKKLKFGLPGPPGPP---GPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
               GK      K   GLPGP G P   GP G PGP+ P  A         KG       
Sbjct: 388 PGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGA---------KGMPGHNGE 438

Query: 163 AEPE-----PCTCGPAGP 175
           A P      P T GP GP
Sbjct: 439 AGPRGAPGIPGTRGPIGP 456



 Score = 34.7 bits (78), Expect = 0.14
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%)

Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPG---PPGPPGPQGPPG 137
           ++ + GV G+   +G       G PG   P GPPGPQGPPG
Sbjct: 221 KRGENGVPGQPGIKGDR-----GFPGEMGPIGPPGPQGPPG 256



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
           Q + G+ G        K    GLPG PG  GP GP G + P
Sbjct: 91  QGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGP 131



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           G+ G K  RG A     GLPG PG  G QGP G
Sbjct: 302 GLPGLKGERGPA-----GLPGGPGAKGEQGPAG 329



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           G  G     G   K  +G PG  G PG  GPPGP
Sbjct: 69  GPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGP 102



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           GLPG PG  GP GPPG
Sbjct: 282 GLPGAPGIAGPPGPPG 297



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/18 (72%), Positives = 13/18 (72%)

Query: 120 KFGLPGPPGPPGPQGPPG 137
           K GL GPPG  GPQGP G
Sbjct: 333 KPGLTGPPGNMGPQGPKG 350



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 8/37 (21%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPG---PPGPQGPPGP 138
           G  G K  +G A     GLPG PG   PPG  GP GP
Sbjct: 317 GGPGAKGEQGPA-----GLPGKPGLTGPPGNMGPQGP 348



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           +G  G++   G  K    G PG PG PG +G PG
Sbjct: 252 QGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPG 285


>gi|118498339 EMI domain containing 2 [Homo sapiens]
          Length = 439

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 51  PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
           P PR  P   G    P     P G A    P+        P+ A       +DK     +
Sbjct: 238 PGPRGLPGEMGRPGPPG----PPGPAGNPGPSPN-----SPQGALYSLQPPTDKDNGDSR 288

Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
            +      +  G+PGP GPPGP GPPGP  PP
Sbjct: 289 LASAIVDTVLAGVPGPRGPPGPPGPPGPRGPP 320



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 14/82 (17%)

Query: 57  PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116
           PP   G   PS  N P G     +P  ++ +  D R A  + V     GV G +      
Sbjct: 255 PPGPAGNPGPSP-NSPQGALYSLQPPTDKDNG-DSRLASAI-VDTVLAGVPGPR------ 305

Query: 117 KKLKFGLPGPPGPPGPQGPPGP 138
                G PGPPGPPGP+GPPGP
Sbjct: 306 -----GPPGPPGPPGPRGPPGP 322



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
           G  G K  RG+      G  GP GPPG  GPPGP   P  + +       G         
Sbjct: 212 GPPGSKGDRGQT-----GEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPPGPA-----GN 261

Query: 165 PEPCTCGPAGPVAASLAPVSATAGEDD------DDVVGDVLALLAAPLAPGPRAPR 214
           P P    P G + +   P     G+        D V+  V      P  PGP  PR
Sbjct: 262 PGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPGPR 317



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175
           GP GPPG  GPPGP  PP +         +G   ++  A P P   GP GP
Sbjct: 197 GPAGPPGQTGPPGPAGPPGSKGD------RGQTGEKGPAGP-PGLLGPPGP 240



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G  GPPG  GP GP GP
Sbjct: 197 GPAGPPGQTGPPGPAGP 213


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 27/144 (18%)

Query: 101  QSDKGVNGKKRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP--- 141
            + DKG +G +  RG+     F    GLPGPPGP G            P+GPPGP+ P   
Sbjct: 1127 RGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGK 1186

Query: 142  ---PEALLKEFQLLLKGAVRQRERAEP--EPCTCGPAGP---VAASLAPVSATAGEDDDD 193
               P  L       ++G+V +     P  EP   GP GP   + A+L  +     E   D
Sbjct: 1187 EGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPD 1246

Query: 194  VVGDVLALLAAPLAPGPRAPRVEA 217
             + +     AAP       P V A
Sbjct: 1247 PLPEFTEDQAAPDDKNKTDPGVHA 1270



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 72/248 (29%), Positives = 86/248 (34%), Gaps = 48/248 (19%)

Query: 51   PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
            P     P  AG    P  A  P       EP  E    +           + D G +G+ 
Sbjct: 905  PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGL-----------RGDPGSHGRV 953

Query: 111  RSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEP 165
              RG A         G PG  G PGP GPPGP           Q  + G   QR ER  P
Sbjct: 954  GDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG------QRGIVGMPGQRGERGMP 1007

Query: 166  EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAPRVEAAFLCRLR 224
                 GPAG     + P  AT  +     VG   +    P+  PGP  P          R
Sbjct: 1008 G--LPGPAG-TPGKVGPTGATGDKGPPGPVGPPGS--NGPVGEPGPEGPAGNDG--TPGR 1060

Query: 225  RDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAGFYALAATLHVALGEP 283
              A+ ER    + G   LP ++GA    PG   T G   AP  AG            G+P
Sbjct: 1061 DGAVGERGDRGDPGPAGLPGSQGA----PG---TPGPVGAPGDAG----------QRGDP 1103

Query: 284  PRRGPPRP 291
              RGP  P
Sbjct: 1104 GSRGPIGP 1111



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G   PM     P    FP +  P   GEA P+ A  P G      P  +R  +  P    
Sbjct: 363 GKPGPMGPLGIPGSSGFPGN--PGMKGEAGPTGARGPEG------PQGQRGETGPPGPVG 414

Query: 96  M-----LFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
                         G  G   S G +     G  GPPG PGPQG  GP
Sbjct: 415 SPGLPGAIGTDGTPGAKGPTGSPGTSGPP--GSAGPPGSPGPQGSTGP 460



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 101 QSDKGVNGKKRSRGKA-KKLKFGLPGPPGPPGPQGPPG 137
           + D+G  G+K + G A      GLPGP GPPGP GP G
Sbjct: 776 KGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG 813



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
           G+ G++  +G      F GLPGPPGPPG  G PG
Sbjct: 660 GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPG 693



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%)

Query: 122 GLPGPPGPPGPQGPPGPIIP--------PEALLKEFQLLLKGAVRQRERAEPEPCTCGPA 173
           G PGP GPPG QGP G   P        P+ +  E        V  +  A   P      
Sbjct: 129 GRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGE------PGVPGQPGAPGPPGHPSHP 182

