BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sapiens] (367 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169164936 PREDICTED: family with sequence similarity 132, mem... 744 0.0 gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap... 744 0.0 gi|121949746 family with sequence similarity 132, member A [Homo... 172 4e-43 gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 50 2e-06 gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 50 2e-06 gi|50511941 EMI domain containing 1 [Homo sapiens] 50 2e-06 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 49 5e-06 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 49 5e-06 gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 49 5e-06 gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] 49 5e-06 gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 48 2e-05 gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 48 2e-05 gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 48 2e-05 gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 45 8e-05 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 1e-04 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 1e-04 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 1e-04 gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 45 1e-04 gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 45 1e-04 gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 45 1e-04 gi|118498339 EMI domain containing 2 [Homo sapiens] 44 2e-04 gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 44 2e-04 gi|5729785 complement component 1, q subcomponent-like 1 [Homo s... 44 2e-04 gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 44 2e-04 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 3e-04 gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 44 3e-04 gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 44 3e-04 gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 44 3e-04 gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 43 4e-04 gi|18641360 collectin sub-family member 12 [Homo sapiens] 43 4e-04 >gi|169164936 PREDICTED: family with sequence similarity 132, member B [Homo sapiens] Length = 367 Score = 744 bits (1920), Expect = 0.0 Identities = 367/367 (100%), Positives = 367/367 (100%) Query: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA Sbjct: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60 Query: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK Sbjct: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120 Query: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL Sbjct: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180 Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY Sbjct: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240 Query: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC Sbjct: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300 Query: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF Sbjct: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360 Query: 361 SAVLLGV 367 SAVLLGV Sbjct: 361 SAVLLGV 367 >gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sapiens] Length = 367 Score = 744 bits (1920), Expect = 0.0 Identities = 367/367 (100%), Positives = 367/367 (100%) Query: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA Sbjct: 1 MTARLVLSPTGLCFFLSTYGCSSGRILLVTGGRHLGSASPMSAKSRPRCGPFPRSHPPRA 60 Query: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK Sbjct: 61 GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK 120 Query: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL Sbjct: 121 FGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180 Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY Sbjct: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVY 240 Query: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC Sbjct: 241 YLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGPPRPRDHLRLLIC 300 Query: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF Sbjct: 301 IQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNASGCSLTVRSGSHF 360 Query: 361 SAVLLGV 367 SAVLLGV Sbjct: 361 SAVLLGV 367 >gi|121949746 family with sequence similarity 132, member A [Homo sapiens] Length = 302 Score = 172 bits (436), Expect = 4e-43 Identities = 122/318 (38%), Positives = 162/318 (50%), Gaps = 53/318 (16%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPT-AERAHSVDPRDAWMLFVRQSDKGVNGK 109 P R+ PP A A E GL +P+ A D W+ FVR+ D G + Sbjct: 35 PGQRADPPNATASASSRE-----GLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGAL-R 88 Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCT 169 KR + KK + L GPPGPPG + + E LL EFQ LLK A +R Sbjct: 89 KRCGSRDKKPR-DLFGPPGPPGAE------VTAETLLHEFQELLKEATERR--------- 132 Query: 170 CGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPRVEAAFLCRLRRDAL 228 + L PL P G V AF CRL+ Sbjct: 133 -----------------------------FSGLLDPLLPQGAGLRLVGEAFHCRLQGPRR 163 Query: 229 VERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGP 288 V++R L EL + P A+GAF RG GL+L SG++ APV+G + +A+LHV E + Sbjct: 164 VDKRTLVELHGFQAPAAQGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKAR 223 Query: 289 PRPRDHLRLLICIQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNAS 348 R RD + +LICI+S CQR+ LEA+ GLES+S +FT+ V G+L LQ GQ+ SVF+DN S Sbjct: 224 LRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGS 283 Query: 349 GCSLTVRSGSHFSAVLLG 366 G LT+++GS FS +LLG Sbjct: 284 GAVLTIQAGSSFSGLLLG 301 >gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] Length = 389 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAV--FQEPTAERAHSVDPR 92 LG P S + P P+ P G A S++ +A+ F P + + R Sbjct: 93 LGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESR 152 Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 +S++G +G +++ K KK G PGP GPPGP GPPGP PP Sbjct: 153 RVRRNKRSKSNEGADGPVKNKKKGKKA--GPPGPNGPPGPPGPPGPQGPP 200 Score = 40.8 bits (94), Expect = 0.002 Identities = 15/16 (93%), Positives = 15/16 (93%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPGPQGPPG Sbjct: 215 GPPGPPGPPGPQGPPG 230 Score = 34.3 bits (77), Expect = 0.18 Identities = 12/14 (85%), Positives = 12/14 (85%) Query: 125 GPPGPPGPQGPPGP 138 GPPGPPGP GP GP Sbjct: 215 GPPGPPGPPGPQGP 228 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/17 (70%), Positives = 12/17 (70%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PGPPGP GP G GP Sbjct: 218 GPPGPPGPQGPPGLQGP 234 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPG QGP G Sbjct: 221 GPPGPQGPPGLQGPSG 236 >gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] Length = 391 Score = 50.4 bits (119), Expect = 2e-06 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAV--FQEPTAERAHSVDPR 92 LG P S + P P+ P G A S++ +A+ F P + + R Sbjct: 93 LGGLDPDSPITSHLGQPSPKQQPLEPGEAALHSDSQDGHQMALLNFFFPDEKPYSEEESR 152 Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 +S++G +G +++ K KK G PGP GPPGP GPPGP PP Sbjct: 153 RVRRNKRSKSNEGADGPVKNKKKGKKA--GPPGPNGPPGPPGPPGPQGPP 200 Score = 40.8 bits (94), Expect = 0.002 Identities = 15/16 (93%), Positives = 15/16 (93%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPGPQGPPG Sbjct: 215 GPPGPPGPPGPQGPPG 230 Score = 34.3 bits (77), Expect = 0.18 Identities = 12/14 (85%), Positives = 12/14 (85%) Query: 125 GPPGPPGPQGPPGP 138 GPPGPPGP GP GP Sbjct: 215 GPPGPPGPPGPQGP 228 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/17 (70%), Positives = 12/17 (70%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PGPPGP GP G GP Sbjct: 218 GPPGPPGPQGPPGLQGP 234 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPG QGP G Sbjct: 221 GPPGPQGPPGLQGPSG 236 >gi|50511941 EMI domain containing 1 [Homo sapiens] Length = 443 Score = 50.4 bits (119), Expect = 2e-06 Identities = 40/130 (30%), Positives = 51/130 (39%), Gaps = 10/130 (7%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110 P P PP A G G PT + + M + G G Sbjct: 176 PAPLWGPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGM----RGPPGPQGPP 231 Query: 111 RSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPPEALLKEF-QLLLKGAVRQRERAEP 165 S G+A + + G PGPPGPPGP GPP P+ PP A + + LL + P Sbjct: 232 GSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLSNTFTETNNHWP 291 Query: 166 EPCTCGPAGP 175 + T GP GP Sbjct: 292 QGPT-GPPGP 300 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/108 (32%), Positives = 38/108 (35%), Gaps = 14/108 (12%) Query: 36 GSASPMSAKSRPRCGPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94 GS PM + P GP P P RAG P E P P P Sbjct: 214 GSRGPMGMRGPP--GPQGPPGSPGRAGAVGTPGERGPPG-------PPGPPGPPGPPAPV 264 Query: 95 WMLFVRQSDKG----VNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 R S G N + + G PGPPGP GP GPPGP Sbjct: 265 GPPHARISQHGDPLLSNTFTETNNHWPQGPTGPPGPPGPMGPPGPPGP 312 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 KG++G +G+ + L+ G PGP G G +G PGP Sbjct: 331 KGISGHPGEKGE-RGLR-GEPGPQGSAGQRGEPGP 363 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 49.3 bits (116), Expect = 5e-06 Identities = 50/134 (37%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 47 PRCGP-FPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKG 105 P GP FP + P A GEA P+ A P G Q P E P A +D G Sbjct: 361 PAGGPGFPGA--PGAKGEAGPTGARGPEGA---QGPRGEPGTPGSPGPAGASGNPGTD-G 414 Query: 106 VNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164 + G K S G G PGP GPPGPQG GP+ P + KG Q + E Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGE 472 Query: 165 PEPCTCGPAGPVAA 178 P GPAGP A Sbjct: 473 P-----GPAGPQGA 481 Score = 45.4 bits (106), Expect = 8e-05 Identities = 41/118 (34%), Positives = 52/118 (44%), Gaps = 13/118 (11%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER-A 163 G G K +G+ +K + GP GPPGPQGP G P + + KGA R R Sbjct: 98 GQPGPKGQKGEPGDIK-DIVGPKGPPGPQGPAGEQGPRGDRGDKGE---KGAPGPRGRDG 153 Query: 164 EP-EPCTCGPAGPVAASLAP------VSATAGEDDDDVVGDVLALLAAPLAP-GPRAP 213 EP P GP GP P + AG D+ G L ++ P+ P GPR P Sbjct: 154 EPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGP 211 Score = 45.1 bits (105), Expect = 1e-04 Identities = 58/203 (28%), Positives = 72/203 (35%), Gaps = 29/203 (14%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 + DKG G RG+ + G PG PGPPGP GPPG P L F + G ++ Sbjct: 137 RGDKGEKGAPGPRGRDGEP--GTPGNPGPPGPPGPPG----PPGLGGNFAAQMAGGFDEK 190 Query: 161 ERAEPEPCTCGPAGPVAASLAPVSATA----------GEDDDDVVGDVLALLAAPLAPGP 210 GP GP+ P A A GE + V + P PG Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK 250 Query: 211 RAPRVEAAFLCRL-RRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAG 268 EA + R + A G LP +G R PGL+ G+ AP V G Sbjct: 251 PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG-HRGYPGLDGAKGEAGAPGVKG 309 Query: 269 FYALAATLHVALGEPPRRGPPRP 291 G P G P P Sbjct: 310 ----------ESGSPGENGSPGP 322 Score = 42.4 bits (98), Expect = 7e-04 Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 39 SPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLF 98 +P R GP P A GE PAG A + ER + P A Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG 837 Query: 99 VRQSDKGVNGKKRSRGKA-KKLKFGLPGPPGP---PGPQGPPGPIIPPEA 144 +D G G K +G+A +K G PGP GP PGPQGP G P A Sbjct: 838 PPGAD-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 886 Score = 42.0 bits (97), Expect = 9e-04 Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE---PEPCTCGPAGPVAA 178 G PGP GPPGP GP G P A + + GA R E A+ EP T G GP A Sbjct: 348 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA-RGPEGAQGPRGEPGTPGSPGPAGA 406 Query: 179 SLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 S P T G + AP PGPR P Sbjct: 407 SGNP--GTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439 Score = 41.6 bits (96), Expect = 0.001 Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 43/178 (24%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD--------PRDAWMLFVRQ 101 GP + P A G++ P GL P E+ D P L ++ Sbjct: 921 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 980 Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---------PPGPIIPPEALLKEFQLL 152 G+ G++ RG GLPGP G PG QG PPGP+ PP Sbjct: 981 GIVGLPGQRGERGFP-----GLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--------- 1026 Query: 153 LKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210 L G + R E P GP G A A V GE + AP APGP Sbjct: 1027 LTGPAGEPGR-EGSPGADGPPGRDGA--AGVKGDRGE---------TGAVGAPGAPGP 1072 Score = 40.4 bits (93), Expect = 0.003 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 32/108 (29%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP + G P + PAG Q P R DKG G+ Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG----------------DKGEAGE 1123 Query: 110 KRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP 141 RG F GLPGPPGP G P+GPPGP+ P Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1171 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144 G G+ G A G PG PGPPGP GPPGP I A Sbjct: 1188 GPRGRSGETGPA-----GPPGNPGPPGPPGPPGPGIDMSA 1222 Score = 37.7 bits (86), Expect = 0.016 Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 10/92 (10%) Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106 P P + P +G P P EP E + D R GV Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAAGV 1054 Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G + G G PG PGPPG GP GP Sbjct: 1055 KGDRGETGAV-----GAPGAPGPPGSPGPAGP 1081 Score = 37.4 bits (85), Expect = 0.021 Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 17/114 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGE-AEPSEANRPA--GLAVFQEPTAERAHSVDPR 92 G P A+ +P FP P A GE + E P GL E + P Sbjct: 588 GPPGPQGARGQPGVMGFPG--PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645 Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPI-IPPEA 144 A G G++ +G F GLPGPPGPPG G PG +P EA Sbjct: 646 PA----------GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 689 Score = 37.4 bits (85), Expect = 0.021 Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 39/156 (25%) Query: 42 SAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAER--AHSVDPRDAWMLFV 99 SA +R G + PP G A P A+ G Q ++ A + P+ Sbjct: 814 SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873 Query: 100 RQSDKGVNGKKRSRGK----------------AKKLKFGLPGPPGPPGPQGPPGPIIPPE 143 Q GV G K +RG G PGPPGPPGP G GP Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP----- 928 Query: 144 ALLKEFQLLLKGAVRQRERAEP----EPCTCGPAGP 175 KGA + + P EP GPAGP Sbjct: 929 ----------KGA--RGDSGPPGRAGEPGLQGPAGP 952 Score = 37.0 bits (84), Expect = 0.028 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 15/111 (13%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G A P + + P P G P E +P V E A V PR Sbjct: 645 GPAGPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL--VGPR--- 698 Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKF--GLPGPPGPPGPQGPPGPIIPPEA 144 ++G G++ S G A+ L+ GLPG PG GP+G GP PP A Sbjct: 699 ------GERGFPGERGSPG-AQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 742 Score = 36.2 bits (82), Expect = 0.048 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPR-- 92 +G P + P FP AG + P E P+GLA + + +P Sbjct: 500 VGPIGPPGERGAPGNRGFP-GQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLP 557 Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 A L R D G GK G + G PGPPGP G +G PG Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGE--DGRPGPPGPQGARGQPG 600 Score = 35.8 bits (81), Expect = 0.062 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 GP PR P G + EA +P G A + P + P + V+ +G G Sbjct: 237 GPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPGVK-GHRGYPG 294 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPC 168 ++G+A G+ G G PG G PGP+ P + + GA R + +P Sbjct: 295 LDGAKGEAGAP--GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN-DGQPG 351 Query: 169 TCGPAGPVAASLAP 182 GP GPV + P Sbjct: 352 PAGPPGPVGPAGGP 365 Score = 34.7 bits (78), Expect = 0.14 Identities = 33/107 (30%), Positives = 36/107 (33%), Gaps = 19/107 (17%) Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90 GG LG PR P P P G + P E P P R Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG----VSGPMGPRGPPGP 247 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 P + D G GK GKA G GPPGP G +G PG Sbjct: 248 PG-------KPGDDGEAGKP---GKA-----GERGPPGPQGARGFPG 279 Score = 34.7 bits (78), Expect = 0.14 Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 28/94 (29%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181 G G PGP GPQG PGP + A EP GP GP A Sbjct: 468 GPKGEPGPAGPQGAPGP----------------AGEEGKRGARGEPGGVGPIGPPGERGA 511 Query: 182 PVS-ATAGEDDDDVVGDVLALLAAPL-APGPRAP 213 P + G+D LA P APG R P Sbjct: 512 PGNRGFPGQDG----------LAGPKGAPGERGP 535 Score = 34.3 bits (77), Expect = 0.18 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110 P P + G + P EA P + P ER + R + Q +G+ G Sbjct: 671 PGPPGEGGKPGDQGVPGEAGAPGLVG----PRGERGFPGE-RGSPGAQGLQGPRGLPGTP 725 Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPG 137 + G G GP GPPG QGPPG Sbjct: 726 GTDGPK-----GASGPAGPPGAQGPPG 747 Score = 32.7 bits (73), Expect = 0.53 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 15/36 (41%) Query: 122 GLPGPPGPPGPQ---------------GPPGPIIPP 142 G+PGP GPPGP+ GPPGP PP Sbjct: 1179 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1214 Score = 31.6 bits (70), Expect = 1.2 Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 34/126 (26%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116 P A G A P A P GL Q ER + G+ G K RG Sbjct: 730 PKGASGPAGPPGAQGPPGL---QGMPGERGAA----------------GIAGPKGDRGDV 770 Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176 + G G PG G +G GPI PP A E+ E P GPAG Sbjct: 771 GEK--GPEGAPGKDGGRGLTGPIGPPGP-----------AGANGEKGEVGP--PGPAGSA 815 Query: 177 AASLAP 182 A AP Sbjct: 816 GARGAP 821 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 G +G K + G A G PG GPPG QG PG Sbjct: 726 GTDGPKGASGPA-----GPPGAQGPPGLQGMPG 753 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 49.3 bits (116), Expect = 5e-06 Identities = 50/134 (37%), Positives = 57/134 (42%), Gaps = 15/134 (11%) Query: 47 PRCGP-FPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKG 105 P GP FP + P A GEA P+ A P G Q P E P A +D G Sbjct: 292 PAGGPGFPGA--PGAKGEAGPTGARGPEGA---QGPRGEPGTPGSPGPAGASGNPGTD-G 345 Query: 106 VNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164 + G K S G G PGP GPPGPQG GP+ P + KG Q + E Sbjct: 346 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKG--EQGPKGE 403 Query: 165 PEPCTCGPAGPVAA 178 P GPAGP A Sbjct: 404 P-----GPAGPQGA 412 Score = 45.8 bits (107), Expect = 6e-05 Identities = 70/259 (27%), Positives = 87/259 (33%), Gaps = 42/259 (16%) Query: 48 RCGPFPRSHPPRAGGEAEPSEANR---PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDK 104 RC P G + EP + P G Q P E+ D + DK Sbjct: 22 RCQGQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD----------RGDK 71 Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164 G G RG+ + G PG PGPPGP GPPG P L F + G ++ Sbjct: 72 GEKGAPGPRGRDGEP--GTPGNPGPPGPPGPPG----PPGLGGNFAAQMAGGFDEKAGGA 