Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169161029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 558 e-159
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 72 7e-13
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 65 8e-11
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 65 8e-11
gi|48762934 alpha 2 type I collagen [Homo sapiens] 64 2e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 61 9e-10
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 60 2e-09
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 57 1e-08
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 57 1e-08
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 57 1e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 57 2e-08
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 56 3e-08
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 56 3e-08
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 56 3e-08
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 56 3e-08
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 56 4e-08
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 56 4e-08
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 55 5e-08
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 55 5e-08
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 55 5e-08
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 55 5e-08
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 55 5e-08
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 55 5e-08
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 55 5e-08
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 55 5e-08
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 55 5e-08
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 55 5e-08
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 55 5e-08
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 55 6e-08
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 54 1e-07
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 558 bits (1437), Expect = e-159
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MGQEFQAFEARPNRRGTLQPGRGFDPALRSYNCETLGVVVRSCGILLRACRRSLACPAVR 60
MGQEFQAFEARPNRRGTLQPGRGFDPALRSYNCETLGVVVRSCGILLRACRRSLACPAVR
Sbjct: 1 MGQEFQAFEARPNRRGTLQPGRGFDPALRSYNCETLGVVVRSCGILLRACRRSLACPAVR 60
Query: 61 GCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
GCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP
Sbjct: 61 GCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG
Sbjct: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLLRAGPA 240
ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLLRAGPA
Sbjct: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLLRAGPA 240
Query: 241 LHCPPSVGRGFVFIATLPSRKHLHCADG 268
LHCPPSVGRGFVFIATLPSRKHLHCADG
Sbjct: 241 LHCPPSVGRGFVFIATLPSRKHLHCADG 268
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 71.6 bits (174), Expect = 7e-13
Identities = 58/161 (36%), Positives = 69/161 (42%), Gaps = 21/161 (13%)
Query: 66 GSPGVSAQGG-PLE-GTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G+PG+ + G P E G P P P AP R + G G A ARG D +G
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGPRGAPG--------ERGRPGLPGAAGARGNDGARGSDG 330
Query: 124 GRSPGG-----GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
P G G SPGA+G VG A + + P R PQ P PG
Sbjct: 331 QPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP--PGPPGI 388
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRG 215
G+ GG+G G G+PG GL GA PP G P LRG
Sbjct: 389 NGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRG 429
Score = 64.3 bits (155), Expect = 1e-10
Identities = 56/167 (33%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 61 GCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA---RARGL-- 115
G G+PG +GGP P G A P Q ++ R GG G A ARGL
Sbjct: 823 GKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPG 882
Query: 116 ---DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQ--MPLRVLPP 170
PG G S G + PG G G AP + P+G + + + P PP
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTG-APGSPGVSGPKGDAGQPGEKGSPGAQGPP 941
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
PG G TG RGL G G+PG G P P GV G+P
Sbjct: 942 GAPGPLGIAGITGARGLAGPPGMPGPRG-----SPGPQGVKGESGKP 983
Score = 57.4 bits (137), Expect = 1e-08
Identities = 54/161 (33%), Positives = 61/161 (37%), Gaps = 22/161 (13%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG +GG G P A P +P R + G G A G APG+ G
Sbjct: 774 GQPGDKGEGGA-PGLPGIAGPRGSPG--------ERGETGPPGPAGFPG----APGQNGE 820