Query: 174 GPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPR 214
           GP   S    +  AG D+   +G  + L+   + P GPR P+
Sbjct: 183 GPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQ 224



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
           G  GP G PGP G  GPI PP                 +     +P T GP GPV    A
Sbjct: 477 GEAGPKGEPGPHGIQGPIGPP-------------GEEGKRGPRGDPGTVGPPGPVGERGA 523

Query: 182 P 182
           P
Sbjct: 524 P 524



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 51  PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110
           P P       G    P E  +P    V  +P A     + PR        + + G+ G  
Sbjct: 671 PGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGA--VGPLGPRGERGNPGERGEPGITGLP 728

Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
             +G A     G  GP G PGP G PG   PP
Sbjct: 729 GEKGMAGG--HGPDGPKGSPGPSGTPGDTGPP 758



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 35/165 (21%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVF---QEPTAERAHSVDPR 92
           G A P   K  P  GP     PP + G       N P G   F   Q P  +     +P 
Sbjct: 807 GPAGPTGEKGEP--GPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG 864

Query: 93  DAWMLFVRQSDKGVNGKKRSRGK----------AKKLKFGLPGPP------------GPP 130
           +      ++ D G  G +   G             K   G  GPP            GPP
Sbjct: 865 EPG----QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPP 920

Query: 131 GPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175
           GP G PGP  P     KE    L+G      R        GPAGP
Sbjct: 921 GPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDR----GPAGP 961



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 44/156 (28%), Positives = 55/156 (35%), Gaps = 30/156 (19%)

Query: 36  GSASPMSAKSRPR----CGPF----PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAH 87
           G A P      P      GP     P   P + G + EP     P  +     P A R  
Sbjct: 231 GGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGA-RGF 289

Query: 88  SVDPRDAWMLFVRQSDKGVNGKKRSRG----KAKKLKFGLPGPP---GPPGPQGPPGPII 140
              P             G+ G K  RG    +  K + G PG     GP GP G  GP+ 
Sbjct: 290 PGAP-------------GLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLG 336

Query: 141 PPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176
           P     +  +L  +GA  QR  A   P   GP GP+
Sbjct: 337 PRGMPGERGRLGPQGAPGQR-GAHGMPGKPGPMGPL 371



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175
           G  GPPGP G QG PGP  PP           +G     +    +P   GP GP
Sbjct: 666 GEQGPPGPTGFQGLPGPPGPPG----------EGGKPGDQGVPGDPGAVGPLGP 709



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 37/120 (30%), Positives = 43/120 (35%), Gaps = 34/120 (28%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---PPGPIIPPEALLKEFQLLLKGAVRQR 160
           KG +G     G+A     G+PG  G PG  G   P GP+ PP             A  + 
Sbjct: 620 KGSSGDPGKPGEAGNA--GVPGQRGAPGKDGEVGPSGPVGPPGL-----------AGERG 666

Query: 161 ERAEPEPC----TCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216
           E+  P P       GP GP      P        D  V GD       P A GP  PR E
Sbjct: 667 EQGPPGPTGFQGLPGPPGPPGEGGKP-------GDQGVPGD-------PGAVGPLGPRGE 712



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           +G  G   +RG    L  G PGP GP G +G PGP
Sbjct: 788 EGTAGNDGARGLPGPL--GPPGPAGPTGEKGEPGP 820



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
           +G  G +  +G A     G  GPPG PG  GP GPI
Sbjct: 221 RGPQGLQGQQGGA-----GPTGPPGEPGDPGPMGPI 251



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181
           G+PG PGP GP G PG    P     + +    GA R  E  + +    GP GPV +   
Sbjct: 360 GMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGA-RGPEGPQGQRGETGPPGPVGSPGL 418

Query: 182 P 182
           P
Sbjct: 419 P 419



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
           +G+ G++   G       G PG PG PGP GP    GP  PP
Sbjct: 224 QGLQGQQGGAGPT-----GPPGEPGDPGPMGPIGSRGPEGPP 260



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 57   PPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114
            P R G   E  +   P  AGL   Q           P DA     ++ D G  G     G
Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAG----QRGDPGSRGPIGPPG 1113

Query: 115  KAKKLKFGLPGPPGPPGPQGPPG 137
            +A K   GLPGP GP G +G  G
Sbjct: 1114 RAGKR--GLPGPQGPRGDKGDHG 1134



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           G  GK+  RG       G  GPPGP G +G PG
Sbjct: 498 GEEGKRGPRGDP-----GTVGPPGPVGERGAPG 525


>gi|5729785 complement component 1, q subcomponent-like 1 [Homo
           sapiens]
          Length = 258

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           + K  + G PGPPGPPG  GPPGP+ PP
Sbjct: 69  QGKPGRTGKPGPPGPPGDPGPPGPVGPP 96



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 31/101 (30%)

Query: 41  MSAKSRPRCGPFPRSHPPRA----GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWM 96
           M    R  C P+P   P       GG+A   ++  P    + Q P               
Sbjct: 24  MLGTCRMVCDPYPARGPGAGARTDGGDALSEQSGAPPPSTLVQGP--------------- 68

Query: 97  LFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
               Q   G  GK    G         PG PGPPGP GPPG
Sbjct: 69  ----QGKPGRTGKPGPPGP--------PGDPGPPGPVGPPG 97


>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
          Length = 1604

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
           KGV G+    G+  +   G PG PG PG QG PGP  PP                  + A
Sbjct: 776 KGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPP-------------GPTGEKGA 822

Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216
           +  P   G  GPV    A VS   G D          L   P   GPR  + E
Sbjct: 823 QGSPGVKGATGPVGPPGASVSGPPGRDGQQ---GQTGLRGTPGEKGPRGEKGE 872



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 100  RQSDKGVNGKKRSRGKAKKLKFGLPGP---PGPPGPQGPPG 137
            RQ   GV G   ++G+   +  G+ G    PGPPGPQGPPG
Sbjct: 1504 RQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPG 1544



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 29/103 (28%)

Query: 36   GSASPMSAKSRPRC-GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
            GS     A+  P   GP  R  PP   G   P     PAG++                  
Sbjct: 1267 GSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVG--------------- 1311

Query: 95   WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
                  + D+G  G+   RG A     GLPG PGPPG  GPPG
Sbjct: 1312 -----LKGDRGATGE---RGLA-----GLPGQPGPPGHPGPPG 1341



 Score = 36.2 bits (82), Expect = 0.048
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            Q++KG  G +   G       G PGPPGPPG QGP G
Sbjct: 1182 QAEKGSEGIRGPSGLP-----GSPGPPGPPGIQGPAG 1213