125 Query: 165 PEPCTCGPAGPVAASLAPVSATA----------GEDDDDVVGDVLALLAAPLAPGPRAPR 214 GP GP+ P A A GE + V + P PG Sbjct: 126 QLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD 185 Query: 215 VEAAFLCRL-RRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAGFYAL 272 EA + R + A G LP +G R PGL+ G+ AP V G Sbjct: 186 GEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKG-HRGYPGLDGAKGEAGAPGVKG---- 240 Query: 273 AATLHVALGEPPRRGPPRP 291 G P G P P Sbjct: 241 ------ESGSPGENGSPGP 253 Score = 42.4 bits (98), Expect = 7e-04 Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 39 SPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLF 98 +P R GP P A GE PAG A + ER + P A Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAG 768 Query: 99 VRQSDKGVNGKKRSRGKA-KKLKFGLPGPPGP---PGPQGPPGPIIPPEA 144 +D G G K +G+A +K G PGP GP PGPQGP G P A Sbjct: 769 PPGAD-GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGA 817 Score = 42.0 bits (97), Expect = 9e-04 Identities = 37/95 (38%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE---PEPCTCGPAGPVAA 178 G PGP GPPGP GP G P A + + GA R E A+ EP T G GP A Sbjct: 279 GQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA-RGPEGAQGPRGEPGTPGSPGPAGA 337 Query: 179 SLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 S P T G + AP PGPR P Sbjct: 338 SGNP--GTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370 Score = 41.6 bits (96), Expect = 0.001 Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 43/178 (24%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD--------PRDAWMLFVRQ 101 GP + P A G++ P GL P E+ D P L ++ Sbjct: 852 GPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQR 911 Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---------PPGPIIPPEALLKEFQLL 152 G+ G++ RG GLPGP G PG QG PPGP+ PP Sbjct: 912 GIVGLPGQRGERGFP-----GLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--------- 957 Query: 153 LKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210 L G + R E P GP G A A V GE + AP APGP Sbjct: 958 LTGPAGEPGR-EGSPGADGPPGRDGA--AGVKGDRGE---------TGAVGAPGAPGP 1003 Score = 40.4 bits (93), Expect = 0.003 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 32/108 (29%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP + G P + PAG Q P R DKG G+ Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG----------------DKGEAGE 1054 Query: 110 KRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP 141 RG F GLPGPPGP G P+GPPGP+ P Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGP 1102 Score = 38.9 bits (89), Expect = 0.007 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144 G G+ G A G PG PGPPGP GPPGP I A Sbjct: 1119 GPRGRSGETGPA-----GPPGNPGPPGPPGPPGPGIDMSA 1153 Score = 37.7 bits (86), Expect = 0.016 Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 10/92 (10%) Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106 P P + P +G P P EP E + D R GV Sbjct: 931 PSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG-----RDGAAGV 985 Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G + G G PG PGPPG GP GP Sbjct: 986 KGDRGETGAV-----GAPGAPGPPGSPGPAGP 1012 Score = 37.4 bits (85), Expect = 0.021 Identities = 37/114 (32%), Positives = 45/114 (39%), Gaps = 17/114 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGE-AEPSEANRPA--GLAVFQEPTAERAHSVDPR 92 G P A+ +P FP P A GE + E P GL E + P Sbjct: 519 GPPGPQGARGQPGVMGFPG--PKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576 Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPI-IPPEA 144 A G G++ +G F GLPGPPGPPG G PG +P EA Sbjct: 577 PA----------GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEA 620 Score = 37.4 bits (85), Expect = 0.021 Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 39/156 (25%) Query: 42 SAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAER--AHSVDPRDAWMLFV 99 SA +R G + PP G A P A+ G Q ++ A + P+ Sbjct: 745 SAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 804 Query: 100 RQSDKGVNGKKRSRGK----------------AKKLKFGLPGPPGPPGPQGPPGPIIPPE 143 Q GV G K +RG G PGPPGPPGP G GP Sbjct: 805 PQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGP----- 859 Query: 144 ALLKEFQLLLKGAVRQRERAEP----EPCTCGPAGP 175 KGA + + P EP GPAGP Sbjct: 860 ----------KGA--RGDSGPPGRAGEPGLQGPAGP 883 Score = 37.0 bits (84), Expect = 0.028 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 15/111 (13%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G A P + + P P G P E +P V E A V PR Sbjct: 576 GPAGPAGERGE-QGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL--VGPR--- 629 Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKF--GLPGPPGPPGPQGPPGPIIPPEA 144 ++G G++ S G A+ L+ GLPG PG GP+G GP PP A Sbjct: 630 ------GERGFPGERGSPG-AQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 673 Score = 36.2 bits (82), Expect = 0.048 Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 35 LGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPR-- 92 +G P + P FP AG + P E P+GLA + + +P Sbjct: 431 VGPIGPPGERGAPGNRGFP-GQDGLAGPKGAPGERG-PSGLAGPKGANGDPGRPGEPGLP 488 Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 A L R D G GK G + G PGPPGP G +G PG Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGE--DGRPGPPGPQGARGQPG 531 Score = 35.8 bits (81), Expect = 0.062 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 GP PR P G + EA +P G A + P + P + V+ +G G Sbjct: 168 GPMGPRGPPGPPGKPGDDGEAGKP-GKAGERGPPGPQGARGFPGTPGLPGVK-GHRGYPG 225 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPC 168 ++G+A G+ G G PG G PGP+ P + + GA R + +P Sbjct: 226 LDGAKGEAGAP--GVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGN-DGQPG 282 Query: 169 TCGPAGPVAASLAP 182 GP GPV + P Sbjct: 283 PAGPPGPVGPAGGP 296 Score = 34.7 bits (78), Expect = 0.14 Identities = 33/107 (30%), Positives = 36/107 (33%), Gaps = 19/107 (17%) Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90 GG LG PR P P P G + P E P P R Sbjct: 123 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPG----VSGPMGPRGPPGP 178 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 P + D G GK GKA G GPPGP G +G PG Sbjct: 179 PG-------KPGDDGEAGKP---GKA-----GERGPPGPQGARGFPG 210 Score = 34.7 bits (78), Expect = 0.14 Identities = 31/94 (32%), Positives = 34/94 (36%), Gaps = 28/94 (29%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181 G G PGP GPQG PGP + A EP GP GP A Sbjct: 399 GPKGEPGPAGPQGAPGP----------------AGEEGKRGARGEPGGVGPIGPPGERGA 442 Query: 182 PVS-ATAGEDDDDVVGDVLALLAAPL-APGPRAP 213 P + G+D LA P APG R P Sbjct: 443 PGNRGFPGQDG----------LAGPKGAPGERGP 466 Score = 34.3 bits (77), Expect = 0.18 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110 P P + G + P EA P + P ER + R + Q +G+ G Sbjct: 602 PGPPGEGGKPGDQGVPGEAGAPGLVG----PRGERGFPGE-RGSPGAQGLQGPRGLPGTP 656 Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPG 137 + G G GP GPPG QGPPG Sbjct: 657 GTDGPK-----GASGPAGPPGAQGPPG 678 Score = 32.7 bits (73), Expect = 0.53 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 15/36 (41%) Query: 122 GLPGPPGPPGPQ---------------GPPGPIIPP 142 G+PGP GPPGP+ GPPGP PP Sbjct: 1110 GIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP 1145 Score = 31.6 bits (70), Expect = 1.2 Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 34/126 (26%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116 P A G A P A P GL Q ER + G+ G K RG Sbjct: 661 PKGASGPAGPPGAQGPPGL---QGMPGERGAA----------------GIAGPKGDRGDV 701 Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176 + G G PG G +G GPI PP A E+ E P GPAG Sbjct: 702 GEK--GPEGAPGKDGGRGLTGPIGPPGP-----------AGANGEKGEVGP--PGPAGSA 746 Query: 177 AASLAP 182 A AP Sbjct: 747 GARGAP 752 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 G +G K + G A G PG GPPG QG PG Sbjct: 657 GTDGPKGASGPA-----GPPGAQGPPGLQGMPG 684 >gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] Length = 1838 Score = 49.3 bits (116), Expect = 5e-06 Identities = 60/184 (32%), Positives = 72/184 (39%), Gaps = 26/184 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTA--ERAHSVDP 91 G+A P+ RP P+ P AG + P E PAG Q P A V P Sbjct: 1096 GAAGPIGIPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGP 1151 Query: 92 RDAWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI-IPPEALLKEF 149 DKG G+ +G K K + G PGP GP GP G PGP E + Sbjct: 1152 PG------EDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQ 1205 Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 Q L + R P GP GPV L + GE + GDV + P PG Sbjct: 1206 QGLFGQKGDEGPRGFP-----GPPGPV--GLQGLPGPPGEKGE--TGDV-GQMGPPGPPG 1255 Query: 210 PRAP 213 PR P Sbjct: 1256 PRGP 1259 Score = 45.1 bits (105), Expect = 1e-04 Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 14/111 (12%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162 DKG +G+ G G PGP GPPG +GPPGP PE E KGA + Sbjct: 1364 DKGDDGEPGQTGSPGPT--GEPGPSGPPGKRGPPGP-AGPEGRQGE-----KGA-KGEAG 1414 Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 E P GP GP A P G D + + P +PGP P Sbjct: 1415 LEGPPGKTGPIGPQGAPGKP-----GPDGLRGIPGPVGEQGLPGSPGPDGP 1460 Score = 39.7 bits (91), Expect = 0.004 Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 39/139 (28%) Query: 36 GSASPMSAKSRP----RCGPFPRSHPPR-AGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90 GS P+ P GP + PP G + EP + P PT E S Sbjct: 1336 GSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPG-------PTGEPGPSGP 1388 Query: 91 PRDAWMLFV-----RQSDKGVNGKKRSRGKAKKLK----------------FGLPGP--- 126 P RQ +KG G+ G K G+PGP Sbjct: 1389 PGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGE 1448 Query: 127 ---PGPPGPQGPPGPIIPP 142 PG PGP GPPGP+ PP Sbjct: 1449 QGLPGSPGPDGPPGPMGPP 1467 Score = 37.7 bits (86), Expect = 0.016 Identities = 34/104 (32%), Positives = 42/104 (40%), Gaps = 12/104 (11%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSE--ANRPAGLAVFQEPTAERAHSVDPRD 93 GS P + + P P R P AG E E A AGL E + + P+ Sbjct: 1375 GSPGP-TGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGL----EGPPGKTGPIGPQG 1429 Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 A +G+ G +G G PGP GPPGP GPPG Sbjct: 1430 APGKPGPDGLRGIPGPVGEQGLP-----GSPGPDGPPGPMGPPG 1468 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 16/92 (17%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 + D+G+ G + S G K + G+ GP GP GP GPPG PP KGA Sbjct: 1500 KGDRGLPGPQGSSGP--KGEQGITGPSGPIGPPGPPGLPGPPGP---------KGAKGSS 1548 Query: 161 ERAEPE-----PCTCGPAGPVAASLAPVSATA 187 P+ P GP GP + P+ A Sbjct: 1549 GPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQA 1580 Score = 36.6 bits (83), Expect = 0.037 Identities = 53/185 (28%), Positives = 62/185 (33%), Gaps = 49/185 (26%) Query: 36 GSASPMSAKSRPRCG--PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRD 93 G PM + P P + P AG E + PAGL P R Sbjct: 1006 GETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPG-PAGLPGKDGPPGLRGFP----- 1059 Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153 D+G+ G + G LK G GPPGPPGP G PG P A Sbjct: 1060 --------GDRGLPGPVGALG----LK-GNEGPPGPPGPAGSPGERGPAGA--------- 1097 Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAP----VSATAGEDDDDVVGDVLALLAAPLA-P 208 G + R P+ GP GP AP AG D L P+ P Sbjct: 1098 AGPIGIPGRPGPQ----GPPGPAGEKGAPGEKGPQGPAGRDG----------LQGPVGLP 1143 Query: 209 GPRAP 213 GP P Sbjct: 1144 GPAGP 1148 Score = 36.2 bits (82), Expect = 0.048 Identities = 38/111 (34%), Positives = 45/111 (40%), Gaps = 17/111 (15%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAE--------RA 86 G A PM RP GP PP +GG + EP + P G Q P RA Sbjct: 559 GPAGPMGLTGRP--GPVG---PPGSGGLKGEPGDVG-PQGPRGVQGPPGPAGKPGRRGRA 612 Query: 87 HSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 S R + D+G +G G+ K G PGP GPPGP G G Sbjct: 613 GSDGARGMPGQTGPKGDRGFDGLAGLPGE--KGHRGDPGPSGPPGPPGDDG 661 Score = 36.2 bits (82), Expect = 0.048 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 19/93 (20%) Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106 P+ P +P G + EP EA P GL P + + +KG Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEP-GLPGEGGPPGPKGE-------------RGEKGE 1313 Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G + G G GPPG GP+G PGP+ Sbjct: 1314 SGPSGAAGPP-----GPKGPPGDDGPKGSPGPV 1341 Score = 35.8 bits (81), Expect = 0.062 Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 5/49 (10%) Query: 122 GLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEP 167 GLPG PGP G P+GPPGP PP + Q KG V + EP P Sbjct: 673 GLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNV--GPQGEPGP 719 Score = 35.4 bits (80), Expect = 0.082 Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 20/99 (20%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 + +G+ G+K G G PGPPGP G QG PGP P E KG Sbjct: 1203 RGQQGLFGQKGDEGPR-----GFPGPPGPVGLQGLPGP--PGE----------KGETGDV 1245 Query: 161 ERAEPEPCTCGPAGPVAASLA--PVSATAGEDDDDVVGD 197 + P P GP GP A A P G + VG+ Sbjct: 1246 GQMGP-PGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGE 1283 Score = 34.7 bits (78), Expect = 0.14 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query: 105 GVNGKKRSRGKAKKLKFGL--PGPPGPPGPQGPPGP 138 G G+K +G+ ++ G+ GPPGP GP G PGP Sbjct: 447 GPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGP 482 Score = 34.3 bits (77), Expect = 0.18 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137 GV G + G+ + + G PGPPGPPG QG PG Sbjct: 997 GVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPG 1030 Score = 33.1 bits (74), Expect = 0.41 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 15/103 (14%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 P HP + G E P P D L + +KG +G Sbjct: 761 PPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRG--LKGTKGEKGEDGFPGF 818 Query: 113 RG----KAKKLKFGLPGPPGPPGPQGP---------PGPIIPP 142 +G K + + G PGP G GP+GP PGP+ PP Sbjct: 819 KGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPP 861 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 8/34 (23%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G NG+K RG PG PGP G +GP GP Sbjct: 892 GANGEKGGRGT--------PGKPGPRGQRGPTGP 917 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIP 141 G+ G RG+ + K G PGPPG GPQGP G P Sbjct: 973 GLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGP 1010 Score = 32.7 bits (73), Expect = 0.53 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 105 GVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGPI 139 G NG G +K K G+PG PG PG QGP G I Sbjct: 850 GPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI 885 Score = 32.7 bits (73), Expect = 0.53 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 17/53 (32%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQ---------------GPPGPIIPP 142 G G+K G+A + GLPG GPPGP+ GPPGP PP Sbjct: 1279 GAVGEKGEPGEAGEP--GLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 10/45 (22%) Query: 104 KGVNGKKRSRGKA----------KKLKFGLPGPPGPPGPQGPPGP 138 +G+ GK +G + ++ G GP G PGP+GPPGP Sbjct: 924 RGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGP 968 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G G+K GK GLPG PG GP G PG PP Sbjct: 739 GPPGEKGPLGKP-----GLPGMPGADGPPGHPGKEGPP 771 Score = 30.8 bits (68), Expect = 2.0 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPG PG +GPPG Sbjct: 757 GADGPPGHPGKEGPPG 772 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142 ++ + L GP GP G G PGP+ PP Sbjct: 551 QQARLALRGPAGPMGLTGRPGPVGPP 576 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 958 GFPGPKGPPGPPGKDG 973 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/18 (66%), Positives = 12/18 (66%) Query: 125 GPPGPPGPQGPPGPIIPP 142 GP GP G QGPPGP P Sbjct: 589 GPQGPRGVQGPPGPAGKP 606 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 Q + G G++ + G GLPGP G GP G GP+ P Sbjct: 714 QGEPGPPGQQGNPGAQ-----GLPGPQGAIGPPGEKGPLGKP 750 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 101 QSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPG 137 + D+G G RG+ + G GP G PGP GPPG Sbjct: 825 KGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPG 862 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 ++G NG + G G GPPGPPG G PG Sbjct: 947 ERGPNGPQGPTGFP-----GPKGPPGPPGKDGLPG 976 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/21 (61%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 GL G PG GPQGP G PP Sbjct: 580 GLKGEPGDVGPQGPRGVQGPP 600 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 G++G+ +G G G PGPPG QG PG Sbjct: 700 GMDGQPGPKGNV-----GPQGEPGPPGQQGNPG 727 Score = 28.5 bits (62), Expect = 10.0 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 3/24 (12%) Query: 122 GLPGPP---GPPGPQGPPGPIIPP 142 GLPGPP GP G G PG PP Sbjct: 478 GLPGPPGTMGPTGQVGDPGERGPP 501 Score = 28.5 bits (62), Expect = 10.0 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 11/44 (25%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGP---------PGPQGPPGP 138 KG +G K +G + GL GPPG PGPQG GP Sbjct: 1473 KGDSGPKGEKGHPGLI--GLIGPPGEQGEKGDRGLPGPQGSSGP 1514 >gi|5901944 elastin microfibril interfacer 1 [Homo sapiens] Length = 1016 Score = 49.3 bits (116), Expect = 5e-06 Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 50/155 (32%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181 G GPPGPPG QGPPGP PP + K+ Q +G + GP GP Sbjct: 817 GEAGPPGPPGLQGPPGPAGPPGSPGKDGQ---EGPI-------------GPPGP------ 854 Query: 182 PVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYY 241 + + V G AP AP P+ A L R + R L G YY Sbjct: 855 -------QGEQGVEG-------APAAPVPQVAFSAALSLPRSEPGTVPFDRVLLNDGGYY 900 Query: 242 LPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATL 276 P+ +G + AP+AG Y L+A L Sbjct: 901 DPE--------------TGVFTAPLAGRYLLSAVL 921 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/18 (66%), Positives = 12/18 (66%) Query: 120 KFGLPGPPGPPGPQGPPG 137 K G GP GPPGPQG G Sbjct: 842 KDGQEGPIGPPGPQGEQG 859 >gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo sapiens] Length = 1650 Score = 47.8 bits (112), Expect = 2e-05 Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93 GS P+ RP P+ P AG + P E P G Q P + P Sbjct: 938 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 993 Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149 A DKG G +G K K + G PGPPGP GP G PG P A + Sbjct: 994 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1049 Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 KG R GP GP+ L + +GE + GDV + P PG Sbjct: 1050 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1097 Query: 210 PRAP 213 PR P Sbjct: 1098 PRGP 1101 Score = 45.8 bits (107), Expect = 6e-05 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP PP G A P+ A+ P G +P ++ + Q + GV G Sbjct: 1088 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1146 Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 + RG+ K + G PG PGPPGP+GP G Sbjct: 1147 RGERGE--KGESGQPGEPGPPGPKGPTG 1172 Score = 40.4 bits (93), Expect = 0.003 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 GP P P AG + EP A P G + R + P + Q G +G Sbjct: 1025 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1079 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 +K G G GPPGPPGP+GP