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G G +PG +G G A P G P P V G + G G
Sbjct: 821 PGGKGERGAPGEKGEGGPPGVAG---PPGGSGPAGPPGPQGV-----KGERGSPGGPGAA 872
Query: 186 GLPGRRGLPGRSGLQGAAVPP-PVGVPSLRGRPWEALATAA 225
G PG RGLPG G G PP P G P G P A T A
Sbjct: 873 GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGA 913
Score = 53.1 bits (126), Expect = 2e-07
Identities = 54/166 (32%), Positives = 60/166 (36%), Gaps = 27/166 (16%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG GP G P A P P P G G + G D + G GR
Sbjct: 192 GSPGSPGYQGP-PGEPGQAGPSGPPGPP-----------GAIGPSGPAGKDGES-GRPGR 238
Query: 126 SPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLPPI--LPGLSRAGGA 181
GL PG +G G P HR GR+ + L LPG + A G
Sbjct: 239 PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP 298
Query: 182 TGGRGLPGRRGLPGRSGLQGA----------AVPPPVGVPSLRGRP 217
G RG PG RG PG G GA P P G P G P
Sbjct: 299 MGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFP 344
Score = 53.1 bits (126), Expect = 2e-07
Identities = 57/177 (32%), Positives = 71/177 (40%), Gaps = 25/177 (14%)
Query: 66 GSPGV-SAQG--GPLEGTPRPAAPGAAPRPRRQRL------RRRRAKVGGWGCARARGLD 116
G+PG+ A+G GP P G A P + R R + G G A+G D
Sbjct: 405 GAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGED 464
Query: 117 RR--APGEGGRS--PGG-GLEPSPGARGAVGA-------APAAARHRKPRGRSRRAPQMP 164
+ +PGE G + PG G +PG RG G PA R R A P
Sbjct: 465 GKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEP 524
Query: 165 LRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
R P PG+ G+ GG G G+ G PG G G PP P G P + G P
Sbjct: 525 GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP 581
Score = 52.4 bits (124), Expect = 4e-07
Identities = 49/159 (30%), Positives = 59/159 (37%), Gaps = 37/159 (23%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G PG + + GP +G P P PG + G G +GL PG GG
Sbjct: 605 QGPPGKNGETGP-QGPPGPTGPGGD-----------KGDTGPPGPQGLQGL----PGTGG 648
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
G PG +G GA A R P PGL+ A G GG
Sbjct: 649 PPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGP-----------PGLAGAPGLRGG 697
Query: 185 RGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRPWE 219
G PG G +GAA PP G P L+G P E
Sbjct: 698 AGPPGPE------GGKGAAGPPGPPGAAGTPGLQGMPGE 730
Score = 50.8 bits (120), Expect = 1e-06
Identities = 52/156 (33%), Positives = 59/156 (37%), Gaps = 24/156 (15%)
Query: 75 GPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPS 134
G L G P PA P P P G G + G + PGE G++ G
Sbjct: 167 GGLAGYPGPAGPPGPPGP--------PGTSGHPGSPGSPGY-QGPPGEPGQAGPSGPPGP 217
Query: 135 PGARGAVGAAPAAARHRKP-RGRSRRAPQMPLRVLPPILPGL----------SRAG--GA 181
PGA G G A +P R R P P P +PG R G G
Sbjct: 218 PGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGE 277
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
TG GL G GLPG +G G P G P RGRP
Sbjct: 278 TGAPGLKGENGLPGENGAPGPM--GPRGAPGERGRP 311
Score = 50.4 bits (119), Expect = 2e-06
Identities = 48/159 (30%), Positives = 54/159 (33%), Gaps = 10/159 (6%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG GP T P +PG + + G G A G A G R
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR 956
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G PG RG+ G KP + P P LPGL+ G G
Sbjct: 957 GLAGP-PGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG--PQGLPGLAGTAGEPGRD 1013
Query: 186 GLPGRRGLPGRSGLQGA-------AVPPPVGVPSLRGRP 217
G PG GLPGR G G P G P G P
Sbjct: 1014 GNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP 1052
Score = 50.1 bits (118), Expect = 2e-06
Identities = 49/165 (29%), Positives = 59/165 (35%), Gaps = 20/165 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR------- 118
GSPG + GP APG P Q + G G + G
Sbjct: 345 GSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIP 404
Query: 119 -APG-EGGRSPGG--GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
APG G R P G G +PG RG G +P R R P +PG
Sbjct: 405 GAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERG-----EAGIPGVPG 459
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRG 215
G G G PG GLPG +G +GA P G+P +G
Sbjct: 460 AKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG 504
Score = 49.7 bits (117), Expect = 3e-06
Identities = 54/160 (33%), Positives = 64/160 (40%), Gaps = 14/160 (8%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
+ G G S GP G P PA AP P Q R + + G G A +G R PG
Sbjct: 1060 KSGDRGESGPAGPA-GAPGPAGSRGAPGP--QGPRGDKGETGERGAAGIKG-HRGFPG-- 1113
Query: 124 GRSPGGGLEPSP-GARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
+PG P P G +GA+G+ P A R P G S P + PG G