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 45/154 (29%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 58   PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117
            P + G   P     PAGL        +     DP  A          G+ G    +GK  
Sbjct: 1197 PGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPA-------GPPGLMGPPGFKGKT- 1248

Query: 118  KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVA 177
                G PG PGP G  G PG   PP +  +       GA+  + R  P P   GP GP  
Sbjct: 1249 ----GHPGLPGPKGDCGKPG---PPGSTGRPGAEGEPGAMGPQGRPGP-PGHVGPPGPPG 1300

Query: 178  -ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210
                A +SA   + D    G+   L   P  PGP
Sbjct: 1301 QPGPAGISAVGLKGDRGATGE-RGLAGLPGQPGP 1333



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 122  GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPE-----PCTCGPAG-P 175
            G PGPPGP GP G PG +  P     + +  L G    +    P      P   GP G P
Sbjct: 1042 GSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLP 1101

Query: 176  VAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216
                    + +AGE  +        L   P  PGP  PR E
Sbjct: 1102 GIKGERGYTGSAGEKGEPGPPGSEGL---PGPPGPAGPRGE 1139



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 101  QSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
            + ++G  G    +G+       GLPGPPGP GP+G  GP
Sbjct: 1104 KGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGP 1142



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 12/33 (36%)

Query: 122  GLPGPPGPPGPQG------------PPGPIIPP 142
            GLPGPPG PG +G            PPGPI PP
Sbjct: 1021 GLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPP 1053



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 11/44 (25%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPP------GPQGPPGP 138
            Q + G  G +  +G+      G PGPPGPP      G  GPPGP
Sbjct: 1143 QGNSGEKGDQGFQGQP-----GFPGPPGPPGFPGKVGSPGPPGP 1181



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 122  GLPGPPGPPGPQGPPG 137
            G+PG PGPPGP G PG
Sbjct: 1558 GIPGIPGPPGPMGQPG 1573



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 115 KAKKLKFGLPGPPGPPGPQGPPGP 138
           K +K  FG  GP G PGP GP GP
Sbjct: 598 KGEKGNFGEAGPAGSPGPPGPVGP 621



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 20/78 (25%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164
           G  G K  +G     + G PG PG PG QGPPG               LKG      + E
Sbjct: 742 GQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPG---------------LKGV-----QGE 781

Query: 165 PEPCTCGPAGPVAASLAP 182
           P P   G  GP     AP
Sbjct: 782 PGPPGRGVQGPQGEPGAP 799



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVR------ 158
           G+ G+K + G+A     G PGPPGP GP G  G    P         L  G VR      
Sbjct: 596 GLKGEKGNFGEAGPA--GSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPG 653

Query: 159 -QRERAEPEPCTCGPAG 174
              E+ EP P   G  G
Sbjct: 654 PSGEKGEPGPPGFGLPG 670



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 12/15 (80%), Positives = 12/15 (80%)

Query: 124 PGPPGPPGPQGPPGP 138
           PGP GPPG  GPPGP
Sbjct: 903 PGPQGPPGIPGPPGP 917



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 122  GLPGPPGPPGPQGPPG 137
            G+ G PGPPGP GPPG
Sbjct: 1039 GMRGSPGPPGPIGPPG 1054



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 104  KGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPP 142
            +G  G + + G+     F G PG PGPPGP G PG +  P
Sbjct: 1137 RGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSP 1176



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 101  QSDKGVNGKKRSRGKAKKLKFGLPGPPGPP---GPQGPPGP 138
            + D G  G+K   G+  K + G+PG PG     GP GPPGP
Sbjct: 1367 KGDPGAAGQKGQAGE--KGRAGMPGGPGKSGSMGPVGPPGP 1405



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 31/108 (28%)

Query: 105 GVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
           G  GK   RG K +K   G PG PG PG  G PG               L G        
Sbjct: 670 GKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPG---------------LSG-------- 706

Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPR 211
             EP   GPAGP        +A        + G V  +   P  PGP+
Sbjct: 707 --EPGVQGPAGPKGEKGDGCTAC-----PSLQGTVTDMAGRPGQPGPK 747



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 20/58 (34%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPGPQ--------------------GPPGPIIPP 142
            G  G+K   G     + GLPGPPGP GP                     GPPGP+  P
Sbjct: 1515 GTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQP 1572



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 13/20 (65%), Positives = 14/20 (70%)

Query: 122 GLPGPPGPPGPQGPPGPIIP 141
           GL G PGPPG  GPPG  +P
Sbjct: 444 GLAGEPGPPGLPGPPGIGLP 463



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 51   PFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108
            P P  HP   G       A +  P G   F  P   +    DP  A     +  +KG  G
Sbjct: 1331 PGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKG---DPGAAGQKG-QAGEKGRAG 1386

Query: 109  KKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
                 GK+  +  G  GPPGP G +G PG
Sbjct: 1387 MPGGPGKSGSM--GPVGPPGPAGERGHPG 1413



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPG PGP GPPG
Sbjct: 904 GPQGPPGIPGPPGPPG 919



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           +G+ G+    G       GLPG PG PG  GPPGP
Sbjct: 443 EGLAGEPGPPGLPGPPGIGLPGTPGDPG--GPPGP 475



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PG PGPPGP G PG
Sbjct: 907 GPPGIPGPPGPPGVPG 922



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 3/19 (15%)

Query: 122 GLPGPPGPPGP---QGPPG 137
           G+PGPPGPPG    QG PG
Sbjct: 910 GIPGPPGPPGVPGLQGVPG 928



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 122  GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174
            G+PGPPGP G  G  G   P +           GA+   ++  P     GP G
Sbjct: 1561 GIPGPPGPMGQPGKAGHCNPSDCF---------GAMPMEQQYPPMKTMKGPFG 1604



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 15/34 (44%)

Query: 120  KFGLPGPPGP---------------PGPQGPPGP 138
            K G PGPPGP               PG  GPPGP
Sbjct: 1172 KVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGP 1205



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPG----------PPGPQGPPGPIIPP 142
           + +KG  G+     +   +  G+PG PG          P GP G PGP  PP
Sbjct: 867 RGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPP 918



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 39/86 (45%)

Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPP------------------GPPGPQGPPGPIIPPE 143
           S  G +G   S G      FGLPG P                  GP G  GPPGP+ P  
Sbjct: 570 SSTGASGDVGSPG------FGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAG 623

Query: 144 ALLKEFQLLLKGAVRQRERAEP-EPC 168
                    +KGA     + EP EPC
Sbjct: 624 ---------IKGA-----KGEPCEPC 635


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 101 QSDKGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQ 159
           +  KG  G +  RG A    + G+PG PG PGP GPPGP  PP         L  G   +
Sbjct: 111 EGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEK 170