GP Sbjct: 1080 EKGETGDV-----GPMGPPGPPGPRGPAGP 1104 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P A GE + +G + PT R PR A + KG +G G Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 788 Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138 + GLPGP GP PGP+GPPGP Sbjct: 789 ER--GLPGPQGPNGFPGPKGPPGP 810 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G P + P G + P A G+A P P GL + + P Sbjct: 1274 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1331 Query: 96 MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 ++ + D+G+ G + S G+ K + G+PG GP GP GPPG Sbjct: 1332 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1376 Score = 36.6 bits (83), Expect = 0.037 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G +G K RG+ + G PG PGP G GPPGP+ Sbjct: 1198 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1231 Score = 35.8 bits (81), Expect = 0.062 Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155 + G G S G+ G P GPPG PGPQGPPG +P E KG Sbjct: 919 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 968 Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197 + R+ + GPAGP AGED D VGD Sbjct: 969 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 1005 Score = 35.0 bits (79), Expect = 0.11 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137 GV G + + G+ + + G PGPPGPPG QG PG Sbjct: 839 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 872 Score = 34.7 bits (78), Expect = 0.14 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 56 HPPRAGGEAEPSEANRPAGLAV-FQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114 H + + +PS +RP Q+PT + + + + ++ G G K +G Sbjct: 242 HRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEI-LESSLLPPLEEAAHGPRGLKGEKG 300 Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 + L+ G+ GPPGP+GP G I PP Sbjct: 301 EPAVLEPGML-VEGPPGPEGPAGLIGPP 327 Score = 34.3 bits (77), Expect = 0.18 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%) Query: 62 GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121 G P P G A P ER H P Q G GK+ ++G Sbjct: 833 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 882 Query: 122 GLPGPPGPPGPQGPPG 137 PGPPG PG GP G Sbjct: 883 --PGPPGAPGKDGPAG 896 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G +G+K +GK GLPG PG GP G PG PP Sbjct: 581 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 613 Score = 32.3 bits (72), Expect = 0.69 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90 G PM RP GP + P GE+ P P GL R + Sbjct: 401 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 458 Query: 91 ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 P D + R D G+ G+K RG GLPGPPG G +G G I P Sbjct: 459 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 513 Score = 32.0 bits (71), Expect = 0.90 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Query: 57 PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114 PP G + EP E+ P G + P ER + + + G G K G Sbjct: 1122 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1172 Query: 115 ----KAKKLKFGLPGPPGPPGPQGPPG 137 K G PG PGPPG GP G Sbjct: 1173 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1199 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 +G+ G+ RG K G+PGPPG G GP GP Sbjct: 514 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 549 Score = 31.2 bits (69), Expect = 1.5 Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139 +K K G+PG PG PG QGP G + Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSL 727 Score = 31.2 bits (69), Expect = 1.5 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P G P+ N P G P +R + P RQ KG G + G Sbjct: 1213 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1262 Query: 118 KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142 K G GP G PGP G PPGP+ PP Sbjct: 1263 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1309 Score = 30.8 bits (68), Expect = 2.0 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%) Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163 G+ G RG+ + K G PGPPG GPQG G P ER Sbjct: 815 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 857 Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P GP GP P TAG+ + GD P APG P Sbjct: 858 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 894 Score = 30.8 bits (68), Expect = 2.0 Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 PR G +P E P + PT + +P D G G+ Sbjct: 1146 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1197 Query: 113 RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165 RG+ K G G PG PG GP G PP L K G+ ++ + +P Sbjct: 1198 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1257 Query: 166 --EPCTCGPAGPVAASLAP 182 P GP GP + P Sbjct: 1258 IGAPGKTGPVGPAGPAGKP 1276 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 GV G +G L G G PGPPG QG PG Sbjct: 539 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 569 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 800 GFPGPKGPPGPPGKDG 815 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142 ++ + L GPPGP G G PGP+ P Sbjct: 393 QQARLALRGPPGPMGYTGRPGPLGQP 418 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G G GPPG GPPG +I P Sbjct: 1397 GEKGVQGPPGHPGPPGEVIQP 1417 Score = 29.6 bits (65), Expect = 4.5 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP G PG +GPPG Sbjct: 331 GNPGPVGDPGERGPPG 346 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%) Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142 G GP GPPGP G P GPI PP Sbjct: 917 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 946 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPGPPG G PG Sbjct: 803 GPKGPPGPPGKDGLPG 818 Score = 28.5 bits (62), Expect = 10.0 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%) Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142 GLPG GP G P+GPPG PP Sbjct: 515 GLPGESGPRGLLGPKGPPGIPGPP 538 Score = 28.5 bits (62), Expect = 10.0 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 Q + G G++ + G GLPGP G GP G GP Sbjct: 556 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 588 Score = 28.5 bits (62), Expect = 10.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 + D+G G SRG+ GP GP G GP G PP + ++ +L + G Sbjct: 667 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 718 Query: 161 ERAEPEPCTCGPAGPVAA 178 R P+ P P A+ Sbjct: 719 GRQGPKGSLGFPGFPGAS 736 >gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo sapiens] Length = 1629 Score = 47.8 bits (112), Expect = 2e-05 Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93 GS P+ RP P+ P AG + P E P G Q P + P Sbjct: 917 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 972 Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149 A DKG G +G K K + G PGPPGP GP G PG P A + Sbjct: 973 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1028 Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 KG R GP GP+ L + +GE + GDV + P PG Sbjct: 1029 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1076 Query: 210 PRAP 213 PR P Sbjct: 1077 PRGP 1080 Score = 45.8 bits (107), Expect = 6e-05 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP PP G A P+ A+ P G +P ++ + Q + GV G Sbjct: 1067 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1125 Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 + RG+ K + G PG PGPPGP+GP G Sbjct: 1126 RGERGE--KGESGQPGEPGPPGPKGPTG 1151 Score = 40.4 bits (93), Expect = 0.003 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 GP P P AG + EP A P G + R + P + Q G +G Sbjct: 1004 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1058 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 +K G G GPPGPPGP+GP GP Sbjct: 1059 EKGETGDV-----GPMGPPGPPGPRGPAGP 1083 Score = 37.7 bits (86), Expect = 0.016 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 22/87 (25%) Query: 56 HPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK 115 H + + +PS +RP QEP ++ AH G G K +G+ Sbjct: 242 HRAQRSPQQQPSRLHRPQN----QEPQSQAAH-----------------GPRGLKGEKGE 280 Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPP 142 L+ G+ GPPGP+GP G I PP Sbjct: 281 PAVLEPGML-VEGPPGPEGPAGLIGPP 306 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P A GE + +G + PT R PR A + KG +G G Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 767 Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138 + GLPGP GP PGP+GPPGP Sbjct: 768 ER--GLPGPQGPNGFPGPKGPPGP 789 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G P + P G + P A G+A P P GL + + P Sbjct: 1253 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1310 Query: 96 MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 ++ + D+G+ G + S G+ K + G+PG GP GP GPPG Sbjct: 1311 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1355 Score = 36.6 bits (83), Expect = 0.037 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G +G K RG+ + G PG PGP G GPPGP+ Sbjct: 1177 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1210 Score = 35.8 bits (81), Expect = 0.062 Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155 + G G S G+ G P GPPG PGPQGPPG +P E KG Sbjct: 898 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 947 Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197 + R+ + GPAGP AGED D VGD Sbjct: 948 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 984 Score = 35.0 bits (79), Expect = 0.11 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137 GV G + + G+ + + G PGPPGPPG QG PG Sbjct: 818 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 851 Score = 34.3 bits (77), Expect = 0.18 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%) Query: 62 GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121 G P P G A P ER H P Q G GK+ ++G Sbjct: 812 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 861 Query: 122 GLPGPPGPPGPQGPPG 137 PGPPG PG GP G Sbjct: 862 --PGPPGAPGKDGPAG 875 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G +G+K +GK GLPG PG GP G PG PP Sbjct: 560 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 592 Score = 32.3 bits (72), Expect = 0.69 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90 G PM RP GP + P GE+ P P GL R + Sbjct: 380 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 437 Query: 91 ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 P D + R D G+ G+K RG GLPGPPG G +G G I P Sbjct: 438 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 492 Score = 32.0 bits (71), Expect = 0.90 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Query: 57 PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114 PP G + EP E+ P G + P ER + + + G G K G Sbjct: 1101 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1151 Query: 115 ----KAKKLKFGLPGPPGPPGPQGPPG 137 K G PG PGPPG GP G Sbjct: 1152 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1178 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 +G+ G+ RG K G+PGPPG G GP GP Sbjct: 493 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 528 Score = 31.2 bits (69), Expect = 1.5 Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139 +K K G+PG PG PG QGP G + Sbjct: 684 EKGKLGVPGLPGYPGRQGPKGSL 706 Score = 31.2 bits (69), Expect = 1.5 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P G P+ N P G P +R + P RQ KG G + G Sbjct: 1192 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1241 Query: 118 KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142 K G GP G PGP G PPGP+ PP Sbjct: 1242 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1288 Score = 30.8 bits (68), Expect = 2.0 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%) Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163 G+ G RG+ + K G PGPPG GPQG G P ER Sbjct: 794 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 836 Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P GP GP P TAG+ + GD P APG P Sbjct: 837 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 873 Score = 30.8 bits (68), Expect = 2.0 Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 PR G +P E P + PT + +P D G G+ Sbjct: 1125 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1176 Query: 113 RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165 RG+ K G G PG PG GP G PP L K G+ ++ + +P Sbjct: 1177 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1236 Query: 166 --EPCTCGPAGPVAASLAP 182 P GP GP + P Sbjct: 1237 IGAPGKTGPVGPAGPAGKP 1255 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 GV G +G L G G PGPPG QG PG Sbjct: 518 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 548 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 779 GFPGPKGPPGPPGKDG 794 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142 ++ + L GPPGP G G PGP+ P Sbjct: 372 QQARLALRGPPGPMGYTGRPGPLGQP 397 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G G GPPG GPPG +I P Sbjct: 1376 GEKGVQGPPGHPGPPGEVIQP 1396 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%) Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142 G GP GPPGP G P GPI PP Sbjct: 896 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 925 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPGPPG G PG Sbjct: 782 GPKGPPGPPGKDGLPG 797 Score = 28.5 bits (62), Expect = 10.0 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%) Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142 GLPG GP G P+GPPG PP Sbjct: 494 GLPGESGPRGLLGPKGPPGIPGPP 517 Score = 28.5 bits (62), Expect = 10.0 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 Q + G G++ + G GLPGP G GP G GP Sbjct: 535 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 567 Score = 28.5 bits (62), Expect = 10.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 + D+G G SRG+ GP GP G GP G PP + ++ +L + G Sbjct: 646 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 697 Query: 161 ERAEPEPCTCGPAGPVAA 178 R P+ P P A+ Sbjct: 698 GRQGPKGSLGFPGFPGAS 715 >gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo sapiens] Length = 1736 Score = 47.8 bits (112), Expect = 2e-05 Identities = 57/184 (30%), Positives = 69/184 (37%), Gaps = 26/184 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93 GS P+ RP P+ P AG + P E P G Q P + P Sbjct: 1024 GSGGPIGPPGRPG----PQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGV 1079 Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPI---IPPEALLKEF 149 A DKG G +G K K + G PGPPGP GP G PG P A + Sbjct: 1080 AG----EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQG 1135 Query: 150 QLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 KG R GP GP+ L + +GE + GDV + P PG Sbjct: 1136 HFGAKGDEGTRG-------FNGPPGPI--GLQGLPGPSGEKGE--TGDV-GPMGPPGPPG 1183 Query: 210 PRAP 213 PR P Sbjct: 1184 PRGP 1187 Score = 45.8 bits (107), Expect = 6e-05 Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP PP G A P+ A+ P G +P ++ + Q + GV G Sbjct: 1174 GPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGI-QGEPGVKGP 1232 Query: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 + RG+ K + G PG PGPPGP+GP G Sbjct: 1233 RGERGE--KGESGQPGEPGPPGPKGPTG 1258 Score = 40.4 bits (93), Expect = 0.003 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 GP P P AG + EP A P G + R + P + Q G +G Sbjct: 1111 GPIGPVGQPGAAGADGEPG-ARGPQGHFGAKGDEGTRGFNGPPGPIGL----QGLPGPSG 1165 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 +K G G GPPGPPGP+GP GP Sbjct: 1166 EKGETGDV-----GPMGPPGPPGPRGPAGP 1190 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P A GE + +G + PT R PR A + KG +G G Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQR-GPRGATG---KSGAKGTSGGDGPHGPPG 874 Query: 118 KLKFGLPGPPGP---PGPQGPPGP 138 + GLPGP GP PGP+GPPGP Sbjct: 875 ER--GLPGPQGPNGFPGPKGPPGP 896 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 9/107 (8%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G P + P G + P A G+A P P GL + + P Sbjct: 1360 GKPGPDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIG 1417 Query: 96 MLFV-----RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 ++ + D+G+ G + S G+ K + G+PG GP GP GPPG Sbjct: 1418 LIGPPGEQGEKGDRGLPGPQGSPGQ--KGEMGIPGASGPIGPGGPPG 1462 Score = 36.6 bits (83), Expect = 0.037 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G +G K RG+ + G PG PGP G GPPGP+ Sbjct: 1284 RGQDGAKGDRGEDGEP--GQPGSPGPTGENGPPGPL 1317 Score = 35.8 bits (81), Expect = 0.062 Identities = 36/105 (34%), Positives = 42/105 (40%), Gaps = 26/105 (24%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLP-GPPGPPGPQGPPGPI----IPPEALLKEFQLLLKG 155 + G G S G+ G P GPPG PGPQGPPG +P E KG Sbjct: 1005 EGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGE----------KG 1054 Query: 156 AV--RQRERAEPEPCTCGPAGPVAASLAPVSATAGED-DDDVVGD 197 + R+ + GPAGP AGED D VGD Sbjct: 1055 PIGPTGRDGVQGPVGLPGPAGP--------PGVAGEDGDKGEVGD 1091 Score = 35.0 bits (79), Expect = 0.11 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPG 137 GV G + + G+ + + G PGPPGPPG QG PG Sbjct: 925 GVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPG 958 Score = 34.3 bits (77), Expect = 0.18 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 12/76 (15%) Query: 62 GEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKF 121 G P P G A P ER H P Q G GK+ ++G Sbjct: 919 GPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEGTKGD------ 968 Query: 122 GLPGPPGPPGPQGPPG 137 PGPPG PG GP G Sbjct: 969 --PGPPGAPGKDGPAG 982 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G +G+K +GK GLPG PG GP G PG PP Sbjct: 667 GPHGEKGPQGKP-----GLPGMPGSDGPPGHPGKEGPP 699 Score = 32.3 bits (72), Expect = 0.69 Identities = 36/117 (30%), Positives = 43/117 (36%), Gaps = 15/117 (12%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAE---PSEANRPAGLAVFQEPTAERAHSVD-- 90 G PM RP GP + P GE+ P P GL R + Sbjct: 487 GPPGPMGYTGRP--GPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADG 544 Query: 91 ----PRDAWMLFVRQSD--KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 P D + R D G+ G+K RG GLPGPPG G +G G I P Sbjct: 545 ARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ--GLPGPPGEDGERGDDGEIGP 599 Score = 32.0 bits (71), Expect = 0.90 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G G K +G+ L+ G+ GPPGP+GP G I PP Sbjct: 377 GPRGLKGEKGEPAVLEPGML-VEGPPGPEGPAGLIGPP 413 Score = 32.0 bits (71), Expect = 0.90 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Query: 57 PPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114 PP G + EP E+ P G + P ER + + + G G K G Sbjct: 1208 PP--GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTG 1258 Query: 115 ----KAKKLKFGLPGPPGPPGPQGPPG 137 K G PG PGPPG GP G Sbjct: 1259 DDGPKGNPGPVGFPGDPGPPGEGGPRG 1285 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 104 KGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 +G+ G+ RG K G+PGPPG G GP GP Sbjct: 600 RGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 635 Score = 31.2 bits (69), Expect = 1.5 Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPI 139 +K K G+PG PG PG QGP G + Sbjct: 791 EKGKLGVPGLPGYPGRQGPKGSL 813 Score = 31.2 bits (69), Expect = 1.5 Identities = 30/107 (28%), Positives = 35/107 (32%), Gaps = 32/107 (29%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P G P+ N P G P +R + P RQ KG G + G Sbjct: 1299 PGQPGSPGPTGENGPPG------PLGKRGPAGSPGSEG----RQGGKGAKGDPGAIGAPG 1348 Query: 118 KL-KFGLPGPPGPPGPQG---------------------PPGPIIPP 142 K G GP G PGP G PPGP+ PP Sbjct: 1349 KTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPP 1395 Score = 30.8 bits (68), Expect = 2.0 Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 31/110 (28%) Query: 105 GVNGKKRSRGKAK-KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163 G+ G RG+ + K G PGPPG GPQG G P ER Sbjct: 901 GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGP-----------------MGERG 943 Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P GP GP P TAG+ + GD P APG P Sbjct: 944 HP-----GPPGPPGEQGLP--GTAGK--EGTKGDP----GPPGAPGKDGP 980 Score = 30.8 bits (68), Expect = 2.0 Identities = 36/139 (25%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 PR G +P E P + PT + +P D G G+ Sbjct: 1232 PRGERGEKGESGQPGEPGPPGP----KGPTGDDGPKGNPGPVGF----PGDPGPPGEGGP 1283 Query: 113 RGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR----ERAEP-- 165 RG+ K G G PG PG GP G PP L K G+ ++ + +P Sbjct: 1284 RGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGA 1343 Query: 166 --EPCTCGPAGPVAASLAP 182 P GP GP + P Sbjct: 1344 IGAPGKTGPVGPAGPAGKP 1362 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 GV G +G L G G PGPPG QG PG Sbjct: 625 GVRGMDGPQGPKGSL--GPQGEPGPPGQQGTPG 655 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 886 GFPGPKGPPGPPGKDG 901 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 117 KKLKFGLPGPPGPPGPQGPPGPIIPP 142 ++ + L GPPGP G G PGP+ P Sbjct: 479 QQARLALRGPPGPMGYTGRPGPLGQP 504 Score = 30.0 bits (66), Expect = 3.4 Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G G GPPG GPPG +I P Sbjct: 1483 GEKGVQGPPGHPGPPGEVIQP 1503 Score = 29.6 bits (65), Expect = 4.5 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP G PG +GPPG Sbjct: 417 GNPGPVGDPGERGPPG 432 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 9/30 (30%) Query: 122 GLPGPPGPPGPQGPP---------GPIIPP 142 G GP GPPGP G P GPI PP Sbjct: 1003 GNEGPSGPPGPAGSPGERGAAGSGGPIGPP 1032 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPGPPG G PG Sbjct: 889 GPKGPPGPPGKDGLPG 904 Score = 28.5 bits (62), Expect = 10.0 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%) Query: 122 GLPGPPGPPG---PQGPPGPIIPP 142 GLPG GP G P+GPPG PP Sbjct: 601 GLPGESGPRGLLGPKGPPGIPGPP 624 Score = 28.5 bits (62), Expect = 10.0 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 Q + G G++ + G GLPGP G GP G GP Sbjct: 642 QGEPGPPGQQGTPGTQ-----GLPGPQGAIGPHGEKGP 674 Score = 28.5 bits (62), Expect = 10.