Sbjct: 1114 --NPGAPGSPGPAGQQGAIGS-PGPAGPRGPVGPSGP----PGKDGTSGHPGPIGPPGPR 1166
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALA 222
G RG G G PG G G PP P G A+A
Sbjct: 1167 GNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA 1206
Score = 46.2 bits (108), Expect = 3e-05
Identities = 50/154 (32%), Positives = 60/154 (38%), Gaps = 25/154 (16%)
Query: 66 GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G+PG GP + G PA AP P R G A G D G G
Sbjct: 486 GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPR-----------GAAGEPGRDGVPGGPG 534
Query: 124 GR----SPGG-GLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
R SPGG G + PG G+ G + P PRG+ P + P G
Sbjct: 535 MRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ----PGVMGFPGPKGNDGAP 590
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVG 209
G GG G PG +G PG++G G PP P G
Sbjct: 591 GKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Score = 46.2 bits (108), Expect = 3e-05
Identities = 55/185 (29%), Positives = 68/185 (36%), Gaps = 32/185 (17%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPG------AAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
+G G+ GGP +P PG A P + + G G A A GL
Sbjct: 638 QGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGG 697
Query: 119 A--PG-EGGRSPGG-----------GLEPSPGARGAVGAAPAAARHRKPRGRSR------ 158
A PG EGG+ G GL+ PG RG +G+ +P G
Sbjct: 698 AGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK 757
Query: 159 ---RAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLR 214
R P P+ PP G G G GLPG G G G +G PP P G P
Sbjct: 758 DGPRGPTGPIG--PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAP 815
Query: 215 GRPWE 219
G+ E
Sbjct: 816 GQNGE 820
Score = 46.2 bits (108), Expect = 3e-05
Identities = 55/178 (30%), Positives = 65/178 (36%), Gaps = 33/178 (18%)
Query: 65 EGSPGVSAQGGPLEGTPRP------------AAPGAAPRPRR----QRLRRRRAKVGGWG 108
+GSPG AQG P G P P A P P PR Q ++ K G G
Sbjct: 932 KGSPG--AQGPP--GAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANG 987
Query: 109 CARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRR-------AP 161
+ RG PG G G PG G G+ R P G+ R AP
Sbjct: 988 LSGERG----PPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP 1043
Query: 162 QMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
P PP G + G G G G G PG +G +GA P P G +G E
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA--PGPQGPRGDKGETGE 1099
Score = 46.2 bits (108), Expect = 3e-05
Identities = 52/176 (29%), Positives = 61/176 (34%), Gaps = 22/176 (12%)
Query: 57 PAVRGCKRE----GSPGVSAQGGP--LEGTPRPAA----PGAAPRPRRQRLRRRRAKVGG 106
P +G K E G+ G+S + GP +G P A PG P L R GG
Sbjct: 971 PGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGG 1030
Query: 107 WGCARARGLDRRAPGEGGRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMP 164
G G G P G + P+ G RG G A A R PQ P
Sbjct: 1031 KGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090
Query: 165 LRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
G G G G+ G RG PG G G+ P P G G P A
Sbjct: 1091 --------RGDKGETGERGAAGIKGHRGFPGNPGAPGS--PGPAGQQGAIGSPGPA 1136
Score = 45.8 bits (107), Expect = 4e-05
Identities = 49/158 (31%), Positives = 56/158 (35%), Gaps = 12/158 (7%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
R+GSPG G P APG P + G G A G APG
Sbjct: 1024 RDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAG----APGPA 1079
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAA--RHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
G G + G +G G AA HR G P P P G + G
Sbjct: 1080 GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGN----PGAPGSPGPAGQQGAIGSPGP 1135
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G RG G G PG+ G G P P+G P RG E
Sbjct: 1136 AGPRGPVGPSGPPGKDGTSGH--PGPIGPPGPRGNRGE 1171
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/152 (30%), Positives = 54/152 (35%), Gaps = 18/152 (11%)
Query: 66 GSPGVSAQGGPL-----EGTPRPAAPGAAPRPRR-QRLRRRRAKVGGWGCARARGLD--R 117
GSPGVS G +G+P P AP P + R G G RG +
Sbjct: 915 GSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQ 974
Query: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177
GE G+ GL G G G A +P GR L PG
Sbjct: 975 GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEP-GRDGNPGSDGL-------PGRDG 1026
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVG 209
+ G G RG G G PG G G P PVG
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGP--PGPVG 1056
Score = 40.4 bits (93), Expect = 0.002
Identities = 37/129 (28%), Positives = 44/129 (34%), Gaps = 29/129 (22%)