Query: 160 RERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
                  P   GP+GP      P  A   +      G+       P A GP  PR
Sbjct: 171 STGGISVPGPMGPSGPRGLP-GPPGAPGPQGFQGPPGEP----GEPGASGPMGPR 220



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 17/89 (19%)

Query: 57   PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK- 115
            PP + GE  PS A+ PAG                PR            G+NG     G  
Sbjct: 1122 PPGSPGEQGPSGASGPAG----------------PRGPPGSAGAPGKDGLNGLPGPIGPP 1165

Query: 116  AKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
              + + G  GP GPPGP GPPGP  PP A
Sbjct: 1166 GPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194



 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 37/111 (33%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 36  GSASPMSAKSRPR-------CGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHS 88
           G A P  A   P         GP     P  A G+   S  + PAG    +    +R   
Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805

Query: 89  VDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
             P  A       +D G  G K   G A     G  GPPGP GP GPPGPI
Sbjct: 806 GPPGPAGFAGPPGAD-GQPGAKGEPGDAGAK--GDAGPPGPAGPAGPPGPI 853



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 17/106 (16%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAG--GEAEPSEANRPAGLAVFQEPTAERAHSVDPRD 93
            G A P  A   P   P P     ++G  GE  P+    P G    + P   +     PR 
Sbjct: 1040 GPAGPPGAPGAPGA-PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG----PR- 1093

Query: 94   AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGP 138
                     DKG  G++  RG K  +   GL GPPGPPG  G  GP
Sbjct: 1094 --------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 50/173 (28%), Positives = 65/173 (37%), Gaps = 21/173 (12%)

Query: 57   PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK- 115
            PP   GE     A+ PAG      P          R    L  ++ ++G  G     G+ 
Sbjct: 927  PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ----RGVVGLPGQRGERGFPGLPGPSGEP 982

Query: 116  AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQ--RERAEPEPCTCGPA 173
             K+   G  G  GPPGP GPPG   PP    +E     +G+  +     A+ +    GPA
Sbjct: 983  GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042

Query: 174  GPVAASLA-----PVSATAGEDDDDVVGDVLALLAAPLAP-------GPRAPR 214
            GP  A  A     PV       D    G   A  A P+ P       GP+ PR
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGP--AGPAGPVGPVGARGPAGPQGPR 1093



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 38/107 (35%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163
           G  G++  +G A    F GLPGP GPPG  G PG    P  L        +G     ER 
Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARG-----ERG 680

Query: 164 EP-EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
            P E    GP GP      P  A     +D   GD      AP APG
Sbjct: 681 FPGERGVQGPPGPA----GPRGANGAPGNDGAKGDA----GAPGAPG 719



 Score = 38.5 bits (88), Expect = 0.010
 Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 29/102 (28%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           GSA P  A   P  G   R  PP   G A P     PAG                     
Sbjct: 866 GSAGPPGATGFP--GAAGRVGPPGPSGNAGPPGPPGPAG--------------------- 902

Query: 96  MLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
               ++  KG  G+    G+  ++  G PGPPGP G +G PG
Sbjct: 903 ----KEGGKGPRGETGPAGRPGEV--GPPGPPGPAGEKGSPG 938



 Score = 37.0 bits (84), Expect = 0.028
 Identities = 33/106 (31%), Positives = 36/106 (33%), Gaps = 31/106 (29%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP--------------EP 167
           G  GPPGP GP GPPG                 GAV  +  A P              EP
Sbjct: 329 GAAGPPGPTGPAGPPG---------------FPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373

Query: 168 CTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
              GPAG  AA  A      G+           +  AP  PG R P
Sbjct: 374 GPPGPAG--AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417



 Score = 37.0 bits (84), Expect = 0.028
 Identities = 33/93 (35%), Positives = 35/93 (37%), Gaps = 32/93 (34%)

Query: 54  RSHPPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
           R  P  AG +  P EA RP  AGL     P A                    KG+ G   
Sbjct: 511 RGSPGPAGPKGSPGEAGRPGEAGL-----PGA--------------------KGLTGSPG 545

Query: 112 SRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144
           S G       G  GPPGP G  G PGP  PP A
Sbjct: 546 SPGPD-----GKTGPPGPAGQDGRPGPPGPPGA 573



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 40/132 (30%), Positives = 47/132 (35%), Gaps = 48/132 (36%)

Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGP---------QGPPGPIIPPEALLKEFQLLLK 154
           G  G K + G+  K  + G+PGPPG  GP         QGPPGP  P             
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP------------- 627

Query: 155 GAVRQRERAEPEPCTC-------GPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA 207
                 ER E  P          GPAGP   +  P        +  V GD+        A
Sbjct: 628 ----AGERGEQGPAGSPGFQGLPGPAGPPGEAGKP-------GEQGVPGDL-------GA 669

Query: 208 PGPRAPRVEAAF 219
           PGP   R E  F
Sbjct: 670 PGPSGARGERGF 681



 Score = 35.8 bits (81), Expect = 0.062
 Identities = 50/184 (27%), Positives = 56/184 (30%), Gaps = 27/184 (14%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G A P  A+  P  G      PP   G A P  A+   G          +  +  P  A 
Sbjct: 788 GPAGPTGARGAP--GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845

Query: 96  ML-----FVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEF 149
                         G  G + S G      F G  G  GPPGP G  GP  PP    KE 
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE- 904

Query: 150 QLLLKGAVRQRERAEP--EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA 207
                G    R    P   P   GP GP      P         D   G       AP  
Sbjct: 905 -----GGKGPRGETGPAGRPGEVGPPGPP----GPAGEKGSPGADGPAG-------APGT 948

Query: 208 PGPR 211
           PGP+
Sbjct: 949 PGPQ 952



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 18/95 (18%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP--VAAS 179
           G+ GP G  GP+GP GP  PP           +  +  +      P   GP GP  +  +
Sbjct: 109 GVEGPKGDTGPRGPRGPAGPPG----------RDGIPGQPGLPGPPGPPGPPGPPGLGGN 158

Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
            AP   + G D+    G     ++ P   GP  PR
Sbjct: 159 FAP-QLSYGYDEKSTGG-----ISVPGPMGPSGPR 187



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 25/108 (23%)

Query: 30  TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
           TGG  +    PM   S PR  P P   P   G +  P E   P        P   R    
Sbjct: 172 TGG--ISVPGPMGP-SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASG----PMGPRGPPG 224

Query: 90  DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
            P             G NG     GK      G PG  GPPGPQG  G
Sbjct: 225 PP-------------GKNGDDGEAGKP-----GRPGERGPPGPQGARG 254