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 + D+G G SRG+ GP GP G GP G PP + ++ +L + G Sbjct: 753 KGDRGEVGVPGSRGE--------DGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYP 804 Query: 161 ERAEPEPCTCGPAGPVAA 178 R P+ P P A+ Sbjct: 805 GRQGPKGSLGFPGFPGAS 822 >gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] Length = 1388 Score = 45.4 bits (106), Expect = 8e-05 Identities = 20/41 (48%), Positives = 25/41 (60%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPII 140 R G+NG K ++G + G PG PGPPGP GPPG +I Sbjct: 910 RPGRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVI 950 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/93 (37%), Positives = 39/93 (41%), Gaps = 17/93 (18%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG-K 115 PP + GE P+ P G E VD A L + +KG G S G K Sbjct: 644 PPGSPGEDGPAGEPGPPG--------PEGQPGVD--GATGLPGMKGEKGARGPNGSVGEK 693 Query: 116 AKKLKFGLPGPP------GPPGPQGPPGPIIPP 142 GLPGPP GPPG GPPGP PP Sbjct: 694 GDPGNRGLPGPPGKKGQAGPPGVMGPPGPPGPP 726 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 ++G+ G +G+A G+ GPPGPPGP GPPGP Sbjct: 698 NRGLPGPPGKKGQAGPP--GVMGPPGPPGPPGPPGP 731 Score = 40.8 bits (94), Expect = 0.002 Identities = 15/18 (83%), Positives = 15/18 (83%) Query: 121 FGLPGPPGPPGPQGPPGP 138 FG PG PGPPGP GPPGP Sbjct: 1089 FGRPGDPGPPGPPGPPGP 1106 Score = 38.1 bits (87), Expect = 0.013 Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 5/29 (17%) Query: 122 GLPGPPG-----PPGPQGPPGPIIPPEAL 145 GLPGPPG PGP GPPGP PP L Sbjct: 1082 GLPGPPGFGRPGDPGPPGPPGPPGPPAIL 1110 Score = 34.7 bits (78), Expect = 0.14 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 29/85 (34%) Query: 97 LFVRQSDKGVNGKKRSRGK----AKKLKFGLPGPP--------------------GPPGP 132 L ++ + G++G G K +FGLPG P GPPG Sbjct: 877 LMGKKGEPGMHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGTKGDPGVIMQGPPGL 936 Query: 133 QGPPGPIIPPEALLKEFQLLLKGAV 157 GPPGP PP A++ +KGA+ Sbjct: 937 PGPPGPPGPPGAVIN-----IKGAI 956 Score = 33.5 bits (75), Expect = 0.31 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 17/100 (17%) Query: 128 GPPGPQGPPGPI--IPPEALLKEFQ---LLLKGAVRQR-------ERAEPEPCTCGPAGP 175 G P P GPP P+ + PE + Q + +KG + E P GP GP Sbjct: 527 GSPPPDGPPLPLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGP 586 Query: 176 VAASLAPVS-----ATAGEDDDDVVGDVLALLAAPLAPGP 210 A + A S + G D+VG L P PGP Sbjct: 587 TAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGP 626 Score = 32.7 bits (73), Expect = 0.53 Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 93 DAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP 135 + W+ ++ G+ G+ +G+ LPGPP P GP GP Sbjct: 544 ERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPVGP 586 Score = 32.7 bits (73), Expect = 0.53 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPP--GPPGPQGPPGPI 139 G+ G+K RG K + G+ G GPPGP+GPPG I Sbjct: 764 GLKGEKGDRGP--KGERGMDGASIVGPPGPRGPPGHI 798 Score = 32.7 bits (73), Expect = 0.53 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP--EALLKEFQLLLKG 155 K +K +GLPG G G QG GP PP A L+ F LKG Sbjct: 986 KGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKG 1028 Score = 32.7 bits (73), Expect = 0.53 Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 98 FVRQSDKGVNGKKRSRGKAKKL--KFGLPGPPGPPGPQGPPG 137 F R D G G G L LPGPPGPPG G PG Sbjct: 1089 FGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPG 1130 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/22 (59%), Positives = 16/22 (72%) Query: 116 AKKLKFGLPGPPGPPGPQGPPG 137 +++L G PGPPGPPG G PG Sbjct: 613 SEQLLRGPPGPPGPPGLPGIPG 634 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/16 (75%), Positives = 13/16 (81%) Query: 122 GLPGPPGPPGPQGPPG 137 GLPG PG PGP+GP G Sbjct: 829 GLPGLPGFPGPRGPKG 844 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/31 (45%), Positives = 16/31 (51%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPG 131 + +KG G K RG G PGP GPPG Sbjct: 766 KGEKGDRGPKGERGMDGASIVGPPGPRGPPG 796 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/17 (64%), Positives = 11/17 (64%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PG PG GP G PGP Sbjct: 643 GPPGSPGEDGPAGEPGP 659 Score = 28.5 bits (62), Expect = 10.0 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 27/93 (29%) Query: 122 GLPGPPGPPGPQGPPG-PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASL 180 GLPG PGP GP+G G P P LKG Q E+ EP G + Sbjct: 832 GLPGFPGPRGPKGDTGLPGFPG----------LKG--EQGEKGEP--------GAILTED 871 Query: 181 APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P+ G+ + + AP GP+ P Sbjct: 872 IPLERLMGKKGEP------GMHGAPGPMGPKGP 898 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138 R G+NG K +G+ L FG+ G PGPPGP GPPGP Sbjct: 1225 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 1265 Score = 42.7 bits (99), Expect = 5e-04 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%) Query: 101 QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157 + D+G G+K RG+ F LPGPPGPPGP+G PG + G Sbjct: 1327 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 1371 Query: 158 RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 + R +P P GP GP P G ++ P PGP P Sbjct: 1372 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429 Score = 42.0 bits (97), Expect = 9e-04 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%) Query: 32 GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84 G LG A + A +PR P P + PP AGG + E S + A+ Sbjct: 667 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 726 Query: 85 RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142 D W VR G + G K K G PG PGPPG GPPG P +P P Sbjct: 727 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 780 Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188 L PC P GP +L V G Sbjct: 781 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 805 Score = 42.0 bits (97), Expect = 9e-04 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141 + KG G +RG++ G GPPGPPGP GPPGP +P Sbjct: 982 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 1023 Score = 38.9 bits (89), Expect = 0.007 Identities = 14/16 (87%), Positives = 15/16 (93%) Query: 122 GLPGPPGPPGPQGPPG 137 GLPGPPGPPG +GPPG Sbjct: 950 GLPGPPGPPGREGPPG 965 Score = 38.9 bits (89), Expect = 0.007 Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132 + D+G G+K GK + GLPGPPGPPGP Sbjct: 1095 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 1126 Score = 38.5 bits (88), Expect = 0.010 Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 Q KG G + +G K G PG PGPP GPPGP++ + G+V Sbjct: 1092 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 1140 Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215 E P GPAGP S + + + G + + L P + + Sbjct: 1141 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 1200 Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270 E F G Y P +G R G PG+N G+ P G Sbjct: 1201 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 1244 Query: 271 ALAATLHVALGEPPRRGPPRP 291 +L + G P GPP P Sbjct: 1245 SLGFGMRGMPGPPGPPGPPGP 1265 Score = 37.7 bits (86), Expect = 0.016 Identities = 13/15 (86%), Positives = 14/15 (93%) Query: 123 LPGPPGPPGPQGPPG 137 +PGPPGPPGP GPPG Sbjct: 1420 VPGPPGPPGPPGPPG 1434 Score = 36.2 bits (82), Expect = 0.048 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%) Query: 35 LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90 LG A P + P+ P P P R G +P E +P T + Sbjct: 790 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 842 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 P D G G K G ++ GPPGP GP GPPGP Sbjct: 843 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 874 Score = 35.4 bits (80), Expect = 0.082 Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179 G PG PG PGP GPPG PP ++ L GA + + P GPAG S Sbjct: 944 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 998 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219 LA AG P PGP P + A F Sbjct: 999 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 1026 Score = 35.0 bits (79), Expect = 0.11 Identities = 13/15 (86%), Positives = 13/15 (86%) Query: 124 PGPPGPPGPQGPPGP 138 PGPPG PG QGPPGP Sbjct: 1282 PGPPGLPGNQGPPGP 1296 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%) Query: 122 GLPGPPGPP-------------GPQGPPGPIIPP 142 G PGPPGPP GP GPPGP PP Sbjct: 1400 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1433 Score = 34.3 bits (77), Expect = 0.18 Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%) Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166 GLPG GPPGP+G G + PP EA +K + A ++ ER EP Sbjct: 1286 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1345 Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P GP GP P G + + G P PGP+ P Sbjct: 1346 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 1387 Score = 33.1 bits (74), Expect = 0.41 Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%) Query: 36 GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90 G+ P A+ P + PP G P PAG + P A S D Sbjct: 986 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 1045 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150 P+ L + D GV G ++G+ G+PG PG PG +G GP P Sbjct: 1046 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 1094 Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203 KG R E+ +P +P GP GP PV + +D G VL++ Sbjct: 1095 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 1140 Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263 PGP A F + L G P +G +G G Sbjct: 1141 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 1184 Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291 +P G AL A GEP RGPP P Sbjct: 1185 SPDGG--ALGPAQKGAKGEPGFRGPPGP 1210 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPG G PG Sbjct: 903 GFPGPPGPPGVPGLPG 918 Score = 32.0 bits (71), Expect = 0.90 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPGP G G Sbjct: 1422 GPPGPPGPPGPPGTMG 1437 Score = 29.3 bits (64), Expect = 5.8 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174 G G PG PG G PG P P + K KG ER P P GP G Sbjct: 817 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 870 Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213 P S T + + G L L P PGP P Sbjct: 871 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 910 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143 L GP G PGP GPPG P +P E Sbjct: 898 LRGPRGFPGPPGPPGVPGLPGE 919 Score = 28.5 bits (62), Expect = 10.0 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%) Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129 + KG G+ RG K + G PG P G Sbjct: 1194 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 1253 Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178 PGP GPPGP PP + + + A R P GP GP A Sbjct: 1254 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 1299 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138 R G+NG K +G+ L FG+ G PGPPGP GPPGP Sbjct: 810 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 850 Score = 42.7 bits (99), Expect = 5e-04 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%) Query: 101 QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157 + D+G G+K RG+ F LPGPPGPPGP+G PG + G Sbjct: 912 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 956 Query: 158 RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 + R +P P GP GP P G ++ P PGP P Sbjct: 957 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014 Score = 42.0 bits (97), Expect = 9e-04 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%) Query: 32 GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84 G LG A + A +PR P P + PP AGG + E S + A+ Sbjct: 252 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 311 Query: 85 RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142 D W VR G + G K K G PG PGPPG GPPG P +P P Sbjct: 312 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 365 Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188 L PC P GP +L V G Sbjct: 366 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 390 Score = 42.0 bits (97), Expect = 9e-04 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141 + KG G +RG++ G GPPGPPGP GPPGP +P Sbjct: 567 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 608 Score = 38.9 bits (89), Expect = 0.007 Identities = 14/16 (87%), Positives = 15/16 (93%) Query: 122 GLPGPPGPPGPQGPPG 137 GLPGPPGPPG +GPPG Sbjct: 535 GLPGPPGPPGREGPPG 550 Score = 38.9 bits (89), Expect = 0.007 Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132 + D+G G+K GK + GLPGPPGPPGP Sbjct: 680 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 711 Score = 38.5 bits (88), Expect = 0.010 Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 Q KG G + +G K G PG PGPP GPPGP++ + G+V Sbjct: 677 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 725 Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215 E P GPAGP S + + + G + + L P + + Sbjct: 726 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 785 Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270 E F G Y P +G R G PG+N G+ P G Sbjct: 786 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 829 Query: 271 ALAATLHVALGEPPRRGPPRP 291 +L + G P GPP P Sbjct: 830 SLGFGMRGMPGPPGPPGPPGP 850 Score = 37.7 bits (86), Expect = 0.016 Identities = 13/15 (86%), Positives = 14/15 (93%) Query: 123 LPGPPGPPGPQGPPG 137 +PGPPGPPGP GPPG Sbjct: 1005 VPGPPGPPGPPGPPG 1019 Score = 36.2 bits (82), Expect = 0.048 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%) Query: 35 LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90 LG A P + P+ P P P R G +P E +P T + Sbjct: 375 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 427 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 P D G G K G ++ GPPGP GP GPPGP Sbjct: 428 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 459 Score = 35.4 bits (80), Expect = 0.082 Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179 G PG PG PGP GPPG PP ++ L GA + + P GPAG S Sbjct: 529 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 583 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219 LA AG P PGP P + A F Sbjct: 584 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 611 Score = 35.0 bits (79), Expect = 0.11 Identities = 13/15 (86%), Positives = 13/15 (86%) Query: 124 PGPPGPPGPQGPPGP 138 PGPPG PG QGPPGP Sbjct: 867 PGPPGLPGNQGPPGP 881 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%) Query: 122 GLPGPPGPP-------------GPQGPPGPIIPP 142 G PGPPGPP GP GPPGP PP Sbjct: 985 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1018 Score = 34.3 bits (77), Expect = 0.18 Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%) Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166 GLPG GPPGP+G G + PP EA +K + A ++ ER EP Sbjct: 871 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 930 Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P GP GP P G + + G P PGP+ P Sbjct: 931 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 972 Score = 33.1 bits (74), Expect = 0.41 Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%) Query: 36 GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90 G+ P A+ P + PP G P PAG + P A S D Sbjct: 571 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 630 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150 P+ L + D GV G ++G+ G+PG PG PG +G GP P Sbjct: 631 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 679 Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203 KG R E+ +P +P GP GP PV + +D G VL++ Sbjct: 680 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 725 Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263 PGP A F + L G P +G +G G Sbjct: 726 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 769 Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291 +P G AL A GEP RGPP P Sbjct: 770 SPDGG--ALGPAQKGAKGEPGFRGPPGP 795 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPG G PG Sbjct: 488 GFPGPPGPPGVPGLPG 503 Score = 32.0 bits (71), Expect = 0.90 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPGP G G Sbjct: 1007 GPPGPPGPPGPPGTMG 1022 Score = 29.3 bits (64), Expect = 5.8 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174 G G PG PG G PG P P + K KG ER P P GP G Sbjct: 402 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 455 Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213 P S T + + G L L P PGP P Sbjct: 456 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 495 