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM------------ 163
D PG GR+ G+ PG+ G+ G P P G +PQ
Sbjct: 110 DPGPPGIPGRNGDPGIPGQPGSPGSPG--PPGICESCPTGPQNYSPQYDSYDVKSGVAVG 167
Query: 164 -----PLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----------PV 208
P PP PG G G G PG +G PG G G + PP P
Sbjct: 168 GLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPA 227
Query: 209 GVPSLRGRP 217
G GRP
Sbjct: 228 GKDGESGRP 236
Score = 30.0 bits (66), Expect = 2.2
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 161 PQMPLRVLPPILPGLSRAGGATGGRGLPGRR---GLPGRSGLQGAAVPPPV 208
P P R PP G G G G+PGR G+PG+ G G+ PP +
Sbjct: 92 PTAPTR--PPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGI 140
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 64.7 bits (156), Expect = 8e-11
Identities = 58/168 (34%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 57 PAVRGCKRE-GSPGVSAQGG-PLE-GTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARAR 113
P + G K E G+PGV + G P E G+P P P P R + G G A AR
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPG--------ERGRTGPAGAAGAR 344
Query: 114 GLDRRA-----PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL 168
G D + PG G + G G +PGA+G G P AR + R P P
Sbjct: 345 GNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG--PTGARGPEGAQGPRGEPGTPGS-- 400
Query: 169 PPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRG 215
PG + A G G G+PG +G G G+ GA P P G P +G
Sbjct: 401 ----PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 444
Score = 55.1 bits (131), Expect = 6e-08
Identities = 66/200 (33%), Positives = 76/200 (38%), Gaps = 51/200 (25%)
Query: 66 GSPGVSA---QGGPLEGTPRPAAPGAAPRPRRQRLRR----------------RRAKVGG 106
G PG++ + GP +G P PA P AP P + +R R G
Sbjct: 456 GEPGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGN 514
Query: 107 WGCARARGL--DRRAPGEGGRS-----------PGGGLEPS-PGARGAVGAAPAAARHRK 152
G GL + APGE G S PG EP PGARG G A K
Sbjct: 515 RGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 574
Query: 153 ------PRGRSRRAPQMP--LRVLPPIL--PGLSRAGGATGGRG------LPGRRGLPGR 196
P R P P R P ++ PG A G G G PG RGLPG+
Sbjct: 575 VGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 634
Query: 197 SGLQGAAVPP-PVGVPSLRG 215
G GAA PP P G RG
Sbjct: 635 DGETGAAGPPGPAGPAGERG 654
Score = 50.8 bits (120), Expect = 1e-06
Identities = 46/143 (32%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G+PG + GP PGA +P + + + G G +G APG G
Sbjct: 819 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG-PSGAPGPQGP 877
Query: 126 SPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
+ G + + GA+G GA P AA P G + PP PG S G G
Sbjct: 878 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG-------PPGPPGPSGKDGPKG 930
Query: 184 GRGLPGRRGLPGRSGLQGAAVPP 206
RG G G G GLQG A PP
Sbjct: 931 ARGDSGPPGRAGEPGLQGPAGPP 953
Score = 49.7 bits (117), Expect = 3e-06
Identities = 50/157 (31%), Positives = 58/157 (36%), Gaps = 35/157 (22%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PGEG 123
G PG + G G P PA P R + G G + +GL PGEG
Sbjct: 630 GLPGKDGETGAA-GPPGPAGPAG-----------ERGEQGAPGPSGFQGLPGPPGPPGEG 677
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
G+ G+ GA G VG PRG + G A G G
Sbjct: 678 GKPGDQGVPGEAGAPGLVG----------PRGERGFPGER----------GSPGAQGLQG 717
Query: 184 GRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRGRPWE 219
RGLPG G G G G A PP G P L+G P E
Sbjct: 718 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGE 754
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/157 (29%), Positives = 55/157 (35%), Gaps = 23/157 (14%)
Query: 65 EGSPGVSAQGGPL-----EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA 119
+G PG + G G P P P AP P+ G G ARG +
Sbjct: 842 DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ--------GPTGVTGPKGARGA-QGP 892
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG 179
PG G G PG+ G G K + R P PG +
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP--------PGRAGEP 944
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G G G PG +G PG G GA PP P G+ RG
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981
Score = 49.3 bits (116), Expect = 4e-06
Identities = 58/177 (32%), Positives = 68/177 (38%), Gaps = 24/177 (13%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
EG+PG G L G P P A + +VG G A + G R APGE G
Sbjct: 776 EGAPGKDGGRG-LTGPIGPPGPAGA--------NGEKGEVGPPGPAGSAGA-RGAPGERG 825
Query: 125 RS----PGG-----GLEPSPGARGAVGAA--PAAARHRKPRGRSRR-APQMPLRVLPPIL 172
+ P G G + PGA+G G A A P+G S PQ P V P
Sbjct: 826 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP-- 883