 Score = 33.5 bits (75), Expect = 0.31
 Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 18/111 (16%)

Query: 36  GSASPMSAKSRPRC-GPFPRSHP---PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDP 91
           GS  P   +  P   GP   + P   P A G+     AN   G+A        R  S   
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP- 420

Query: 92  RDAWMLFVRQSDKGVNGKKRSRGK----AKKLKFGLPGPPGPPGPQGPPGP 138
                    Q   G  G K + G+      K   G  G PGP G QGPPGP
Sbjct: 421 ---------QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 43/148 (29%), Positives = 48/148 (32%), Gaps = 23/148 (15%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           GS     AK  P  GP     PP   GE     A    G      P  ER          
Sbjct: 440 GSKGDTGAKGEP--GPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS----- 492

Query: 96  MLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI-IPPEALLKEFQLLLK 154
                +   G +G    +G A     G  G PGP GP+G PG    P EA L       K
Sbjct: 493 -----RGFPGADGVAGPKGPA-----GERGSPGPAGPKGSPGEAGRPGEAGLPG----AK 538

Query: 155 GAVRQRERAEPEPCTCGPAGPVAASLAP 182
           G         P+  T GP GP      P
Sbjct: 539 GLTGSPGSPGPDGKT-GPPGPAGQDGRP 565



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PG  GP GP+GPPGP
Sbjct: 209 GEPGASGPMGPRGPPGP 225



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP-EPCTCGPAGPVAASL 180
           G PG PG PG  GP GP  PP    K             E  +P  P   GP GP  A  
Sbjct: 203 GPPGEPGEPGASGPMGPRGPPGPPGKNGD--------DGEAGKPGRPGERGPPGPQGARG 254

Query: 181 APVSA 185
            P +A
Sbjct: 255 LPGTA 259



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 31/97 (31%), Positives = 34/97 (35%), Gaps = 33/97 (34%)

Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP---------------PGPIIPPEAL 145
           Q   G+ G    RG A     GLPGP G  G  GP                GPI PP   
Sbjct: 721 QGAPGLQGMPGERGAA-----GLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP- 774

Query: 146 LKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAP 182
                    GA   +  + P     GPAGP  A  AP
Sbjct: 775 --------AGAPGDKGESGPS----GPAGPTGARGAP 799



 Score = 31.6 bits (70), Expect = 1.2
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 50  GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVR--QSDKGV 106
           GP  PR  P   G   +  EA +P        P  + A  + P  A +  ++  +   G+
Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGL-PGTAGLPGMKGHRGFSGL 273

Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
           +G K   G A     G  G PG PG  G PG + P
Sbjct: 274 DGAKGDAGPA-----GPKGEPGSPGENGAPGQMGP 303



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
           G PG PG  GP GP GP  PP
Sbjct: 407 GAPGFPGARGPSGPQGPGGPP 427


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161
            GV G K   G       G PGPPGP G   P GPPG   PP A   E +   KGA +   
Sbjct: 1342 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1395

Query: 162  RAEPEPCTCGPAGP 175
             AE  P   GP GP
Sbjct: 1396 GAEGPPGKTGPVGP 1409



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
            G   PM     P  GP     P  A G +  P       G+    EP  E  +   P +A
Sbjct: 1225 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1281

Query: 95   WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154
                      GV G K  RG+  K + G PG  GPPG +GPPG   P             
Sbjct: 1282 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1316

Query: 155  GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
                   +  P P       GP G P  A    V    GED D            P  PG
Sbjct: 1317 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1357

Query: 210  PRAPRVEA 217
            P  P  EA
Sbjct: 1358 PPGPSGEA 1365



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
            G+A P+    RP     P+  P  AG +  P E     PAG    Q P      +     
Sbjct: 1078 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1133

Query: 94   AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
                     DKG  G+   +G       G  G  GPPGP G  GP+  P     + +   
Sbjct: 1134 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1184

Query: 154  KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            +G      +   E     P  P    L  +    GE  ++  GDV   +  P  PGPR P
Sbjct: 1185 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1241

Query: 214  R 214
            +
Sbjct: 1242 Q 1242



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 57   PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
            P + G + +  E N P G    Q P      A       PR    +F ++ D+G  G   
Sbjct: 1146 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1204

Query: 112  SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138
              G             K +    G  GPPGPPGP+GP GP
Sbjct: 1205 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1244



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
            G   P   +  P  GP      P A G+  P     P GL   +     +     P    
Sbjct: 1414 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1471

Query: 96   MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138
            ++     Q +KG  G   ++G    K   G+PGP GP   PGP G PGP
Sbjct: 1472 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1520



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146
            +G  G K S G A +   G  G PGPPG  GPPG +I P  +L
Sbjct: 1521 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1561



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 53   PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
            P   P  AGG+ EP    +  G+   +     R     P    +    Q   G  G+K  
Sbjct: 1169 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1223

Query: 113  RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
             G    +  G PGPPGP GPQGP    GP  PP
Sbjct: 1224 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1254



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
           +G  GK   +G +     G PGPPG  GPQGP GP+
Sbjct: 906 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 939



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%)

Query: 36   GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71
            G+A P  AK  P     +  P P   P   G   EP  A +                   
Sbjct: 1300 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1359

Query: 72   -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120
             P+G A    P  +R     P  A     RQ +KG  G+  + G   K            
Sbjct: 1360 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415

Query: 121  ------FGLPGP------PGPPGPQGPPGPIIPP 142
                   G+PGP      PG  G  GPPGP+ PP
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1449



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%)

Query: 54   RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105
            ++ PP  GG   P       G      P  ER H   P       +         + D G
Sbjct: 971  KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1024

Query: 106  VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155
              G     G A    F    GLPG  G PG      PQGPPGP+  P    +       G
Sbjct: 1025 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1081

Query: 156  AVRQRERAEPEPCTCGPAGPVAASLAP 182
             +    R  P+    GP GP     AP
Sbjct: 1082 PIGLPGRPGPQ----GPPGPAGEKGAP 1104



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           R    G  G   ++G++     G PGP GP G QGPPGP   P
Sbjct: 551 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 588



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PGP G PGPQGP GP
Sbjct: 706 GNPGPQGLPGPQGPIGP 722



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           GV+G    +G       G  G PGPPG QG PGP
Sbjct: 682 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 710



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           D G +G+   +GK      G+PG PG PG QGP G
Sbjct: 836 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 865



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142
           G  G+K  +G+   ++ G+     PGP GP G  GPP   GP  PP
Sbjct: 432 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 477



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           G NG+K +RG A        G PGP G +GP GP
Sbjct: 874 GANGEKGARGVA--------GKPGPRGQRGPTGP 899