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143 L GP G PGP GPPG P +P E Sbjct: 483 LRGPRGFPGPPGPPGVPGLPGE 504 Score = 28.5 bits (62), Expect = 10.0 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%) Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129 + KG G+ RG K + G PG P G Sbjct: 779 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 838 Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178 PGP GPPGP PP + + + A R P GP GP A Sbjct: 839 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 884 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 100 RQSDKGVNGKKRSRGKA--KKLKFGLPGPPGPPGPQGPPGP 138 R G+NG K +G+ L FG+ G PGPPGP GPPGP Sbjct: 990 RPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGP 1030 Score = 42.7 bits (99), Expect = 5e-04 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 24/120 (20%) Query: 101 QSDKGVNGKKRSRGKAKKLKF---GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV 157 + D+G G+K RG+ F LPGPPGPPGP+G PG + G Sbjct: 1092 KGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPG---------------IPGPK 1136 Query: 158 RQRERAEPEPCTCGPAGPVAASL----APVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 + R +P P GP GP P G ++ P PGP P Sbjct: 1137 GESIRGQPGP--PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194 Score = 42.0 bits (97), Expect = 9e-04 Identities = 49/166 (29%), Positives = 58/166 (34%), Gaps = 36/166 (21%) Query: 32 GRHLGSASPM-----SAKSRPRC-GPFPRSHPPRAGGEA-EPSEANRPAGLAVFQEPTAE 84 G LG A + A +PR P P + PP AGG + E S + A+ Sbjct: 432 GSGLGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQ 491 Query: 85 RAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG-PIIP-P 142 D W VR G + G K K G PG PGPPG GPPG P +P P Sbjct: 492 TLPGSDSVSTWDGSVRTP-----GGRVKEGGLKGQK-GEPGVPGPPGRAGPPGSPCLPGP 545 Query: 143 EALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAG 188 L PC P GP +L V G Sbjct: 546 PGL---------------------PCPVSPLGPAGPALQTVPGPQG 570 Score = 42.0 bits (97), Expect = 9e-04 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 101 QSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIP 141 + KG G +RG++ G GPPGPPGP GPPGP +P Sbjct: 747 KGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 788 Score = 38.9 bits (89), Expect = 0.007 Identities = 14/16 (87%), Positives = 15/16 (93%) Query: 122 GLPGPPGPPGPQGPPG 137 GLPGPPGPPG +GPPG Sbjct: 715 GLPGPPGPPGREGPPG 730 Score = 38.9 bits (89), Expect = 0.007 Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGP 132 + D+G G+K GK + GLPGPPGPPGP Sbjct: 860 KGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGP 891 Score = 38.5 bits (88), Expect = 0.010 Identities = 52/201 (25%), Positives = 70/201 (34%), Gaps = 37/201 (18%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR 160 Q KG G + +G K G PG PGPP GPPGP++ + G+V Sbjct: 857 QGPKGDRGSRGEKGDPGKDGVGQPGLPGPP---GPPGPVV--------YVSEQDGSVLSV 905 Query: 161 ERAEPEPCTC---GPAGPVA--ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRV 215 E P GPAGP S + + + G + + L P + + Sbjct: 906 PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKG 965 Query: 216 EAAFLCRLRRDALVERRALHELGVYYLPDAEGAF----RRG-PGLNLTSGQYRAPVAGFY 270 E F G Y P +G R G PG+N G+ P G Sbjct: 966 EPGF--------------RGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEP--GDA 1009 Query: 271 ALAATLHVALGEPPRRGPPRP 291 +L + G P GPP P Sbjct: 1010 SLGFGMRGMPGPPGPPGPPGP 1030 Score = 37.7 bits (86), Expect = 0.016 Identities = 13/15 (86%), Positives = 14/15 (93%) Query: 123 LPGPPGPPGPQGPPG 137 +PGPPGPPGP GPPG Sbjct: 1185 VPGPPGPPGPPGPPG 1199 Score = 36.2 bits (82), Expect = 0.048 Identities = 32/108 (29%), Positives = 39/108 (36%), Gaps = 27/108 (25%) Query: 35 LGSASP-MSAKSRPRCGPFPRSH---PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD 90 LG A P + P+ P P P R G +P E +P T + Sbjct: 555 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGD-------TGPQGFPGT 607 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 P D G G K G ++ GPPGP GP GPPGP Sbjct: 608 PGDV----------GPKGDKGDPGVGER------GPPGPQGPPGPPGP 639 Score = 35.4 bits (80), Expect = 0.082 Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEPEPCTCGPAGPVAAS- 179 G PG PG PGP GPPG PP ++ L GA + + P GPAG S Sbjct: 709 GPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAP-----GPAGARGESG 763 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAF 219 LA AG P PGP P + A F Sbjct: 764 LAGAPGPAGPP------------GPPGPPGPPGPGLPAGF 791 Score = 35.0 bits (79), Expect = 0.11 Identities = 13/15 (86%), Positives = 13/15 (86%) Query: 124 PGPPGPPGPQGPPGP 138 PGPPG PG QGPPGP Sbjct: 1047 PGPPGLPGNQGPPGP 1061 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 13/34 (38%) Query: 122 GLPGPPGPP-------------GPQGPPGPIIPP 142 G PGPPGPP GP GPPGP PP Sbjct: 1165 GPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPP 1198 Score = 34.3 bits (77), Expect = 0.18 Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 34/114 (29%) Query: 122 GLPGPPGPPGPQGPPGPIIPP-------------EALLKEFQLLLKGAVRQRERAEPE-- 166 GLPG GPPGP+G G + PP EA +K + A ++ ER EP Sbjct: 1051 GLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGG 1110 Query: 167 -------PCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P GP GP P G + + G P PGP+ P Sbjct: 1111 GFFGSSLPGPPGPPGPRGYPGIP-----GPKGESIRGQ-------PGPPGPQGP 1152 Score = 33.1 bits (74), Expect = 0.41 Identities = 73/268 (27%), Positives = 95/268 (35%), Gaps = 55/268 (20%) Query: 36 GSASPMSAKSRPRCGPFPR-SHPPRAGGEAEPSEANRPAGLAVFQE---PTAERAHSVD- 90 G+ P A+ P + PP G P PAG + P A S D Sbjct: 751 GAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADG 810 Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQ 150 P+ L + D GV G ++G+ G+PG PG PG +G GP P Sbjct: 811 PQGPPGLPGLKGDPGVPGLPGAKGEVGA--DGVPGFPGLPGREGIAGPQGP--------- 859 Query: 151 LLLKGAVRQR-ERAEP------EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLA 203 KG R E+ +P +P GP GP PV + +D G VL++ Sbjct: 860 ---KGDRGSRGEKGDPGKDGVGQPGLPGPPGPP----GPVVYVSEQD-----GSVLSV-- 905 Query: 204 APLAPGPRAPRVEAAFLCRLRRDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYR 263 PGP A F + L G P +G +G G Sbjct: 906 ----PGPEGRPGFAGF-----PGPAGPKGNLGSKGERGSPGPKG--EKG-----EPGSIF 949 Query: 264 APVAGFYALAATLHVALGEPPRRGPPRP 291 +P G AL A GEP RGPP P Sbjct: 950 SPDGG--ALGPAQKGAKGEPGFRGPPGP 975 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPG G PG Sbjct: 668 GFPGPPGPPGVPGLPG 683 Score = 32.0 bits (71), Expect = 0.90 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGPPGPPGP G G Sbjct: 1187 GPPGPPGPPGPPGTMG 1202 Score = 29.3 bits (64), Expect = 5.8 Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 14/100 (14%) Query: 122 GLPGPPGPPGPQGPPG-------PIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174 G G PG PG G PG P P + K KG ER P P GP G Sbjct: 582 GRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGD----KGDPGVGERGPPGP--QGPPG 635 Query: 175 PVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAP 213 P S T + + G L L P PGP P Sbjct: 636 PPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGP 675 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 123 LPGPPGPPGPQGPPG-PIIPPE 143 L GP G PGP GPPG P +P E Sbjct: 663 LRGPRGFPGPPGPPGVPGLPGE 684 Score = 28.5 bits (62), Expect = 10.0 Identities = 29/109 (26%), Positives = 35/109 (32%), Gaps = 35/109 (32%) Query: 102 SDKGVNGKKRSRGK-------AKKLKFGLPGPP-------------------------GP 129 + KG G+ RG K + G PG P G Sbjct: 959 AQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGM 1018 Query: 130 PGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAA 178 PGP GPPGP PP + + + A R P GP GP A Sbjct: 1019 PGPPGPPGPPGPPGTPVYDSNVF---AESSRPGPPGLPGNQGPPGPKGA 1064 >gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo sapiens] Length = 1899 Score = 45.1 bits (105), Expect = 1e-04 Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 23/91 (25%) Query: 51 PFPRSHPPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 P P P AG EP RP G Q P ER G+ G Sbjct: 1780 PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-------------------GLPG 1820 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQ--GPPG 137 +K RG GLPGPPGP G GPPG Sbjct: 1821 EKGERGTGSSGPRGLPGPPGPQGESRTGPPG 1851 Score = 38.5 bits (88), Expect = 0.010 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPE 143 + ++G++G G + G PGP GPPGPQGP G IP E Sbjct: 1600 RGERGISGAIGPPGPRGDI--GPPGPQGPPGPQGPNGLSIPGE 1640 Score = 37.7 bits (86), Expect = 0.016 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 RQ KG G+ G+ G PG PGPPGP GPPG Sbjct: 1643 RQGMKGDAGEPGLPGRT-----GTPGLPGPPGPMGPPG 1675 Score = 36.2 bits (82), Expect = 0.048 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G G++ +G A + GLPG G PG GPPGP+ PP Sbjct: 1639 GEQGRQGMKGDAGEP--GLPGRTGTPGLPGPPGPMGPP 1674 Score = 32.3 bits (72), Expect = 0.69 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 11/94 (11%) Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV----RQRERAEPEP-CTCGPAGPVAAS 179 GPPGPPGP G PG P + + GA+ + + P P GP GP S Sbjct: 1583 GPPGPPGPAGGPGAKGP------RGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 1636 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 + G D + P PGP P Sbjct: 1637 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 1670 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 D+G GK + G G PGPPG PG G GP Sbjct: 1676 DRGFTGKDGAMGPR-----GPPGPPGSPGSPGVTGP 1706 Score = 31.2 bits (69), Expect = 1.5 Identities = 11/14 (78%), Positives = 11/14 (78%) Query: 124 PGPPGPPGPQGPPG 137 PGPPGPPGP G G Sbjct: 1777 PGPPGPPGPPGSAG 1790 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%) Query: 122 GLPGPPGPP---GPQGPPGP 138 G PGPPGPP G +G PGP Sbjct: 1778 GPPGPPGPPGSAGARGEPGP 1797 >gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo sapiens] Length = 3063 Score = 45.1 bits (105), Expect = 1e-04 Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 23/91 (25%) Query: 51 PFPRSHPPRAGGEAEPSEANRPA--GLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 P P P AG EP RP G Q P ER G+ G Sbjct: 2944 PGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGER-------------------GLPG 2984 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQ--GPPG 137 +K RG GLPGPPGP G GPPG Sbjct: 2985 EKGERGTGSSGPRGLPGPPGPQGESRTGPPG 3015 Score = 38.5 bits (88), Expect = 0.010 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPE 143 + ++G++G G + G PGP GPPGPQGP G IP E Sbjct: 2764 RGERGISGAIGPPGPRGDI--GPPGPQGPPGPQGPNGLSIPGE 2804 Score = 37.7 bits (86), Expect = 0.016 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 5/38 (13%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 RQ KG G+ G+ G PG PGPPGP GPPG Sbjct: 2807 RQGMKGDAGEPGLPGRT-----GTPGLPGPPGPMGPPG 2839 Score = 36.2 bits (82), Expect = 0.048 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 G G++ +G A + GLPG G PG GPPGP+ PP Sbjct: 2803 GEQGRQGMKGDAGEP--GLPGRTGTPGLPGPPGPMGPP 2838 Score = 32.3 bits (72), Expect = 0.69 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 11/94 (11%) Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAV----RQRERAEPEP-CTCGPAGPVAAS 179 GPPGPPGP G PG P + + GA+ + + P P GP GP S Sbjct: 2747 GPPGPPGPAGGPGAKGP------RGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLS 2800 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 + G D + P PGP P Sbjct: 2801 IPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGP 2834 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 D+G GK + G G PGPPG PG G GP Sbjct: 2840 DRGFTGKDGAMGPR-----GPPGPPGSPGSPGVTGP 2870 Score = 31.2 bits (69), Expect = 1.5 Identities = 11/14 (78%), Positives = 11/14 (78%) Query: 124 PGPPGPPGPQGPPG 137 PGPPGPPGP G G Sbjct: 2941 PGPPGPPGPPGSAG 2954 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 3/20 (15%) Query: 122 GLPGPPGPP---GPQGPPGP 138 G PGPPGPP G +G PGP Sbjct: 2942 GPPGPPGPPGSAGARGEPGP 2961 >gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] Length = 680 Score = 44.7 bits (104), Expect = 1e-04 Identities = 38/122 (31%), Positives = 45/122 (36%), Gaps = 31/122 (25%) Query: 34 HLGSASPMSAKSRPRC-GPF-PRSHPPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSV 89 H G A P A P GP P P G + +P P AG+A Sbjct: 435 HNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIAT------------ 482 Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKE 148 KG+NG G + G PG PGPPGP GPPG + PE +K Sbjct: 483 --------------KGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKA 528 Query: 149 FQ 150 Q Sbjct: 529 GQ 530 Score = 44.3 bits (103), Expect = 2e-04 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 11/103 (10%) Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTC 170 +S+G A + + G PGPPGP GP+G PGP PP + EP Sbjct: 49 KSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGK-----------PGYGSPGLQGEPGLP 97 Query: 171 GPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 GP GP A V G+ + + PGPR P Sbjct: 98 GPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGP 140 Score = 40.4 bits (93), Expect = 0.003 Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 12/92 (13%) Query: 47 PRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGV 106 PR P P S PP G P P GL P+A V + ++G Sbjct: 70 PRGHPGP-SGPPGKPGYGSPGLQGEP-GLPGPPGPSAVGKPGVPGLPG-----KPGERGP 122 Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G K G A GLPGP GPPGP G PGP Sbjct: 123 YGPKGDVGPA-----GLPGPRGPPGPPGIPGP 149 Score = 40.0 bits (92), Expect = 0.003 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVD-PRDAWMLFVRQSDKGVNGKKRSRGKA 116 P G P PAG++V +P + PR +KG G G+ Sbjct: 135 PGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGF------PGEKGAPGVPGMNGQK 188 Query: 117 KKLKFGLPGPPGP---PGPQGPPGPIIPP 142 ++ +G PG PG PGPQGP GP PP Sbjct: 189 GEMGYGAPGRPGERGLPGPQGPTGPSGPP 217 Score = 38.5 bits (88), Expect = 0.010 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Query: 105 GVNGKKRSRG---KAKKLKFGLPGPPGPPGPQGPPG 137 G+NG+K G + + GLPGP GP GP GPPG Sbjct: 183 GMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPG 218 Score = 35.4 bits (80), Expect = 0.082 Identities = 42/138 (30%), Positives = 46/138 (33%), Gaps = 37/138 (26%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP P + G P PAG A + ER G +GK Sbjct: 344 GPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERG----------------SPGSDGK 387 Query: 110 KRSRGK----AKKLKFGLPGPPGPP---GPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162 GK K GLPGP G P GP G PGP+ P A KG Sbjct: 388 PGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGA---------KGMPGHNGE 438 Query: 163 AEPE-----PCTCGPAGP 175 A P P T GP GP Sbjct: 439 AGPRGAPGIPGTRGPIGP 456 Score = 34.7 bits (78), Expect = 0.14 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPG---PPGPPGPQGPPG 137 ++ + GV G+ +G G PG P GPPGPQGPPG Sbjct: 221 KRGENGVPGQPGIKGDR-----GFPGEMGPIGPPGPQGPPG 256 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/41 (39%), Positives = 19/41 (46%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 Q + G+ G K GLPG PG GP GP G + P Sbjct: 91 QGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGP 131 Score = 31.6 bits (70), Expect = 1.2 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 G+ G K RG A GLPG PG G QGP G Sbjct: 302 GLPGLKGERGPA-----GLPGGPGAKGEQGPAG 329 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/34 (44%), Positives = 16/34 (47%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G G G K +G PG G PG GPPGP Sbjct: 69 GPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGP 102 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 GLPG PG GP GPPG Sbjct: 282 GLPGAPGIAGPPGPPG 297 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/18 (72%), Positives = 13/18 (72%) Query: 120 KFGLPGPPGPPGPQGPPG 137 K GL GPPG GPQGP G Sbjct: 333 KPGLTGPPGNMGPQGPKG 350 Score = 30.4 bits (67), Expect = 2.6 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 8/37 (21%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPG---PPGPQGPPGP 138 G G K +G A GLPG PG PPG GP GP Sbjct: 317 GGPGAKGEQGPA-----GLPGKPGLTGPPGNMGPQGP 348 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 +G G++ G K G PG PG PG +G PG Sbjct: 252 QGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPG 285 >gi|118498339 EMI domain containing 2 [Homo sapiens] Length = 439 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 9/92 (9%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110 P PR P G P P G A P+ P+ A +DK + Sbjct: 238 PGPRGLPGEMGRPGPPG----PPGPAGNPGPSPN-----SPQGALYSLQPPTDKDNGDSR 288 Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 + + G+PGP GPPGP GPPGP PP Sbjct: 289 LASAIVDTVLAGVPGPRGPPGPPGPPGPRGPP 320 Score = 43.5 bits (101), Expect = 3e-04 Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 14/82 (17%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKA 116 PP G PS N P G +P ++ + D R A + V GV G + Sbjct: 255 PPGPAGNPGPSP-NSPQGALYSLQPPTDKDNG-DSRLASAI-VDTVLAGVPGPR------ 305 Query: 117 KKLKFGLPGPPGPPGPQGPPGP 138 G PGPPGPPGP+GPPGP Sbjct: 306 -----GPPGPPGPPGPRGPPGP 322 Score = 36.6 bits (83), Expect = 0.037 Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 16/116 (13%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164 G G K RG+ G GP GPPG GPPGP P + + G Sbjct: 212 GPPGSKGDRGQT-----GEKGPAGPPGLLGPPGPRGLPGEMGRPGPPGPPGPA-----GN 261 Query: 165 PEPCTCGPAGPVAASLAPVSATAGEDD------DDVVGDVLALLAAPLAPGPRAPR 214 P P P G + + P G+ D V+ V P PGP PR Sbjct: 262 PGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVLAGVPGPRGPPGPPGPPGPR 317 Score = 36.2 bits (82), Expect = 0.048 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Query: 125 GPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175 GP GPPG GPPGP PP + +G ++ A P P GP GP Sbjct: 197 GPAGPPGQTGPPGPAGPPGSKGD------RGQTGEKGPAGP-PGLLGPPGP 240 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/17 (64%), Positives = 11/17 (64%) Query: 122 GLPGPPGPPGPQGPPGP 138 G GPPG GP GP GP Sbjct: 197 GPAGPPGQTGPPGPAGP 213 >gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] Length = 1499 Score = 43.9 bits (102), Expect = 2e-04 Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 27/144 (18%) Query: 101 QSDKGVNGKKRSRGKAKKLKF----GLPGPPGPPG------------PQGPPGPIIP--- 141 + DKG +G + RG+ F GLPGPPGP G P+GPPGP+ P Sbjct: 1127 RGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGK 1186 Query: 142 ---PEALLKEFQLLLKGAVRQRERAEP--EPCTCGPAGP---VAASLAPVSATAGEDDDD 193 P L ++G+V + P EP GP GP + A+L + E D Sbjct: 1187 EGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPD 1246 Query: 194 VVGDVLALLAAPLAPGPRAPRVEA 217 + + AAP P V A Sbjct: 1247 PLPEFTEDQAAPDDKNKTDPGVHA 1270 Score = 38.5 bits (88), Expect = 0.010 Identities = 72/248 (29%), Positives = 86/248 (34%), Gaps = 48/248 (19%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110 P P AG P A P EP E + + D G +G+ Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGL-----------RGDPGSHGRV 953 Query: 111 RSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQR-ERAEP 165 RG A G PG G PGP GPPGP Q + G QR ER P Sbjct: 954 GDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTG------QRGIVGMPGQRGERGMP 1007 