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRR 229
G A G G G PG G G G G PP PS + P A + P R
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR 940
Score = 48.9 bits (115), Expect = 5e-06
Identities = 50/153 (32%), Positives = 58/153 (37%), Gaps = 11/153 (7%)
Query: 64 REGSPG-VSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
++G PG + GP +G P P P PR R G G RG D
Sbjct: 105 QKGEPGDIKDIVGP-KGPPGPQGPAGEQGPRGDR-----GDKGEKGAPGPRGRDGEPGTP 158
Query: 123 GGRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLSRAG 179
G P G P PG G A A K G Q P+ + P PG + A
Sbjct: 159 GNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAP 218
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVP 211
G G +G PG G PG SG G PP P G P
Sbjct: 219 GPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 251
Score = 48.9 bits (115), Expect = 5e-06
Identities = 57/178 (32%), Positives = 65/178 (36%), Gaps = 27/178 (15%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P RG G PG + G + + P G P Q R + +G G A G
Sbjct: 557 PGARGLT--GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEP 614
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLP--PIL 172
+A GE G GL PG G GAA P A RG + LP P
Sbjct: 615 GKA-GEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 673
Query: 173 PGLS----------RAG-----GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
PG AG G G RG PG RG PG GLQG P G+P G
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG-----PRGLPGTPG 726
Score = 48.9 bits (115), Expect = 5e-06
Identities = 48/159 (30%), Positives = 58/159 (36%), Gaps = 22/159 (13%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G PG + G + PG P Q L+ R G G +G A G
Sbjct: 683 QGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 742
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
+ P GL+ PG RGA G A P+G + G A G GG
Sbjct: 743 QGP-PGLQGMPGERGAAGIA-------GPKGDRGDVGE----------KGPEGAPGKDGG 784
Query: 185 RGLPGRRGLPGRSGLQG----AAVPPPVGVPSLRGRPWE 219
RGL G G PG +G G P P G RG P E
Sbjct: 785 RGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGE 823
Score = 48.9 bits (115), Expect = 5e-06
Identities = 50/157 (31%), Positives = 57/157 (36%), Gaps = 24/157 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG GP + PGA P Q + R G G A +G DR GE G
Sbjct: 720 GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER---GAAGIAGPKG-DRGDVGEKGP 775
Query: 126 SPGGGLEPSPGARGAVGA-APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
G + G G +G PA A K V PP G+ G
Sbjct: 776 EGAPGKDGGRGLTGPIGPPGPAGANGEKGE------------VGPP------GPAGSAGA 817
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRGRPWEA 220
RG PG RG G G G A PP G P +G EA
Sbjct: 818 RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 854
Score = 48.9 bits (115), Expect = 5e-06
Identities = 55/174 (31%), Positives = 65/174 (37%), Gaps = 33/174 (18%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G+PG S GP P G A P R+ G G A +G DR G
Sbjct: 1006 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG-DRGETGAV 1064
Query: 124 GRSPGGGLEPSPGARGAVG----------------AAPAAARH----RKPRGRSRRAPQM 163
G G SPG G G + PA AR + PRG A +
Sbjct: 1065 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1124
Query: 164 PLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
R GL G TG +GLPG PG SG QGA+ P G RG P
Sbjct: 1125 GER-------GLKGHRGFTGLQGLPGP---PGPSGDQGAS--GPAGPSGPRGPP 1166
Score = 48.1 bits (113), Expect = 8e-06
Identities = 50/161 (31%), Positives = 56/161 (34%), Gaps = 34/161 (21%)
Query: 64 REGSPGVSAQGGPL--EGTPRPAAP-GAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
R G PG+ GP +G P P GA P Q L +R VG P
Sbjct: 940 RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-------------LP 986
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G+ G GL P P AP A+ R P G P PGL+ G
Sbjct: 987 GQRGERGFPGL-PGPSGEPGKQGAPGASGDRGPPG-------------PVGPPGLTGPAG 1032
Query: 181 ATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRGRP 217
G G PG G PGR G G VG P G P
Sbjct: 1033 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1073
Score = 46.2 bits (108), Expect = 3e-05
Identities = 55/183 (30%), Positives = 64/183 (34%), Gaps = 45/183 (24%)
Query: 66 GSPGVSAQGGPLEGTP----RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
G PGVS GP G P +P G A +P + R G G GL PG
Sbjct: 231 GEPGVSGPMGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL----PG 285
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
G GL+ + G GA G +G S PG + + G
Sbjct: 286 VKGHRGYPGLDGAKGEAGAPGV----------KGESGS-------------PGENGSPGP 322