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 50  GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
           GP     PP   G   P     P G      P  E+     P  A +        G +G 
Sbjct: 694 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 743

Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
               GK  +  + G  GPPGP GP G PGP
Sbjct: 744 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 773



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G  GP G PGP+GPPGP
Sbjct: 934 GPQGPVGFPGPKGPPGP 950



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142
           P    ML  R    G  G   S  +A+      + +  L GPPGP G  G PGP+  P
Sbjct: 501 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 558



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G   PM    RP  GP        A GE+       P G+     PT +      P    
Sbjct: 541 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 595

Query: 96  MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
                   +G+ G+  ++G +      GLPG  G  G +GP GP  PP
Sbjct: 596 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 639



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
           G  G PGP G  GP GPI PP
Sbjct: 703 GQQGNPGPQGLPGPQGPIGPP 723



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 940 GFPGPKGPPGPPGKDG 955



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G+ GPPG  GP GPPG
Sbjct: 463 GIMGPPGLQGPTGPPG 478



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPG PG +GPPG
Sbjct: 472 GPTGPPGDPGDRGPPG 487



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
           G  G++  +G    + F G  GPPGPPG  G PG
Sbjct: 925 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171
           G PG PG PG  G PGP  P   L+  F+      KG     + A+ +           G
Sbjct: 484 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 541

Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
           P GP+  +    PV            GD          PGP+ PR
Sbjct: 542 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 576



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 31  GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87
           GG     A   S    P+ GP     PP  G   +P +  RP    G  +  EP A+   
Sbjct: 556 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 612

Query: 88  SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
             D            DKG  G++  +G         PGPPG  G +G  G I P
Sbjct: 613 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 653



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PG PG  G  GPPGP
Sbjct: 673 GAPGQPGMAGVDGPPGP 689



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
           KG  G K  RG+  ++   G  GP GP G  GP G   P     ++ +L + G      R
Sbjct: 801 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 860

Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189
             P+  T  P  P A         AG+
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGK 887



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%)

Query: 30  TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
           TG R    A   + K  P+ G      PP   GE  P     P G    + P        
Sbjct: 897 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 955

Query: 90  DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            P             G  G+   +GK         GPPGP G  GP GP
Sbjct: 956 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 986



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)

Query: 105  GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137
            G  G++ S G A  +  GLPG      PPGP G +G PG
Sbjct: 1069 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1105



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 122  GLPGPPGPPGPQGPPGP 138
            GLPGP GP G +G  GP
Sbjct: 1516 GLPGPQGPKGNKGSTGP 1532


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161
            GV G K   G       G PGPPGP G   P GPPG   PP A   E +   KGA +   
Sbjct: 1291 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1344

Query: 162  RAEPEPCTCGPAGP 175
             AE  P   GP GP
Sbjct: 1345 GAEGPPGKTGPVGP 1358



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
            G   PM     P  GP     P  A G +  P       G+    EP  E  +   P +A
Sbjct: 1174 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1230

Query: 95   WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154
                      GV G K  RG+  K + G PG  GPPG +GPPG   P             
Sbjct: 1231 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1265

Query: 155  GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
                   +  P P       GP G P  A    V    GED D            P  PG
Sbjct: 1266 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1306

Query: 210  PRAPRVEA 217
            P  P  EA
Sbjct: 1307 PPGPSGEA 1314



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
            G+A P+    RP     P+  P  AG +  P E     PAG    Q P      +     
Sbjct: 1027 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1082

Query: 94   AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
                     DKG  G+   +G       G  G  GPPGP G  GP+  P     + +   
Sbjct: 1083 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1133

Query: 154  KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            +G      +   E     P  P    L  +    GE  ++  GDV   +  P  PGPR P
Sbjct: 1134 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1190

Query: 214  R 214
            +
Sbjct: 1191 Q 1191



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 57   PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
            P + G + +  E N P G    Q P      A       PR    +F ++ D+G  G   
Sbjct: 1095 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1153

Query: 112  SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138
              G             K +    G  GPPGPPGP+GP GP
Sbjct: 1154 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1193



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
            G   P   +  P  GP      P A G+  P     P GL   +     +     P    
Sbjct: 1363 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1420

Query: 96   MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138
            ++     Q +KG  G   ++G    K   G+PGP GP   PGP G PGP
Sbjct: 1421 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1469



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146
            +G  G K S G A +   G  G PGPPG  GPPG +I P  +L
Sbjct: 1470 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1510



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 53   PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
            P   P  AGG+ EP    +  G+   +     R     P    +    Q   G  G+K  
Sbjct: 1118 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1172

Query: 113  RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
             G    +  G PGPPGP GPQGP    GP  PP
Sbjct: 1173 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1203



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
           +G  GK   +G +     G PGPPG  GPQGP GP+
Sbjct: 855 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 888



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%)

Query: 36   GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71
            G+A P  AK  P     +  P P   P   G   EP  A +                   
Sbjct: 1249 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1308

Query: 72   -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120
             P+G A    P  +R     P  A     RQ +KG  G+  + G   K            
Sbjct: 1309 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364

Query: 121  ------FGLPGP------PGPPGPQGPPGPIIPP 142
                   G+PGP      PG  G  GPPGP+ PP
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1398



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%)

Query: 54   RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105
            ++ PP  GG   P       G      P  ER H   P       +         + D G
Sbjct: 920  KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 973

Query: 106  VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155
              G     G A    F    GLPG  G PG      PQGPPGP+  P    +       G
Sbjct: 974  PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1030

Query: 156  AVRQRERAEPEPCTCGPAGPVAASLAP 182
             +    R  P+    GP GP     AP
Sbjct: 1031 PIGLPGRPGPQ----GPPGPAGEKGAP 1053



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           R    G  G   ++G++     G PGP GP G QGPPGP   P
Sbjct: 500 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 537



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PGP G PGPQGP GP
Sbjct: 655 GNPGPQGLPGPQGPIGP 671



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           GV+G    +G       G  G PGPPG QG PGP
Sbjct: 631 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 659



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           D G +G+   +GK      G+PG PG PG QGP G
Sbjct: 785 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 814



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142
           G  G+K  +G+   ++ G+     PGP GP G  GPP   GP  PP
Sbjct: 381 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 426



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           G NG+K +RG A        G PGP G +GP GP
Sbjct: 823 GANGEKGARGVA--------GKPGPRGQRGPTGP 848



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 50  GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
           GP     PP   G   P     P G      P  E+     P  A +        G +G 
Sbjct: 643 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 692

Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
               GK  +  + G  GPPGP GP G PGP
Sbjct: 693 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 722