Query: 166 EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA-PGPRAPRVEAAFLCRLR 224 GPAG + P AT + VG + P+ PGP P R Sbjct: 1008 G--LPGPAG-TPGKVGPTGATGDKGPPGPVGPPGS--NGPVGEPGPEGPAGNDG--TPGR 1060 Query: 225 RDALVERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAP-VAGFYALAATLHVALGEP 283 A+ ER + G LP ++GA PG T G AP AG G+P Sbjct: 1061 DGAVGERGDRGDPGPAGLPGSQGA----PG---TPGPVGAPGDAG----------QRGDP 1103 Query: 284 PRRGPPRP 291 RGP P Sbjct: 1104 GSRGPIGP 1111 Score = 37.4 bits (85), Expect = 0.021 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 15/108 (13%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G PM P FP + P GEA P+ A P G P +R + P Sbjct: 363 GKPGPMGPLGIPGSSGFPGN--PGMKGEAGPTGARGPEG------PQGQRGETGPPGPVG 414 Query: 96 M-----LFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G G S G + G GPPG PGPQG GP Sbjct: 415 SPGLPGAIGTDGTPGAKGPTGSPGTSGPP--GSAGPPGSPGPQGSTGP 460 Score = 37.4 bits (85), Expect = 0.021 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 101 QSDKGVNGKKRSRGKA-KKLKFGLPGPPGPPGPQGPPG 137 + D+G G+K + G A GLPGP GPPGP GP G Sbjct: 776 KGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTG 813 Score = 36.6 bits (83), Expect = 0.037 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137 G+ G++ +G F GLPGPPGPPG G PG Sbjct: 660 GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPG 693 Score = 35.8 bits (81), Expect = 0.062 Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 15/102 (14%) Query: 122 GLPGPPGPPGPQGPPGPIIP--------PEALLKEFQLLLKGAVRQRERAEPEPCTCGPA 173 G PGP GPPG QGP G P P+ + E V + A P Sbjct: 129 GRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGE------PGVPGQPGAPGPPGHPSHP 182 Query: 174 GPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPR 214 GP S + AG D+ +G + L+ + P GPR P+ Sbjct: 183 GPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQ 224 Score = 35.8 bits (81), Expect = 0.062 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 13/61 (21%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181 G GP G PGP G GPI PP + +P T GP GPV A Sbjct: 477 GEAGPKGEPGPHGIQGPIGPP-------------GEEGKRGPRGDPGTVGPPGPVGERGA 523 Query: 182 P 182 P Sbjct: 524 P 524 Score = 35.4 bits (80), Expect = 0.082 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 4/92 (4%) Query: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKK 110 P P G P E +P V +P A + PR + + G+ G Sbjct: 671 PGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGA--VGPLGPRGERGNPGERGEPGITGLP 728 Query: 111 RSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 +G A G GP G PGP G PG PP Sbjct: 729 GEKGMAGG--HGPDGPKGSPGPSGTPGDTGPP 758 Score = 35.0 bits (79), Expect = 0.11 Identities = 46/165 (27%), Positives = 54/165 (32%), Gaps = 35/165 (21%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVF---QEPTAERAHSVDPR 92 G A P K P GP PP + G N P G F Q P + +P Sbjct: 807 GPAGPTGEKGEP--GPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPG 864 Query: 93 DAWMLFVRQSDKGVNGKKRSRGK----------AKKLKFGLPGPP------------GPP 130 + ++ D G G + G K G GPP GPP Sbjct: 865 EPG----QKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPP 920 Query: 131 GPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175 GP G PGP P KE L+G R GPAGP Sbjct: 921 GPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDR----GPAGP 961 Score = 33.9 bits (76), Expect = 0.24 Identities = 44/156 (28%), Positives = 55/156 (35%), Gaps = 30/156 (19%) Query: 36 GSASPMSAKSRPR----CGPF----PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAH 87 G A P P GP P P + G + EP P + P A R Sbjct: 231 GGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGA-RGF 289 Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRG----KAKKLKFGLPGPP---GPPGPQGPPGPII 140 P G+ G K RG + K + G PG GP GP G GP+ Sbjct: 290 PGAP-------------GLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLG 336 Query: 141 PPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPV 176 P + +L +GA QR A P GP GP+ Sbjct: 337 PRGMPGERGRLGPQGAPGQR-GAHGMPGKPGPMGPL 371 Score = 33.1 bits (74), Expect = 0.41 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 10/54 (18%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP 175 G GPPGP G QG PGP PP +G + +P GP GP Sbjct: 666 GEQGPPGPTGFQGLPGPPGPPG----------EGGKPGDQGVPGDPGAVGPLGP 709 Score = 32.0 bits (71), Expect = 0.90 Identities = 37/120 (30%), Positives = 43/120 (35%), Gaps = 34/120 (28%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQG---PPGPIIPPEALLKEFQLLLKGAVRQR 160 KG +G G+A G+PG G PG G P GP+ PP A + Sbjct: 620 KGSSGDPGKPGEAGNA--GVPGQRGAPGKDGEVGPSGPVGPPGL-----------AGERG 666 Query: 161 ERAEPEPC----TCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216 E+ P P GP GP P D V GD P A GP PR E Sbjct: 667 EQGPPGPTGFQGLPGPPGPPGEGGKP-------GDQGVPGD-------PGAVGPLGPRGE 712 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 +G G +RG L G PGP GP G +G PGP Sbjct: 788 EGTAGNDGARGLPGPL--GPPGPAGPTGEKGEPGP 820 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G G + +G A G GPPG PG GP GPI Sbjct: 221 RGPQGLQGQQGGA-----GPTGPPGEPGDPGPMGPI 251 Score = 30.4 bits (67), Expect = 2.6 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLA 181 G+PG PGP GP G PG P + + GA R E + + GP GPV + Sbjct: 360 GMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGA-RGPEGPQGQRGETGPPGPVGSPGL 418 Query: 182 P 182 P Sbjct: 419 P 419 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142 +G+ G++ G G PG PG PGP GP GP PP Sbjct: 224 QGLQGQQGGAGPT-----GPPGEPGDPGPMGPIGSRGPEGPP 260 Score = 30.0 bits (66), Expect = 3.4 Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 8/83 (9%) Query: 57 PPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRG 114 P R G E + P AGL Q P DA ++ D G G G Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAG----QRGDPGSRGPIGPPG 1113 Query: 115 KAKKLKFGLPGPPGPPGPQGPPG 137 +A K GLPGP GP G +G G Sbjct: 1114 RAGKR--GLPGPQGPRGDKGDHG 1134 Score = 29.6 bits (65), Expect = 4.5 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 G GK+ RG G GPPGP G +G PG Sbjct: 498 GEEGKRGPRGDP-----GTVGPPGPVGERGAPG 525 >gi|5729785 complement component 1, q subcomponent-like 1 [Homo sapiens] Length = 258 Score = 43.9 bits (102), Expect = 2e-04 Identities = 17/28 (60%), Positives = 20/28 (71%) Query: 115 KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 + K + G PGPPGPPG GPPGP+ PP Sbjct: 69 QGKPGRTGKPGPPGPPGDPGPPGPVGPP 96 Score = 36.2 bits (82), Expect = 0.048 Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 31/101 (30%) Query: 41 MSAKSRPRCGPFPRSHPPRA----GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWM 96 M R C P+P P GG+A ++ P + Q P Sbjct: 24 MLGTCRMVCDPYPARGPGAGARTDGGDALSEQSGAPPPSTLVQGP--------------- 68 Query: 97 LFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 Q G GK G PG PGPPGP GPPG Sbjct: 69 ----QGKPGRTGKPGPPGP--------PGDPGPPGPVGPPG 97 >gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] Length = 1604 Score = 43.9 bits (102), Expect = 2e-04 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 16/113 (14%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163 KGV G+ G+ + G PG PG PG QG PGP PP + A Sbjct: 776 KGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPP-------------GPTGEKGA 822 Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216 + P G GPV A VS G D L P GPR + E Sbjct: 823 QGSPGVKGATGPVGPPGASVSGPPGRDGQQ---GQTGLRGTPGEKGPRGEKGE 872 Score = 39.7 bits (91), Expect = 0.004 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGP---PGPPGPQGPPG 137 RQ GV G ++G+ + G+ G PGPPGPQGPPG Sbjct: 1504 RQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPG 1544 Score = 38.9 bits (89), Expect = 0.007 Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 29/103 (28%) Query: 36 GSASPMSAKSRPRC-GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94 GS A+ P GP R PP G P PAG++ Sbjct: 1267 GSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVG--------------- 1311 Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 + D+G G+ RG A GLPG PGPPG GPPG Sbjct: 1312 -----LKGDRGATGE---RGLA-----GLPGQPGPPGHPGPPG 1341 Score = 36.2 bits (82), Expect = 0.048 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 Q++KG G + G G PGPPGPPG QGP G Sbjct: 1182 QAEKGSEGIRGPSGLP-----GSPGPPGPPGIQGPAG 1213 Score = 35.8 bits (81), Expect = 0.062 Identities = 45/154 (29%), Positives = 56/154 (36%), Gaps = 18/154 (11%) Query: 58 PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAK 117 P + G P PAGL + DP A G+ G +GK Sbjct: 1197 PGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPA-------GPPGLMGPPGFKGKT- 1248 Query: 118 KLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGPVA 177 G PG PGP G G PG PP + + GA+ + R P P GP GP Sbjct: 1249 ----GHPGLPGPKGDCGKPG---PPGSTGRPGAEGEPGAMGPQGRPGP-PGHVGPPGPPG 1300 Query: 178 -ASLAPVSATAGEDDDDVVGDVLALLAAPLAPGP 210 A +SA + D G+ L P PGP Sbjct: 1301 QPGPAGISAVGLKGDRGATGE-RGLAGLPGQPGP 1333 Score = 35.4 bits (80), Expect = 0.082 Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 9/101 (8%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPE-----PCTCGPAG-P 175 G PGPPGP GP G PG + P + + L G + P P GP G P Sbjct: 1042 GSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLP 1101 Query: 176 VAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVE 216 + +AGE + L P PGP PR E Sbjct: 1102 GIKGERGYTGSAGEKGEPGPPGSEGL---PGPPGPAGPRGE 1139 Score = 35.4 bits (80), Expect = 0.082 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 101 QSDKGVNGKKRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 + ++G G +G+ GLPGPPGP GP+G GP Sbjct: 1104 KGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGP 1142 Score = 34.3 bits (77), Expect = 0.18 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 12/33 (36%) Query: 122 GLPGPPGPPGPQG------------PPGPIIPP 142 GLPGPPG PG +G PPGPI PP Sbjct: 1021 GLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPP 1053 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 11/44 (25%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPP------GPQGPPGP 138 Q + G G + +G+ G PGPPGPP G GPPGP Sbjct: 1143 QGNSGEKGDQGFQGQP-----GFPGPPGPPGFPGKVGSPGPPGP 1181 Score = 33.9 bits (76), Expect = 0.24 Identities = 12/16 (75%), Positives = 13/16 (81%) Query: 122 GLPGPPGPPGPQGPPG 137 G+PG PGPPGP G PG Sbjct: 1558 GIPGIPGPPGPMGQPG 1573 Score = 33.5 bits (75), Expect = 0.31 Identities = 14/24 (58%), Positives = 15/24 (62%) Query: 115 KAKKLKFGLPGPPGPPGPQGPPGP 138 K +K FG GP G PGP GP GP Sbjct: 598 KGEKGNFGEAGPAGSPGPPGPVGP 621 Score = 33.5 bits (75), Expect = 0.31 Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 20/78 (25%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAE 164 G G K +G + G PG PG PG QGPPG LKG + E Sbjct: 742 GQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPG---------------LKGV-----QGE 781 Query: 165 PEPCTCGPAGPVAASLAP 182 P P G GP AP Sbjct: 782 PGPPGRGVQGPQGEPGAP 799 Score = 33.1 bits (74), Expect = 0.41 Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVR------ 158 G+ G+K + G+A G PGPPGP GP G G P L G VR Sbjct: 596 GLKGEKGNFGEAGPA--GSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPG 653 Query: 159 -QRERAEPEPCTCGPAG 174 E+ EP P G G Sbjct: 654 PSGEKGEPGPPGFGLPG 670 Score = 33.1 bits (74), Expect = 0.41 Identities = 12/15 (80%), Positives = 12/15 (80%) Query: 124 PGPPGPPGPQGPPGP 138 PGP GPPG GPPGP Sbjct: 903 PGPQGPPGIPGPPGP 917 Score = 33.1 bits (74), Expect = 0.41 Identities = 12/16 (75%), Positives = 13/16 (81%) Query: 122 GLPGPPGPPGPQGPPG 137 G+ G PGPPGP GPPG Sbjct: 1039 GMRGSPGPPGPIGPPG 1054 Score = 33.1 bits (74), Expect = 0.41 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 104 KGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPP 142 +G G + + G+ F G PG PGPPGP G PG + P Sbjct: 1137 RGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSP 1176 Score = 33.1 bits (74), Expect = 0.41 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPP---GPQGPPGP 138 + D G G+K G+ K + G+PG PG GP GPPGP Sbjct: 1367 KGDPGAAGQKGQAGE--KGRAGMPGGPGKSGSMGPVGPPGP 1405 Score = 32.7 bits (73), Expect = 0.53 Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 31/108 (28%) Query: 105 GVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163 G GK RG K +K G PG PG PG G PG L G Sbjct: 670 GKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPG---------------LSG-------- 706 Query: 164 EPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPR 211 EP GPAGP +A + G V + P PGP+ Sbjct: 707 --EPGVQGPAGPKGEKGDGCTAC-----PSLQGTVTDMAGRPGQPGPK 747 Score = 32.3 bits (72), Expect = 0.69 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 20/58 (34%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQ--------------------GPPGPIIPP 142 G G+K G + GLPGPPGP GP GPPGP+ P Sbjct: 1515 GTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQP 1572 Score = 32.0 bits (71), Expect = 0.90 Identities = 13/20 (65%), Positives = 14/20 (70%) Query: 122 GLPGPPGPPGPQGPPGPIIP 141 GL G PGPPG GPPG +P Sbjct: 444 GLAGEPGPPGLPGPPGIGLP 463 Score = 32.0 bits (71), Expect = 0.90 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 8/89 (8%) Query: 51 PFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNG 108 P P HP G A + P G F P + DP A + +KG G Sbjct: 1331 PGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKG---DPGAAGQKG-QAGEKGRAG 1386 Query: 109 KKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 GK+ + G GPPGP G +G PG Sbjct: 1387 MPGGPGKSGSM--GPVGPPGPAGERGHPG 1413 Score = 31.6 bits (70), Expect = 1.2 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPG PGP GPPG Sbjct: 904 GPQGPPGIPGPPGPPG 919 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 +G+ G+ G GLPG PG PG GPPGP Sbjct: 443 EGLAGEPGPPGLPGPPGIGLPGTPGDPG--GPPGP 475 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/16 (75%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G PG PGPPGP G PG Sbjct: 907 GPPGIPGPPGPPGVPG 922 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 3/19 (15%) Query: 122 GLPGPPGPPGP---QGPPG 137 G+PGPPGPPG QG PG Sbjct: 910 GIPGPPGPPGVPGLQGVPG 928 Score = 30.4 bits (67), Expect = 2.6 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 9/53 (16%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAG 174 G+PGPPGP G G G P + GA+ ++ P GP G Sbjct: 1561 GIPGPPGPMGQPGKAGHCNPSDCF---------GAMPMEQQYPPMKTMKGPFG 1604 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 15/34 (44%) Query: 120 KFGLPGPPGP---------------PGPQGPPGP 138 K G PGPPGP PG GPPGP Sbjct: 1172 KVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGP 1205 Score = 29.6 bits (65), Expect = 4.5 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPG----------PPGPQGPPGPIIPP 142 + +KG G+ + + G+PG PG P GP G PGP PP Sbjct: 867 RGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPP 918 Score = 28.5 bits (62), Expect = 10.0 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 39/86 (45%) Query: 102 SDKGVNGKKRSRGKAKKLKFGLPGPP------------------GPPGPQGPPGPIIPPE 143 S G +G S G FGLPG P GP G GPPGP+ P Sbjct: 570 SSTGASGDVGSPG------FGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAG 623 Query: 144 ALLKEFQLLLKGAVRQRERAEP-EPC 168 +KGA + EP EPC Sbjct: 624 ---------IKGA-----KGEPCEPC 635 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 43.5 bits (101), Expect = 3e-04 Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 101 QSDKGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQ 159 + KG G + RG A + G+PG PG PGP GPPGP PP L G + Sbjct: 111 EGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEK 170 Query: 160 RERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214 P GP+GP P A + G+ P A GP PR Sbjct: 171 STGGISVPGPMGPSGPRGLP-GPPGAPGPQGFQGPPGEP----GEPGASGPMGPR 220 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 17/89 (19%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK- 115 PP + GE PS A+ PAG PR G+NG G Sbjct: 1122 PPGSPGEQGPSGASGPAG----------------PRGPPGSAGAPGKDGLNGLPGPIGPP 1165 Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144 + + G GP GPPGP GPPGP PP A Sbjct: 1166 GPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194 Score = 43.1 bits (100), Expect = 4e-04 Identities = 37/111 (33%), Positives = 42/111 (37%), Gaps = 10/111 (9%) Query: 36 GSASPMSAKSRPR-------CGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHS 88 G A P A P GP P A G+ S + PAG + +R Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEP 805 Query: 89 VDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 P A +D G G K G A G GPPGP GP GPPGPI Sbjct: 806 GPPGPAGFAGPPGAD-GQPGAKGEPGDAGAK--GDAGPPGPAGPAGPPGPI 853 Score = 40.4 bits (93), Expect = 0.003 Identities = 35/106 (33%), Positives = 43/106 (40%), Gaps = 17/106 (16%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAG--GEAEPSEANRPAGLAVFQEPTAERAHSVDPRD 93 G A P A P P P ++G GE P+ P G + P + PR Sbjct: 1040 GPAGPPGAPGAPGA-PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG----PR- 1093 Query: 94 AWMLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGP 138 DKG G++ RG K + GL GPPGPPG G GP Sbjct: 1094 --------GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGP 1131 Score = 40.0 bits (92), Expect = 0.003 Identities = 50/173 (28%), Positives = 65/173 (37%), Gaps = 21/173 (12%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGK- 115 PP GE A+ PAG P R L ++ ++G G G+ Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ----RGVVGLPGQRGERGFPGLPGPSGEP 982 Query: 116 AKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQ--RERAEPEPCTCGPA 173 K+ G G GPPGP GPPG PP +E +G+ + A+ + GPA Sbjct: 983 GKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA 1042 Query: 174 GPVAASLA-----PVSATAGEDDDDVVGDVLALLAAPLAP-------GPRAPR 214 GP A A PV D G A A P+ P GP+ PR Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGP--AGPAGPVGPVGARGPAGPQGPR 1093 Score = 38.9 bits (89), Expect = 0.007 Identities = 38/107 (35%), Positives = 43/107 (40%), Gaps = 15/107 (14%) Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERA 163 G G++ +G A F GLPGP GPPG G PG P L +G ER Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARG-----ERG 680 Query: 164 EP-EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 P E GP GP P A +D GD AP APG Sbjct: 681 FPGERGVQGPPGPA----GPRGANGAPGNDGAKGDA----GAPGAPG 719 Score = 38.5 bits (88), Expect = 0.010 Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 29/102 (28%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 GSA P A P G R PP G A P PAG Sbjct: 866 GSAGPPGATGFP--GAAGRVGPPGPSGNAGPPGPPGPAG--------------------- 902 Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 ++ KG G+ G+ ++ G PGPPGP G +G PG Sbjct: 903 ----KEGGKGPRGETGPAGRPGEV--GPPGPPGPAGEKGSPG 938 Score = 37.0 bits (84), Expect = 0.028 Identities = 33/106 (31%), Positives = 36/106 (33%), Gaps = 31/106 (29%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP--------------EP 167 G GPPGP GP GPPG GAV + A P EP Sbjct: 329 GAAGPPGPTGPAGPPG---------------FPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373 Query: 168 CTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 GPAG AA A G+ + AP PG R P Sbjct: 374 