Query: 182 TGGRGLPGRRGLPGRSGLQGA---------AVPP----PVGVPSLRGRPWEALATAATPR 228
G RGLPG RG G +G GA A PP P G P G P T
Sbjct: 323 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 382
Query: 229 RCP 231
R P
Sbjct: 383 RGP 385
Score = 45.1 bits (105), Expect = 7e-05
Identities = 64/199 (32%), Positives = 77/199 (38%), Gaps = 25/199 (12%)
Query: 59 VRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD- 116
V+G + E G+ G GP G+P PA P R + + +G G A ARG+
Sbjct: 1054 VKGDRGETGAVGAPGAPGP-PGSPGPAGPTGKQGDRGEA--GAQGPMGPSGPAGARGIQG 1110
Query: 117 ----RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
R GE G GL+ G G G P +G S P P P
Sbjct: 1111 PQGPRGDKGEAGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGAS--GPAGPSGPRGP-- 1165
Query: 173 PGLSRAGGATGGRGLPGRRGLPG---RSGLQGAAVPP----PVGVPSLRGRPWEALATAA 225
PG G G G+PG G PG RSG G A PP P G P G + A A
Sbjct: 1166 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAG 1225
Query: 226 TPRR----CPLQLLRAGPA 240
R PLQ +RA A
Sbjct: 1226 LGPREKGPDPLQYMRADQA 1244
Score = 38.1 bits (87), Expect = 0.008
Identities = 48/165 (29%), Positives = 53/165 (32%), Gaps = 36/165 (21%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P RG R+G PG GP P PG G + A G D
Sbjct: 146 PGPRG--RDGEPGTPGNPGPPGPPGPPGPPGLG---------------GNFAAQMAGGFD 188
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+A G G + P G RG G A A P+G P PG
Sbjct: 189 EKAGGAQLGVMQGPMGPM-GPRGPPGPAGAPG----PQGFQGN----------PGEPGEP 233
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG----AAVPPPVGVPSLRGRP 217
G G RG PG G PG G G A P G RG P
Sbjct: 234 GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP 278
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 64.7 bits (156), Expect = 8e-11
Identities = 58/168 (34%), Positives = 73/168 (43%), Gaps = 25/168 (14%)
Query: 57 PAVRGCKRE-GSPGVSAQGG-PLE-GTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARAR 113
P + G K E G+PGV + G P E G+P P P P R + G G A AR
Sbjct: 224 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPG--------ERGRTGPAGAAGAR 275
Query: 114 GLDRRA-----PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL 168
G D + PG G + G G +PGA+G G P AR + R P P
Sbjct: 276 GNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAG--PTGARGPEGAQGPRGEPGTPGS-- 331
Query: 169 PPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRG 215
PG + A G G G+PG +G G G+ GA P P G P +G
Sbjct: 332 ----PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQG 375
Score = 55.1 bits (131), Expect = 6e-08
Identities = 66/200 (33%), Positives = 76/200 (38%), Gaps = 51/200 (25%)
Query: 66 GSPGVSA---QGGPLEGTPRPAAPGAAPRPRRQRLRR----------------RRAKVGG 106
G PG++ + GP +G P PA P AP P + +R R G
Sbjct: 387 GEPGIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGN 445
Query: 107 WGCARARGL--DRRAPGEGGRS-----------PGGGLEPS-PGARGAVGAAPAAARHRK 152
G GL + APGE G S PG EP PGARG G A K
Sbjct: 446 RGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK 505
Query: 153 ------PRGRSRRAPQMP--LRVLPPIL--PGLSRAGGATGGRG------LPGRRGLPGR 196
P R P P R P ++ PG A G G G PG RGLPG+
Sbjct: 506 VGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 565
Query: 197 SGLQGAAVPP-PVGVPSLRG 215
G GAA PP P G RG
Sbjct: 566 DGETGAAGPPGPAGPAGERG 585
Score = 51.6 bits (122), Expect = 7e-07
Identities = 57/183 (31%), Positives = 70/183 (38%), Gaps = 13/183 (7%)
Query: 34 ETLGVVVRSCGILLRACRRSLACPAVRGCKREGSPG-VSAQGGPLEGTPRPAAPGAAPRP 92
+TL ++ +LR + + P +G K G PG + GP +G P P P P
Sbjct: 8 QTLVLLTLLVAAVLRCQGQDVRQPGPKGQK--GEPGDIKDIVGP-KGPPGPQGPAGEQGP 64
Query: 93 RRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPS--PGARGAVGAAPAAARH 150
R R G G RG D G P G P PG G A A
Sbjct: 65 RGDR-----GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFD 119
Query: 151 RKPRGRSRRAPQMPLRVLPPI-LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PV 208
K G Q P+ + P PG + A G G +G PG G PG SG G PP P
Sbjct: 120 EKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP 179
Query: 209 GVP 211
G P
Sbjct: 180 GKP 182
Score = 50.8 bits (120), Expect = 1e-06
Identities = 46/143 (32%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G+PG + GP PGA +P + + + G G +G APG G
Sbjct: 750 GAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG-PSGAPGPQGP 808
Query: 126 SPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
+ G + + GA+G GA P AA P G + PP PG S G G
Sbjct: 809 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG-------PPGPPGPSGKDGPKG 861
Query: 184 GRGLPGRRGLPGRSGLQGAAVPP 206
RG G G G GLQG A PP
Sbjct: 862 ARGDSGPPGRAGEPGLQGPAGPP 884
Score = 49.7 bits (117), Expect = 3e-06