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G  GP G PGP+GPPGP
Sbjct: 883 GPQGPVGFPGPKGPPGP 899



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142
           P    ML  R    G  G   S  +A+      + +  L GPPGP G  G PGP+  P
Sbjct: 450 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 507



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G   PM    RP  GP        A GE+       P G+     PT +      P    
Sbjct: 490 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 544

Query: 96  MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
                   +G+ G+  ++G +      GLPG  G  G +GP GP  PP
Sbjct: 545 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 588



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
           G  G PGP G  GP GPI PP
Sbjct: 652 GQQGNPGPQGLPGPQGPIGPP 672



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 889 GFPGPKGPPGPPGKDG 904



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G+ GPPG  GP GPPG
Sbjct: 412 GIMGPPGLQGPTGPPG 427



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPG PG +GPPG
Sbjct: 421 GPTGPPGDPGDRGPPG 436



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
           G  G++  +G    + F G  GPPGPPG  G PG
Sbjct: 874 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171
           G PG PG PG  G PGP  P   L+  F+      KG     + A+ +           G
Sbjct: 433 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 490

Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
           P GP+  +    PV            GD          PGP+ PR
Sbjct: 491 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 525



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 31  GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87
           GG     A   S    P+ GP     PP  G   +P +  RP    G  +  EP A+   
Sbjct: 505 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 561

Query: 88  SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
             D            DKG  G++  +G         PGPPG  G +G  G I P
Sbjct: 562 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 602



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PG PG  G  GPPGP
Sbjct: 622 GAPGQPGMAGVDGPPGP 638



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
           KG  G K  RG+  ++   G  GP GP G  GP G   P     ++ +L + G      R
Sbjct: 750 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 809

Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189
             P+  T  P  P A         AG+
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGK 836



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%)

Query: 30  TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
           TG R    A   + K  P+ G      PP   GE  P     P G    + P        
Sbjct: 846 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 904

Query: 90  DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            P             G  G+   +GK         GPPGP G  GP GP
Sbjct: 905 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 935



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)

Query: 105  GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137
            G  G++ S G A  +  GLPG      PPGP G +G PG
Sbjct: 1018 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1054



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 122  GLPGPPGPPGPQGPPGP 138
            GLPGP GP G +G  GP
Sbjct: 1465 GLPGPQGPKGNKGSTGP 1481


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 105  GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161
            GV G K   G       G PGPPGP G   P GPPG   PP A   E +   KGA +   
Sbjct: 1330 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1383

Query: 162  RAEPEPCTCGPAGP 175
             AE  P   GP GP
Sbjct: 1384 GAEGPPGKTGPVGP 1397



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94
            G   PM     P  GP     P  A G +  P       G+    EP  E  +   P +A
Sbjct: 1213 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1269

Query: 95   WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154
                      GV G K  RG+  K + G PG  GPPG +GPPG   P             
Sbjct: 1270 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1304

Query: 155  GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209
                   +  P P       GP G P  A    V    GED D            P  PG
Sbjct: 1305 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1345

Query: 210  PRAPRVEA 217
            P  P  EA
Sbjct: 1346 PPGPSGEA 1353



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93
            G+A P+    RP     P+  P  AG +  P E     PAG    Q P      +     
Sbjct: 1066 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1121

Query: 94   AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153
                     DKG  G+   +G       G  G  GPPGP G  GP+  P     + +   
Sbjct: 1122 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1172

Query: 154  KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            +G      +   E     P  P    L  +    GE  ++  GDV   +  P  PGPR P
Sbjct: 1173 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1229

Query: 214  R 214
            +
Sbjct: 1230 Q 1230



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%)

Query: 57   PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111
            P + G + +  E N P G    Q P      A       PR    +F ++ D+G  G   
Sbjct: 1134 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1192

Query: 112  SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138
              G             K +    G  GPPGPPGP+GP GP
Sbjct: 1193 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1232



 Score = 37.7 bits (86), Expect = 0.016
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 36   GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
            G   P   +  P  GP      P A G+  P     P GL   +     +     P    
Sbjct: 1402 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1459

Query: 96   MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138
            ++     Q +KG  G   ++G    K   G+PGP GP   PGP G PGP
Sbjct: 1460 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1508



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 104  KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146
            +G  G K S G A +   G  G PGPPG  GPPG +I P  +L
Sbjct: 1509 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1549



 Score = 36.6 bits (83), Expect = 0.037
 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 53   PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112
            P   P  AGG+ EP    +  G+   +     R     P    +    Q   G  G+K  
Sbjct: 1157 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1211

Query: 113  RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142
             G    +  G PGPPGP GPQGP    GP  PP
Sbjct: 1212 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1242



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139
           +G  GK   +G +     G PGPPG  GPQGP GP+
Sbjct: 894 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 927



 Score = 35.4 bits (80), Expect = 0.082
 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%)

Query: 36   GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71
            G+A P  AK  P     +  P P   P   G   EP  A +                   
Sbjct: 1288 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1347

Query: 72   -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120
             P+G A    P  +R     P  A     RQ +KG  G+  + G   K            
Sbjct: 1348 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403

Query: 121  ------FGLPGP------PGPPGPQGPPGPIIPP 142
                   G+PGP      PG  G  GPPGP+ PP
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1437



 Score = 35.0 bits (79), Expect = 0.11
 Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%)

Query: 54   RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105
            ++ PP  GG   P       G      P  ER H   P       +         + D G
Sbjct: 959  KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1012

Query: 106  VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155
              G     G A    F    GLPG  G PG      PQGPPGP+  P    +       G
Sbjct: 1013 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1069

Query: 156  AVRQRERAEPEPCTCGPAGPVAASLAP 182
             +    R  P+    GP GP     AP
Sbjct: 1070 PIGLPGRPGPQ----GPPGPAGEKGAP 1092



 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           R    G  G   ++G++     G PGP GP G QGPPGP   P
Sbjct: 539 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 576



 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PGP G PGPQGP GP
Sbjct: 694 GNPGPQGLPGPQGPIGP 710



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           GV+G    +G       G  G PGPPG QG PGP
Sbjct: 670 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 698



 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           D G +G+   +GK      G+PG PG PG QGP G
Sbjct: 824 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 853



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142
           G  G+K  +G+   ++ G+     PGP GP G  GPP   GP  PP
Sbjct: 420 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 465



 Score = 32.0 bits (71), Expect = 0.90
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
           G NG+K +RG A        G PGP G +GP GP
Sbjct: 862 GANGEKGARGVA--------GKPGPRGQRGPTGP 887



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 50  GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109
           GP     PP   G   P     P G      P  E+     P  A +        G +G 
Sbjct: 682 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 731

Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138
               GK  +  + G  GPPGP GP G PGP
Sbjct: 732 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 761



 Score = 31.2 bits (69), Expect = 1.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G  GP G PGP+GPPGP
Sbjct: 922 GPQGPVGFPGPKGPPGP 938



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 91  PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142
           P    ML  R    G  G   S  +A+      + +  L GPPGP G  G PGP+  P
Sbjct: 489 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 546



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 36  GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
           G   PM    RP  GP        A GE+       P G+     PT +      P    
Sbjct: 529 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 583

Query: 96  MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
                   +G+ G+  ++G +      GLPG  G  G +GP GP  PP
Sbjct: 584 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 627



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/21 (61%), Positives = 13/21 (61%)

Query: 122 GLPGPPGPPGPQGPPGPIIPP 142
           G  G PGP G  GP GPI PP
Sbjct: 691 GQQGNPGPQGLPGPQGPIGPP 711



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G PGP GPPGP G  G
Sbjct: 928 GFPGPKGPPGPPGKDG 943



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G+ GPPG  GP GPPG
Sbjct: 451 GIMGPPGLQGPTGPPG 466



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 122 GLPGPPGPPGPQGPPG 137
           G  GPPG PG +GPPG
Sbjct: 460 GPTGPPGDPGDRGPPG 475



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137
           G  G++  +G    + F G  GPPGPPG  G PG
Sbjct: 913 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171
           G PG PG PG  G PGP  P   L+  F+      KG     + A+ +           G
Sbjct: 472 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 529

Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214
           P GP+  +    PV            GD          PGP+ PR
Sbjct: 530 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 564



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%)

Query: 31  GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87
           GG     A   S    P+ GP     PP  G   +P +  RP    G  +  EP A+   
Sbjct: 544 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 600

Query: 88  SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141
             D            DKG  G++  +G         PGPPG  G +G  G I P
Sbjct: 601 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 641



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 122 GLPGPPGPPGPQGPPGP 138
           G PG PG  G  GPPGP
Sbjct: 661 GAPGQPGMAGVDGPPGP 677



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
           KG  G K  RG+  ++   G  GP GP G  GP G   P     ++ +L + G      R
Sbjct: 789 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 848

Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189
             P+  T  P  P A         AG+
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGK 875



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%)

Query: 30  TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89
           TG R    A   + K  P+ G      PP   GE  P     P G    + P        
Sbjct: 885 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 943

Query: 90  DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138
            P             G  G+   +GK         GPPGP G  GP GP
Sbjct: 944 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 974



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%)

Query: 105  GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137
            G  G++ S G A  +  GLPG      PPGP G +G PG
Sbjct: 1057 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1093



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 122  GLPGPPGPPGPQGPPGP 138
            GLPGP GP G +G  GP
Sbjct: 1504 GLPGPQGPKGNKGSTGP 1520


>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
           sapiens]
          Length = 238

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 5/33 (15%)

Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137
           G  G+   RGKA     GL GPPGPPGP+GPPG
Sbjct: 55  GAKGEVGRRGKA-----GLRGPPGPPGPRGPPG 82



 Score = 33.1 bits (74), Expect = 0.41
 Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 122 GLPGPPGPPGPQGP-PGPIIP 141
           G PG PGPPGP GP PG + P
Sbjct: 82  GEPGRPGPPGPPGPGPGGVAP 102



 Score = 28.5 bits (62), Expect = 10.0
 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 34/154 (22%)

Query: 124 PGPPGPPGPQGPPG--PIIPPEALLKEFQLLLKGAVRQRERA--EPEPCTCGPAGPVAAS 179
           P  P  PGP G P   P  PP A         KG V +R +A     P   GP GP    
Sbjct: 34  PHGPRGPGPDGAPASVPPFPPGA---------KGEVGRRGKAGLRGPPGPPGPRGPPGEP 84

Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGV 239
             P                      P  PGP      A ++ R+   A + R   HE G 
Sbjct: 85  GRPGP------------------PGPPGPGPGGVAPAAGYVPRIAFYAGLRRP--HE-GY 123

Query: 240 YYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALA 273
             L   +     G      SG++  P+ G Y  A
Sbjct: 124 EVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFA 157


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 101 QSDKGVNGKKRSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPP 142
           +  KG  G K SRG   K       G PGPPGPPG +G PGP  PP
Sbjct: 499 KGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPP 544



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 101 QSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142
           + D+G  G     G K +K + G PGPPGP G +GP GP  PP
Sbjct: 451 RGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPP 493



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 26/111 (23%)

Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162
           ++G  G K S+G   K   G PG PGP GP G PGP  PP                    
Sbjct: 495 ERGGKGSKGSQGP--KGSRGSPGKPGPQGPSGDPGPPGPP-------------------G 533

Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
            E  P   GP GP       +  T GE        +  L   P  PGP+ P
Sbjct: 534 KEGLP---GPQGP--PGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGP 579



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 122 GLPGPPGPPGPQGPPGPIIPPEALL 146
           GLPG PG PGP+GPPGP  P  A++
Sbjct: 566 GLPGVPGMPGPKGPPGPPGPSGAVV 590



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 122 GLPGPPGPPGPQGPPGPIIP 141
           G+PGP GPPGP GP G ++P
Sbjct: 572 GMPGPKGPPGPPGPSGAVVP 591



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 123 LPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP-EPCTCGPAGPVAASLA 181
           L GPPGP GP+G  G   PP     + Q   KG     E+ EP  P   G  GP+  +  
Sbjct: 441 LQGPPGPRGPRGDRGSQGPPGPTGNKGQ---KG-----EKGEPGPPGPAGERGPIGPA-G 491

Query: 182 PVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213
           P     G+      G       +P  PGP+ P
Sbjct: 492 PPGERGGKGSKGSQGP-KGSRGSPGKPGPQGP 522



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%)

Query: 122 GLPGP---PGPPGPQGPPGPIIPP 142
           G+PGP   PG PG  G PGP  PP
Sbjct: 557 GVPGPRGLPGLPGVPGMPGPKGPP 580



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 122 GLPGPPGPPGPQGPPGPI 139
           G  GPPGPPGP G   P+
Sbjct: 575 GPKGPPGPPGPSGAVVPL 592


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,793,095
Number of Sequences: 37866
Number of extensions: 1166005
Number of successful extensions: 23745
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 8511
Number of HSP's gapped (non-prelim): 7602
length of query: 367
length of database: 18,247,518
effective HSP length: 104
effective length of query: 263
effective length of database: 14,309,454
effective search space: 3763386402
effective search space used: 3763386402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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