GPPGPAG--AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417 Score = 37.0 bits (84), Expect = 0.028 Identities = 33/93 (35%), Positives = 35/93 (37%), Gaps = 32/93 (34%) Query: 54 RSHPPRAGGEAEPSEANRP--AGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKR 111 R P AG + P EA RP AGL P A KG+ G Sbjct: 511 RGSPGPAGPKGSPGEAGRPGEAGL-----PGA--------------------KGLTGSPG 545 Query: 112 SRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEA 144 S G G GPPGP G G PGP PP A Sbjct: 546 SPGPD-----GKTGPPGPAGQDGRPGPPGPPGA 573 Score = 35.8 bits (81), Expect = 0.062 Identities = 40/132 (30%), Positives = 47/132 (35%), Gaps = 48/132 (36%) Query: 105 GVNGKKRSRGKAKKL-KFGLPGPPGPPGP---------QGPPGPIIPPEALLKEFQLLLK 154 G G K + G+ K + G+PGPPG GP QGPPGP P Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP------------- 627 Query: 155 GAVRQRERAEPEPCTC-------GPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA 207 ER E P GPAGP + P + V GD+ A Sbjct: 628 ----AGERGEQGPAGSPGFQGLPGPAGPPGEAGKP-------GEQGVPGDL-------GA 669 Query: 208 PGPRAPRVEAAF 219 PGP R E F Sbjct: 670 PGPSGARGERGF 681 Score = 35.8 bits (81), Expect = 0.062 Identities = 50/184 (27%), Positives = 56/184 (30%), Gaps = 27/184 (14%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G A P A+ P G PP G A P A+ G + + P A Sbjct: 788 GPAGPTGARGAP--GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845 Query: 96 ML-----FVRQSDKGVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPGPIIPPEALLKEF 149 G G + S G F G G GPPGP G GP PP KE Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE- 904 Query: 150 QLLLKGAVRQRERAEP--EPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLA 207 G R P P GP GP P D G AP Sbjct: 905 -----GGKGPRGETGPAGRPGEVGPPGPP----GPAGEKGSPGADGPAG-------APGT 948 Query: 208 PGPR 211 PGP+ Sbjct: 949 PGPQ 952 Score = 33.5 bits (75), Expect = 0.31 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 18/95 (18%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCTCGPAGP--VAAS 179 G+ GP G GP+GP GP PP + + + P GP GP + + Sbjct: 109 GVEGPKGDTGPRGPRGPAGPPG----------RDGIPGQPGLPGPPGPPGPPGPPGLGGN 158 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214 AP + G D+ G ++ P GP PR Sbjct: 159 FAP-QLSYGYDEKSTGG-----ISVPGPMGPSGPR 187 Score = 33.5 bits (75), Expect = 0.31 Identities = 34/108 (31%), Positives = 36/108 (33%), Gaps = 25/108 (23%) Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89 TGG + PM S PR P P P G + P E P P R Sbjct: 172 TGG--ISVPGPMGP-SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASG----PMGPRGPPG 224 Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 P G NG GK G PG GPPGPQG G Sbjct: 225 PP-------------GKNGDDGEAGKP-----GRPGERGPPGPQGARG 254 Score = 33.5 bits (75), Expect = 0.31 Identities = 34/111 (30%), Positives = 40/111 (36%), Gaps = 18/111 (16%) Query: 36 GSASPMSAKSRPRC-GPFPRSHP---PRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDP 91 GS P + P GP + P P A G+ AN G+A R S Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP- 420 Query: 92 RDAWMLFVRQSDKGVNGKKRSRGK----AKKLKFGLPGPPGPPGPQGPPGP 138 Q G G K + G+ K G G PGP G QGPPGP Sbjct: 421 ---------QGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462 Score = 32.7 bits (73), Expect = 0.53 Identities = 43/148 (29%), Positives = 48/148 (32%), Gaps = 23/148 (15%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 GS AK P GP PP GE A G P ER Sbjct: 440 GSKGDTGAKGEP--GPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS----- 492 Query: 96 MLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI-IPPEALLKEFQLLLK 154 + G +G +G A G G PGP GP+G PG P EA L K Sbjct: 493 -----RGFPGADGVAGPKGPA-----GERGSPGPAGPKGSPGEAGRPGEAGLPG----AK 538 Query: 155 GAVRQRERAEPEPCTCGPAGPVAASLAP 182 G P+ T GP GP P Sbjct: 539 GLTGSPGSPGPDGKT-GPPGPAGQDGRP 565 Score = 32.3 bits (72), Expect = 0.69 Identities = 12/17 (70%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PG GP GP+GPPGP Sbjct: 209 GEPGASGPMGPRGPPGP 225 Score = 32.0 bits (71), Expect = 0.90 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP-EPCTCGPAGPVAASL 180 G PG PG PG GP GP PP K E +P P GP GP A Sbjct: 203 GPPGEPGEPGASGPMGPRGPPGPPGKNGD--------DGEAGKPGRPGERGPPGPQGARG 254 Query: 181 APVSA 185 P +A Sbjct: 255 LPGTA 259 Score = 32.0 bits (71), Expect = 0.90 Identities = 31/97 (31%), Positives = 34/97 (35%), Gaps = 33/97 (34%) Query: 101 QSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGP---------------PGPIIPPEAL 145 Q G+ G RG A GLPGP G G GP GPI PP Sbjct: 721 QGAPGLQGMPGERGAA-----GLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP- 774 Query: 146 LKEFQLLLKGAVRQRERAEPEPCTCGPAGPVAASLAP 182 GA + + P GPAGP A AP Sbjct: 775 --------AGAPGDKGESGPS----GPAGPTGARGAP 799 Score = 31.6 bits (70), Expect = 1.2 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Query: 50 GPF-PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVR--QSDKGV 106 GP PR P G + EA +P P + A + P A + ++ + G+ Sbjct: 215 GPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGL-PGTAGLPGMKGHRGFSGL 273 Query: 107 NGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 +G K G A G G PG PG G PG + P Sbjct: 274 DGAKGDAGPA-----GPKGEPGSPGENGAPGQMGP 303 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/21 (61%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G PG PG GP GP GP PP Sbjct: 407 GAPGFPGARGPSGPQGPGGPP 427 >gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo sapiens] Length = 1818 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161 GV G K G G PGPPGP G P GPPG PP A E + KGA + Sbjct: 1342 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1395 Query: 162 RAEPEPCTCGPAGP 175 AE P GP GP Sbjct: 1396 GAEGPPGKTGPVGP 1409 Score = 40.0 bits (92), Expect = 0.003 Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94 G PM P GP P A G + P G+ EP E + P +A Sbjct: 1225 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1281 Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154 GV G K RG+ K + G PG GPPG +GPPG P Sbjct: 1282 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1316 Query: 155 GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 + P P GP G P A V GED D P PG Sbjct: 1317 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1357 Query: 210 PRAPRVEA 217 P P EA Sbjct: 1358 PPGPSGEA 1365 Score = 39.3 bits (90), Expect = 0.006 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93 G+A P+ RP P+ P AG + P E PAG Q P + Sbjct: 1078 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1133 Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153 DKG G+ +G G G GPPGP G GP+ P + + Sbjct: 1134 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1184 Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 +G + E P P L + GE ++ GDV + P PGPR P Sbjct: 1185 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1241 Query: 214 R 214 + Sbjct: 1242 Q 1242 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111 P + G + + E N P G Q P A PR +F ++ D+G G Sbjct: 1146 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1204 Query: 112 SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138 G K + G GPPGPPGP+GP GP Sbjct: 1205 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1244 Score = 37.7 bits (86), Expect = 0.016 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G P + P GP P A G+ P P GL + + P Sbjct: 1414 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1471 Query: 96 MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138 ++ Q +KG G ++G K G+PGP GP PGP G PGP Sbjct: 1472 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1520 Score = 37.4 bits (85), Expect = 0.021 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146 +G G K S G A + G G PGPPG GPPG +I P +L Sbjct: 1521 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1561 Score = 36.6 bits (83), Expect = 0.037 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 P P AGG+ EP + G+ + R P + Q G G+K Sbjct: 1169 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1223 Query: 113 RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142 G + G PGPPGP GPQGP GP PP Sbjct: 1224 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1254 Score = 35.4 bits (80), Expect = 0.082 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G GK +G + G PGPPG GPQGP GP+ Sbjct: 906 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 939 Score = 35.4 bits (80), Expect = 0.082 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%) Query: 36 GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71 G+A P AK P + P P P G EP A + Sbjct: 1300 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1359 Query: 72 -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120 P+G A P +R P A RQ +KG G+ + G K Sbjct: 1360 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415 Query: 121 ------FGLPGP------PGPPGPQGPPGPIIPP 142 G+PGP PG G GPPGP+ PP Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1449 Score = 35.0 bits (79), Expect = 0.11 Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%) Query: 54 RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105 ++ PP GG P G P ER H P + + D G Sbjct: 971 KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1024 Query: 106 VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155 G G A F GLPG G PG PQGPPGP+ P + G Sbjct: 1025 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1081 Query: 156 AVRQRERAEPEPCTCGPAGPVAASLAP 182 + R P+ GP GP AP Sbjct: 1082 PIGLPGRPGPQ----GPPGPAGEKGAP 1104 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 R G G ++G++ G PGP GP G QGPPGP P Sbjct: 551 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 588 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/17 (76%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PGP G PGPQGP GP Sbjct: 706 GNPGPQGLPGPQGPIGP 722 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 GV+G +G G G PGPPG QG PGP Sbjct: 682 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 710 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 D G +G+ +GK G+PG PG PG QGP G Sbjct: 836 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 865 Score = 32.0 bits (71), Expect = 0.90 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%) Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142 G G+K +G+ ++ G+ PGP GP G GPP GP PP Sbjct: 432 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 477 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G NG+K +RG A G PGP G +GP GP Sbjct: 874 GANGEKGARGVA--------GKPGPRGQRGPTGP 899 Score = 31.2 bits (69), Expect = 1.5 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP PP G P P G P E+ P A + G +G Sbjct: 694 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 743 Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 GK + + G GPPGP GP G PGP Sbjct: 744 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 773 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/17 (70%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G GP G PGP+GPPGP Sbjct: 934 GPQGPVGFPGPKGPPGP 950 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142 P ML R G G S +A+ + + L GPPGP G G PGP+ P Sbjct: 501 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 558 Score = 30.4 bits (67), Expect = 2.6 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G PM RP GP A GE+ P G+ PT + P Sbjct: 541 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 595 Query: 96 MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 +G+ G+ ++G + GLPG G G +GP GP PP Sbjct: 596 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 639 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/21 (61%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G G PGP G GP GPI PP Sbjct: 703 GQQGNPGPQGLPGPQGPIGPP 723 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 940 GFPGPKGPPGPPGKDG 955 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G+ GPPG GP GPPG Sbjct: 463 GIMGPPGLQGPTGPPG 478 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPG PG +GPPG Sbjct: 472 GPTGPPGDPGDRGPPG 487 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137 G G++ +G + F G GPPGPPG G PG Sbjct: 925 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 958 Score = 29.6 bits (65), Expect = 4.5 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171 G PG PG PG G PGP P L+ F+ KG + A+ + G Sbjct: 484 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 541 Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214 P GP+ + PV GD PGP+ PR Sbjct: 542 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 576 Score = 29.6 bits (65), Expect = 4.5 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%) Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87 GG A S P+ GP PP G +P + RP G + EP A+ Sbjct: 556 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 612 Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 D DKG G++ +G PGPPG G +G G I P Sbjct: 613 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 653 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/17 (64%), Positives = 11/17 (64%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PG PG G GPPGP Sbjct: 673 GAPGQPGMAGVDGPPGP 689 Score = 28.9 bits (63), Expect = 7.6 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162 KG G K RG+ ++ G GP GP G GP G P ++ +L + G R Sbjct: 801 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 860 Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189 P+ T P P A AG+ Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGK 887 Score = 28.9 bits (63), Expect = 7.6 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%) Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89 TG R A + K P+ G PP GE P P G + P Sbjct: 897 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 955 Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 P G G+ +GK GPPGP G GP GP Sbjct: 956 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 986 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%) Query: 105 GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137 G G++ S G A + GLPG PPGP G +G PG Sbjct: 1069 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1105 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/17 (64%), Positives = 12/17 (70%) Query: 122 GLPGPPGPPGPQGPPGP 138 GLPGP GP G +G GP Sbjct: 1516 GLPGPQGPKGNKGSTGP 1532 >gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo sapiens] Length = 1767 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161 GV G K G G PGPPGP G P GPPG PP A E + KGA + Sbjct: 1291 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1344 Query: 162 RAEPEPCTCGPAGP 175 AE P GP GP Sbjct: 1345 GAEGPPGKTGPVGP 1358 Score = 40.0 bits (92), Expect = 0.003 Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94 G PM P GP P A G + P G+ EP E + P +A Sbjct: 1174 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1230 Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154 GV G K RG+ K + G PG GPPG +GPPG P Sbjct: 1231 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1265 Query: 155 GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 + P P GP G P A V GED D P PG Sbjct: 1266 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1306 Query: 210 PRAPRVEA 217 P P EA Sbjct: 1307 PPGPSGEA 1314 Score = 39.3 bits (90), Expect = 0.006 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93 G+A P+ RP P+ P AG + P E PAG Q P + Sbjct: 1027 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1082 Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153 DKG G+ +G G G GPPGP G GP+ P + + Sbjct: 1083 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1133 Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 +G + E P P L + GE ++ GDV + P PGPR P Sbjct: 1134 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1190 Query: 214 R 214 + Sbjct: 1191 Q 1191 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111 P + G + + E N P G Q P A PR +F ++ D+G G Sbjct: 1095 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1153 Query: 112 SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138 G K + G GPPGPPGP+GP GP Sbjct: 1154 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1193 Score = 37.7 bits (86), Expect = 0.016 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G P + P GP P A G+ P P GL + + P Sbjct: 1363 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1420 Query: 96 MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138 ++ Q +KG G ++G K G+PGP GP PGP G PGP Sbjct: 1421 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1469 Score = 37.4 bits (85), Expect = 0.021 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146 +G G K S G A + G G PGPPG GPPG +I P +L Sbjct: 1470 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1510 Score = 36.6 bits (83), Expect = 0.037 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 P P AGG+ EP + G+ + R P + Q G G+K Sbjct: 1118 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1172 Query: 113 RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142 G + G PGPPGP GPQGP GP PP Sbjct: 1173 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1203 Score = 35.4 bits (80), Expect = 0.082 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G GK +G + G PGPPG GPQGP GP+ Sbjct: 855 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 888 Score = 35.4 bits (80), Expect = 0.082 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%) Query: 36 GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71 G+A P AK P + P P P G EP A + Sbjct: 1249 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1308 Query: 72 -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120 P+G A P +R P A RQ +KG G+ + G K Sbjct: 1309 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364 Query: 121 ------FGLPGP------PGPPGPQGPPGPIIPP 142 G+PGP PG G GPPGP+ PP Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1398 Score = 35.0 bits (79), Expect = 0.11 Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%) Query: 54 RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105 ++ PP GG P G P ER H P + + D G Sbjct: 920 KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 973 Query: 106 VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155 G G A F GLPG G PG PQGPPGP+ P + G Sbjct: 974 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1030 Query: 156 AVRQRERAEPEPCTCGPAGPVAASLAP 182 + R P+ GP GP AP Sbjct: 1031 PIGLPGRPGPQ----GPPGPAGEKGAP 1053 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 R G G ++G++ G PGP GP G QGPPGP P Sbjct: 500 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 537 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/17 (76%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PGP G PGPQGP GP Sbjct: 655 GNPGPQGLPGPQGPIGP 671 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 GV+G +G G G PGPPG QG PGP Sbjct: 631 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 659 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 D G +G+ +GK G+PG PG PG QGP G Sbjct: 785 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 814 Score = 32.0 bits (71), Expect = 0.90 