Identities = 50/157 (31%), Positives = 58/157 (36%), Gaps = 35/157 (22%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PGEG 123
G PG + G G P PA P R + G G + +GL PGEG
Sbjct: 561 GLPGKDGETGAA-GPPGPAGPAG-----------ERGEQGAPGPSGFQGLPGPPGPPGEG 608
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
G+ G+ GA G VG PRG + G A G G
Sbjct: 609 GKPGDQGVPGEAGAPGLVG----------PRGERGFPGER----------GSPGAQGLQG 648
Query: 184 GRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRGRPWE 219
RGLPG G G G G A PP G P L+G P E
Sbjct: 649 PRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGE 685
Score = 49.7 bits (117), Expect = 3e-06
Identities = 46/157 (29%), Positives = 55/157 (35%), Gaps = 23/157 (14%)
Query: 65 EGSPGVSAQGGPL-----EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA 119
+G PG + G G P P P AP P+ G G ARG +
Sbjct: 773 DGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ--------GPTGVTGPKGARGA-QGP 823
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG 179
PG G G PG+ G G K + R P PG +
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP--------PGRAGEP 875
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G G G PG +G PG G GA PP P G+ RG
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912
Score = 49.3 bits (116), Expect = 4e-06
Identities = 58/177 (32%), Positives = 68/177 (38%), Gaps = 24/177 (13%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
EG+PG G L G P P A + +VG G A + G R APGE G
Sbjct: 707 EGAPGKDGGRG-LTGPIGPPGPAGA--------NGEKGEVGPPGPAGSAGA-RGAPGERG 756
Query: 125 RS----PGG-----GLEPSPGARGAVGAA--PAAARHRKPRGRSRR-APQMPLRVLPPIL 172
+ P G G + PGA+G G A A P+G S PQ P V P
Sbjct: 757 ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGP-- 814
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRR 229
G A G G G PG G G G G PP PS + P A + P R
Sbjct: 815 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGR 871
Score = 48.9 bits (115), Expect = 5e-06
Identities = 57/178 (32%), Positives = 65/178 (36%), Gaps = 27/178 (15%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P RG G PG + G + + P G P Q R + +G G A G
Sbjct: 488 PGARGLT--GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEP 545
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLP--PIL 172
+A GE G GL PG G GAA P A RG + LP P
Sbjct: 546 GKA-GEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP 604
Query: 173 PGLS----------RAG-----GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
PG AG G G RG PG RG PG GLQG P G+P G
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG-----PRGLPGTPG 657
Score = 48.9 bits (115), Expect = 5e-06
Identities = 48/159 (30%), Positives = 58/159 (36%), Gaps = 22/159 (13%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G PG + G + PG P Q L+ R G G +G A G
Sbjct: 614 QGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGA 673
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
+ P GL+ PG RGA G A P+G + G A G GG
Sbjct: 674 QGP-PGLQGMPGERGAAGIA-------GPKGDRGDVGE----------KGPEGAPGKDGG 715
Query: 185 RGLPGRRGLPGRSGLQG----AAVPPPVGVPSLRGRPWE 219
RGL G G PG +G G P P G RG P E
Sbjct: 716 RGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGE 754
Score = 48.9 bits (115), Expect = 5e-06
Identities = 50/157 (31%), Positives = 57/157 (36%), Gaps = 24/157 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG GP + PGA P Q + R G G A +G DR GE G
Sbjct: 651 GLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGER---GAAGIAGPKG-DRGDVGEKGP 706
Query: 126 SPGGGLEPSPGARGAVGA-APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
G + G G +G PA A K V PP G+ G
Sbjct: 707 EGAPGKDGGRGLTGPIGPPGPAGANGEKGE------------VGPP------GPAGSAGA 748
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRGRPWEA 220
RG PG RG G G G A PP G P +G EA
Sbjct: 749 RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEA 785
Score = 48.9 bits (115), Expect = 5e-06
Identities = 55/174 (31%), Positives = 65/174 (37%), Gaps = 33/174 (18%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G+PG S GP P G A P R+ G G A +G DR G
Sbjct: 937 KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG-DRGETGAV 995
Query: 124 GRSPGGGLEPSPGARGAVG----------------AAPAAARH----RKPRGRSRRAPQM 163
G G SPG G G + PA AR + PRG A +
Sbjct: 996 GAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1055
Query: 164 PLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
R GL G TG +GLPG PG SG QGA+ P G RG P
Sbjct: 1056 GER-------GLKGHRGFTGLQGLPGP---PGPSGDQGAS--GPAGPSGPRGPP 1097
Score = 48.1 bits (113), Expect = 8e-06
Identities = 50/161 (31%), Positives = 56/161 (34%), Gaps = 34/161 (21%)