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%) Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142 G G+K +G+ ++ G+ PGP GP G GPP GP PP Sbjct: 381 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 426 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G NG+K +RG A G PGP G +GP GP Sbjct: 823 GANGEKGARGVA--------GKPGPRGQRGPTGP 848 Score = 31.2 bits (69), Expect = 1.5 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP PP G P P G P E+ P A + G +G Sbjct: 643 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 692 Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 GK + + G GPPGP GP G PGP Sbjct: 693 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 722 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/17 (70%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G GP G PGP+GPPGP Sbjct: 883 GPQGPVGFPGPKGPPGP 899 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142 P ML R G G S +A+ + + L GPPGP G G PGP+ P Sbjct: 450 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 507 Score = 30.4 bits (67), Expect = 2.6 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G PM RP GP A GE+ P G+ PT + P Sbjct: 490 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 544 Query: 96 MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 +G+ G+ ++G + GLPG G G +GP GP PP Sbjct: 545 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 588 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/21 (61%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G G PGP G GP GPI PP Sbjct: 652 GQQGNPGPQGLPGPQGPIGPP 672 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 889 GFPGPKGPPGPPGKDG 904 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G+ GPPG GP GPPG Sbjct: 412 GIMGPPGLQGPTGPPG 427 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPG PG +GPPG Sbjct: 421 GPTGPPGDPGDRGPPG 436 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137 G G++ +G + F G GPPGPPG G PG Sbjct: 874 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 907 Score = 29.6 bits (65), Expect = 4.5 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171 G PG PG PG G PGP P L+ F+ KG + A+ + G Sbjct: 433 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 490 Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214 P GP+ + PV GD PGP+ PR Sbjct: 491 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 525 Score = 29.6 bits (65), Expect = 4.5 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%) Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87 GG A S P+ GP PP G +P + RP G + EP A+ Sbjct: 505 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 561 Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 D DKG G++ +G PGPPG G +G G I P Sbjct: 562 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 602 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/17 (64%), Positives = 11/17 (64%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PG PG G GPPGP Sbjct: 622 GAPGQPGMAGVDGPPGP 638 Score = 28.9 bits (63), Expect = 7.6 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162 KG G K RG+ ++ G GP GP G GP G P ++ +L + G R Sbjct: 750 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 809 Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189 P+ T P P A AG+ Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGK 836 Score = 28.9 bits (63), Expect = 7.6 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%) Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89 TG R A + K P+ G PP GE P P G + P Sbjct: 846 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 904 Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 P G G+ +GK GPPGP G GP GP Sbjct: 905 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 935 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%) Query: 105 GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137 G G++ S G A + GLPG PPGP G +G PG Sbjct: 1018 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1054 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/17 (64%), Positives = 12/17 (70%) Query: 122 GLPGPPGPPGPQGPPGP 138 GLPGP GP G +G GP Sbjct: 1465 GLPGPQGPKGNKGSTGP 1481 >gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo sapiens] Length = 1806 Score = 43.5 bits (101), Expect = 3e-04 Identities = 32/74 (43%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPG---PQGPPGPIIPPEALLKEFQLLLKGAVRQRE 161 GV G K G G PGPPGP G P GPPG PP A E + KGA + Sbjct: 1330 GVGGDKGEDGDP-----GQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA-KGEA 1383 Query: 162 RAEPEPCTCGPAGP 175 AE P GP GP Sbjct: 1384 GAEGPPGKTGPVGP 1397 Score = 40.0 bits (92), Expect = 0.003 Identities = 54/188 (28%), Positives = 62/188 (32%), Gaps = 53/188 (28%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGG-EAEPSEANRPAGLAVFQEPTAERAHSVDPRDA 94 G PM P GP P A G + P G+ EP E + P +A Sbjct: 1213 GDVGPMGPPGPP--GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEP-GEAGNPGPPGEA 1269 Query: 95 WMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLK 154 GV G K RG+ K + G PG GPPG +GPPG P Sbjct: 1270 ----------GVGGPKGERGE--KGEAGPPGAAGPPGAKGPPGDDGP------------- 1304 Query: 155 GAVRQRERAEPEPC----TCGPAG-PVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPG 209 + P P GP G P A V GED D P PG Sbjct: 1305 -------KGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD------------PGQPG 1345 Query: 210 PRAPRVEA 217 P P EA Sbjct: 1346 PPGPSGEA 1353 Score = 39.3 bits (90), Expect = 0.006 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 18/181 (9%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANR--PAGLAVFQEPTAERAHSVDPRD 93 G+A P+ RP P+ P AG + P E PAG Q P + Sbjct: 1066 GTAGPIGLPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGS 1121 Query: 94 AWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLL 153 DKG G+ +G G G GPPGP G GP+ P + + Sbjct: 1122 PG----EDGDKGEIGEPGQKGSK-----GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGP 1172 Query: 154 KGAVRQRERAEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 +G + E P P L + GE ++ GDV + P PGPR P Sbjct: 1173 RGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN--GDV-GPMGPPGPPGPRGP 1229 Query: 214 R 214 + Sbjct: 1230 Q 1230 Score = 37.7 bits (86), Expect = 0.016 Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 19/100 (19%) Query: 57 PPRAGGEAEPSEANRPAGLAVFQEPT-----AERAHSVDPRDAWMLFVRQSDKGVNGKKR 111 P + G + + E N P G Q P A PR +F ++ D+G G Sbjct: 1134 PGQKGSKGDKGE-NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPG 1192 Query: 112 SRG-------------KAKKLKFGLPGPPGPPGPQGPPGP 138 G K + G GPPGPPGP+GP GP Sbjct: 1193 PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGP 1232 Score = 37.7 bits (86), Expect = 0.016 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G P + P GP P A G+ P P GL + + P Sbjct: 1402 GKPGPEGLRGIP--GPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIG 1459 Query: 96 MLFV--RQSDKGVNGKKRSRGK-AKKLKFGLPGPPGP---PGPQGPPGP 138 ++ Q +KG G ++G K G+PGP GP PGP G PGP Sbjct: 1460 LIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGP 1508 Score = 37.4 bits (85), Expect = 0.021 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALL 146 +G G K S G A + G G PGPPG GPPG +I P +L Sbjct: 1509 QGPKGNKGSTGPAGQK--GDSGLPGPPGSPGPPGEVIQPLPIL 1549 Score = 36.6 bits (83), Expect = 0.037 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 53 PRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRS 112 P P AGG+ EP + G+ + R P + Q G G+K Sbjct: 1157 PVGAPGIAGGDGEPGPRGQQ-GMFGQKGDEGARGFPGPPGPIGL----QGLPGPPGEKGE 1211 Query: 113 RGKAKKLKFGLPGPPGPPGPQGP---PGPIIPP 142 G + G PGPPGP GPQGP GP PP Sbjct: 1212 NGDVGPM--GPPGPPGPRGPQGPNGADGPQGPP 1242 Score = 35.4 bits (80), Expect = 0.082 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 104 KGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPI 139 +G GK +G + G PGPPG GPQGP GP+ Sbjct: 894 RGPTGKPGPKGTSGG--DGPPGPPGERGPQGPQGPV 927 Score = 35.4 bits (80), Expect = 0.082 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 51/154 (33%) Query: 36 GSASPMSAKSRP-----RCGPFPRSHPPRAGGEAEPSEANR------------------- 71 G+A P AK P + P P P G EP A + Sbjct: 1288 GAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP 1347 Query: 72 -PAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLK---------- 120 P+G A P +R P A RQ +KG G+ + G K Sbjct: 1348 GPSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403 Query: 121 ------FGLPGP------PGPPGPQGPPGPIIPP 142 G+PGP PG G GPPGP+ PP Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP 1437 Score = 35.0 bits (79), Expect = 0.11 Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 31/147 (21%) Query: 54 RSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFV--------RQSDKG 105 ++ PP GG P G P ER H P + + D G Sbjct: 959 KTGPPGPGGVVGPQGPTGETG------PIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG 1012 Query: 106 VNGKKRSRGKAKKLKF----GLPGPPGPPG------PQGPPGPIIPPEALLKEFQLLLKG 155 G G A F GLPG G PG PQGPPGP+ P + G Sbjct: 1013 PQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPG---ERGSAGTAG 1069 Query: 156 AVRQRERAEPEPCTCGPAGPVAASLAP 182 + R P+ GP GP AP Sbjct: 1070 PIGLPGRPGPQ----GPPGPAGEKGAP 1092 Score = 33.9 bits (76), Expect = 0.24 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%) Query: 100 RQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 R G G ++G++ G PGP GP G QGPPGP P Sbjct: 539 RPGPVGGPGSSGAKGES-----GDPGPQGPRGVQGPPGPTGKP 576 Score = 32.7 bits (73), Expect = 0.53 Identities = 13/17 (76%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PGP G PGPQGP GP Sbjct: 694 GNPGPQGLPGPQGPIGP 710 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 GV+G +G G G PGPPG QG PGP Sbjct: 670 GVDGPPGPKGN-----MGPQGEPGPPGQQGNPGP 698 Score = 32.3 bits (72), Expect = 0.69 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 D G +G+ +GK G+PG PG PG QGP G Sbjct: 824 DPGPSGQAGEKGK-----LGVPGLPGYPGRQGPKG 853 Score = 32.0 bits (71), Expect = 0.90 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%) Query: 105 GVNGKKRSRGKAKKLKFGL-----PGPPGPPGPQGPP---GPIIPP 142 G G+K +G+ ++ G+ PGP GP G GPP GP PP Sbjct: 420 GAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPP 465 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 G NG+K +RG A G PGP G +GP GP Sbjct: 862 GANGEKGARGVA--------GKPGPRGQRGPTGP 887 Score = 31.2 bits (69), Expect = 1.5 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 11/90 (12%) Query: 50 GPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAWMLFVRQSDKGVNGK 109 GP PP G P P G P E+ P A + G +G Sbjct: 682 GPQGEPGPPGQQGNPGPQGLPGPQGPI---GPPGEKGPQGKPGLAGL-------PGADGP 731 Query: 110 KRSRGK-AKKLKFGLPGPPGPPGPQGPPGP 138 GK + + G GPPGP GP G PGP Sbjct: 732 PGHPGKEGQSGEKGALGPPGPQGPIGYPGP 761 Score = 31.2 bits (69), Expect = 1.5 Identities = 12/17 (70%), Positives = 13/17 (76%) Query: 122 GLPGPPGPPGPQGPPGP 138 G GP G PGP+GPPGP Sbjct: 922 GPQGPVGFPGPKGPPGP 938 Score = 30.4 bits (67), Expect = 2.6 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Query: 91 PRDAWMLFVRQSDKGVNGKKRSRGKAK------KLKFGLPGPPGPPGPQGPPGPIIPP 142 P ML R G G S +A+ + + L GPPGP G G PGP+ P Sbjct: 489 PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 546 Score = 30.4 bits (67), Expect = 2.6 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 36 GSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95 G PM RP GP A GE+ P G+ PT + P Sbjct: 529 GPPGPMGLTGRP--GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPG--- 583 Query: 96 MLFVRQSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 +G+ G+ ++G + GLPG G G +GP GP PP Sbjct: 584 ----ADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPP 627 Score = 30.4 bits (67), Expect = 2.6 Identities = 13/21 (61%), Positives = 13/21 (61%) Query: 122 GLPGPPGPPGPQGPPGPIIPP 142 G G PGP G GP GPI PP Sbjct: 691 GQQGNPGPQGLPGPQGPIGPP 711 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/16 (68%), Positives = 11/16 (68%) Query: 122 GLPGPPGPPGPQGPPG 137 G PGP GPPGP G G Sbjct: 928 GFPGPKGPPGPPGKDG 943 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G+ GPPG GP GPPG Sbjct: 451 GIMGPPGLQGPTGPPG 466 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/16 (68%), Positives = 12/16 (75%) Query: 122 GLPGPPGPPGPQGPPG 137 G GPPG PG +GPPG Sbjct: 460 GPTGPPGDPGDRGPPG 475 Score = 30.0 bits (66), Expect = 3.4 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 105 GVNGKKRSRGKAKKLKF-GLPGPPGPPGPQGPPG 137 G G++ +G + F G GPPGPPG G PG Sbjct: 913 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPG 946 Score = 29.6 bits (65), Expect = 4.5 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 24/105 (22%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALLKEFQL---LLKGAVRQRERAEPEP-------CTCG 171 G PG PG PG G PGP P L+ F+ KG + A+ + G Sbjct: 472 GPPGRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG 529 Query: 172 PAGPVAAS--LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPR 214 P GP+ + PV GD PGP+ PR Sbjct: 530 PPGPMGLTGRPGPVGGPGSSGAKGESGD----------PGPQGPR 564 Score = 29.6 bits (65), Expect = 4.5 Identities = 33/114 (28%), Positives = 42/114 (36%), Gaps = 19/114 (16%) Query: 31 GGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPA---GLAVFQEPTAERAH 87 GG A S P+ GP PP G +P + RP G + EP A+ Sbjct: 544 GGPGSSGAKGESGDPGPQ-GPRGVQGPP--GPTGKPGKRGRPGADGGRGMPGEPGAKGDR 600 Query: 88 SVDPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIP 141 D DKG G++ +G PGPPG G +G G I P Sbjct: 601 GFDGLPGL-----PGDKGHRGERGPQGP--------PGPPGDDGMRGEDGEIGP 641 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/17 (64%), Positives = 11/17 (64%) Query: 122 GLPGPPGPPGPQGPPGP 138 G PG PG G GPPGP Sbjct: 661 GAPGQPGMAGVDGPPGP 677 Score = 28.9 bits (63), Expect = 7.6 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 104 KGVNGKKRSRGKAKKL-KFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162 KG G K RG+ ++ G GP GP G GP G P ++ +L + G R Sbjct: 789 KGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 848 Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGE 189 P+ T P P A AG+ Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGK 875 Score = 28.9 bits (63), Expect = 7.6 Identities = 30/109 (27%), Positives = 35/109 (32%), Gaps = 19/109 (17%) Query: 30 TGGRHLGSASPMSAKSRPRCGPFPRSHPPRAGGEAEPSEANRPAGLAVFQEPTAERAHSV 89 TG R A + K P+ G PP GE P P G + P Sbjct: 885 TGPRGSRGARGPTGKPGPK-GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDG 943 Query: 90 DPRDAWMLFVRQSDKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGP 138 P G G+ +GK GPPGP G GP GP Sbjct: 944 LP----------GHPGQRGETGFQGKT--------GPPGPGGVVGPQGP 974 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%) Query: 105 GVNGKKRSRGKAKKLKFGLPG------PPGPPGPQGPPG 137 G G++ S G A + GLPG PPGP G +G PG Sbjct: 1057 GSPGERGSAGTAGPI--GLPGRPGPQGPPGPAGEKGAPG 1093 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/17 (64%), Positives = 12/17 (70%) Query: 122 GLPGPPGPPGPQGPPGP 138 GLPGP GP G +G GP Sbjct: 1504 GLPGPQGPKGNKGSTGP 1520 >gi|56606142 complement component 1, q subcomponent-like 4 [Homo sapiens] Length = 238 Score = 43.1 bits (100), Expect = 4e-04 Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 5/33 (15%) Query: 105 GVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPG 137 G G+ RGKA GL GPPGPPGP+GPPG Sbjct: 55 GAKGEVGRRGKA-----GLRGPPGPPGPRGPPG 82 Score = 33.1 bits (74), Expect = 0.41 Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Query: 122 GLPGPPGPPGPQGP-PGPIIP 141 G PG PGPPGP GP PG + P Sbjct: 82 GEPGRPGPPGPPGPGPGGVAP 102 Score = 28.5 bits (62), Expect = 10.0 Identities = 41/154 (26%), Positives = 51/154 (33%), Gaps = 34/154 (22%) Query: 124 PGPPGPPGPQGPPG--PIIPPEALLKEFQLLLKGAVRQRERA--EPEPCTCGPAGPVAAS 179 P P PGP G P P PP A KG V +R +A P GP GP Sbjct: 34 PHGPRGPGPDGAPASVPPFPPGA---------KGEVGRRGKAGLRGPPGPPGPRGPPGEP 84 Query: 180 LAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAPRVEAAFLCRLRRDALVERRALHELGV 239 P P PGP A ++ R+ A + R HE G Sbjct: 85 GRPGP------------------PGPPGPGPGGVAPAAGYVPRIAFYAGLRRP--HE-GY 123 Query: 240 YYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALA 273 L + G SG++ P+ G Y A Sbjct: 124 EVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFA 157 >gi|18641360 collectin sub-family member 12 [Homo sapiens] Length = 742 Score = 43.1 bits (100), Expect = 4e-04 Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Query: 101 QSDKGVNGKKRSRGKAKKL----KFGLPGPPGPPGPQGPPGPIIPP 142 + KG G K SRG K G PGPPGPPG +G PGP PP Sbjct: 499 KGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPP 544 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 101 QSDKGVNGKKRSRG-KAKKLKFGLPGPPGPPGPQGPPGPIIPP 142 + D+G G G K +K + G PGPPGP G +GP GP PP Sbjct: 451 RGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPP 493 Score = 40.0 bits (92), Expect = 0.003 Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 26/111 (23%) Query: 103 DKGVNGKKRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRER 162 ++G G K S+G K G PG PGP GP G PGP PP Sbjct: 495 ERGGKGSKGSQGP--KGSRGSPGKPGPQGPSGDPGPPGPP-------------------G 533 Query: 163 AEPEPCTCGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 E P GP GP + T GE + L P PGP+ P Sbjct: 534 KEGLP---GPQGP--PGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGP 579 Score = 38.9 bits (89), Expect = 0.007 Identities = 16/25 (64%), Positives = 19/25 (76%) Query: 122 GLPGPPGPPGPQGPPGPIIPPEALL 146 GLPG PG PGP+GPPGP P A++ Sbjct: 566 GLPGVPGMPGPKGPPGPPGPSGAVV 590 Score = 38.9 bits (89), Expect = 0.007 Identities = 13/20 (65%), Positives = 16/20 (80%) Query: 122 GLPGPPGPPGPQGPPGPIIP 141 G+PGP GPPGP GP G ++P Sbjct: 572 GMPGPKGPPGPPGPSGAVVP 591 Score = 34.3 bits (77), Expect = 0.18 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 11/92 (11%) Query: 123 LPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEP-EPCTCGPAGPVAASLA 181 L GPPGP GP+G G PP + Q KG E+ EP P G GP+ + Sbjct: 441 LQGPPGPRGPRGDRGSQGPPGPTGNKGQ---KG-----EKGEPGPPGPAGERGPIGPA-G 491 Query: 182 PVSATAGEDDDDVVGDVLALLAAPLAPGPRAP 213 P G+ G +P PGP+ P Sbjct: 492 PPGERGGKGSKGSQGP-KGSRGSPGKPGPQGP 522 Score = 29.3 bits (64), Expect = 5.8 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 3/24 (12%) Query: 122 GLPGP---PGPPGPQGPPGPIIPP 142 G+PGP PG PG G PGP PP Sbjct: 557 GVPGPRGLPGLPGVPGMPGPKGPP 580 Score = 29.3 bits (64), Expect = 5.8 Identities = 11/18 (61%), Positives = 12/18 (66%) Query: 122 GLPGPPGPPGPQGPPGPI 139 G GPPGPPGP G P+ Sbjct: 575 GPKGPPGPPGPSGAVVPL 592 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,793,095 Number of Sequences: 37866 Number of extensions: 1166005 Number of successful extensions: 23745 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 213 Number of HSP's successfully gapped in prelim test: 339 Number of HSP's that attempted gapping in prelim test: 8511 Number of HSP's gapped (non-prelim): 7602 length of query: 367 length of database: 18,247,518 effective HSP length: 104 effective length of query: 263 effective length of database: 14,309,454 effective search space: 3763386402 effective search space used: 3763386402 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.