Query: 64 REGSPGVSAQGGPL--EGTPRPAAP-GAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
R G PG+ GP +G P P GA P Q L +R VG P
Sbjct: 871 RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG-------------LP 917
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G+ G GL P P AP A+ R P G P PGL+ G
Sbjct: 918 GQRGERGFPGL-PGPSGEPGKQGAPGASGDRGPPG-------------PVGPPGLTGPAG 963
Query: 181 ATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRGRP 217
G G PG G PGR G G VG P G P
Sbjct: 964 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPP 1004
Score = 46.2 bits (108), Expect = 3e-05
Identities = 55/183 (30%), Positives = 64/183 (34%), Gaps = 45/183 (24%)
Query: 66 GSPGVSAQGGPLEGTP----RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
G PGVS GP G P +P G A +P + R G G GL PG
Sbjct: 162 GEPGVSGPMGP-RGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGL----PG 216
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
G GL+ + G GA G +G S PG + + G
Sbjct: 217 VKGHRGYPGLDGAKGEAGAPGV----------KGESGS-------------PGENGSPGP 253
Query: 182 TGGRGLPGRRGLPGRSGLQGA---------AVPP----PVGVPSLRGRPWEALATAATPR 228
G RGLPG RG G +G GA A PP P G P G P T
Sbjct: 254 MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGA 313
Query: 229 RCP 231
R P
Sbjct: 314 RGP 316
Score = 45.1 bits (105), Expect = 7e-05
Identities = 64/199 (32%), Positives = 77/199 (38%), Gaps = 25/199 (12%)
Query: 59 VRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD- 116
V+G + E G+ G GP G+P PA P R + + +G G A ARG+
Sbjct: 985 VKGDRGETGAVGAPGAPGP-PGSPGPAGPTGKQGDRGEA--GAQGPMGPSGPAGARGIQG 1041
Query: 117 ----RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
R GE G GL+ G G G P +G S P P P
Sbjct: 1042 PQGPRGDKGEAGEPGERGLKGHRGFTGLQGL-PGPPGPSGDQGAS--GPAGPSGPRGP-- 1096
Query: 173 PGLSRAGGATGGRGLPGRRGLPG---RSGLQGAAVPP----PVGVPSLRGRPWEALATAA 225
PG G G G+PG G PG RSG G A PP P G P G + A A
Sbjct: 1097 PGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAG 1156
Query: 226 TPRR----CPLQLLRAGPA 240
R PLQ +RA A
Sbjct: 1157 LGPREKGPDPLQYMRADQA 1175
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 63.5 bits (153), Expect = 2e-10
Identities = 58/170 (34%), Positives = 70/170 (41%), Gaps = 14/170 (8%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRR---RRAKVGGWGCARA 112
P +G + G G+ Q G P APG P + R R +VG G A A
Sbjct: 174 PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGA 233
Query: 113 RGLDRRAPGEGGRSPGGGLEP-----SPGARGAVGAAPAA--ARHRKPRGRSRRAPQMPL 165
RG D G P G P +PG +G +GA A A PRG P +
Sbjct: 234 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVG-LPGLSG 292
Query: 166 RVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
V PP PG + GA G GLPG G PG G +G +P PVG G
Sbjct: 293 PVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRG--IPGPVGAAGATG 340
Score = 56.2 bits (134), Expect = 3e-08
Identities = 55/183 (30%), Positives = 66/183 (36%), Gaps = 22/183 (12%)
Query: 47 LRACRRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG 106
L + + P V G G PG GP+ A G P + G
Sbjct: 305 LTGAKGAAGLPGVAGAP--GLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGE 362
Query: 107 WGCARARGLDRRAPGEGGRSPGG-----------GLEPSPGARGAVGAAPAAARHRKPRG 155
G A +G + EG R P G GL SPG+RG GA A P
Sbjct: 363 PGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGS 422
Query: 156 RSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLR 214
R P + G + G G GL G RGLPG G G A PVG+P +
Sbjct: 423 RGASGPAG--------VRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGID 474
Query: 215 GRP 217
GRP
Sbjct: 475 GRP 477
Score = 53.5 bits (127), Expect = 2e-07
Identities = 60/178 (33%), Positives = 68/178 (38%), Gaps = 29/178 (16%)
Query: 60 RGCKR-EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR-------------LRRRRAKVG 105
RG K +G GV GP+ G PA P P P R R G
Sbjct: 741 RGAKGPKGENGVVGPTGPV-GAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPG 799
Query: 106 GWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQM 163
G + G A EG R P G P G G VGA P A + P G + A
Sbjct: 800 PSGISGPPGPPGPAGKEGLRGPRGDQGPV-GRTGEVGAVGPPGFAGEKGPSGEAGTAG-- 856
Query: 164 PLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGV---PSLRGRP 217
PP PG GA G GLPG RG G G+ GA P P+G+ P RG P
Sbjct: 857 -----PPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPP 909
Score = 51.2 bits (121), Expect = 9e-07
Identities = 64/196 (32%), Positives = 69/196 (35%), Gaps = 40/196 (20%)
Query: 66 GSPGVSAQGGP--------LEGTPRPAA-PGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
G PG+S GP L G A PG A P R VG G ARGL
Sbjct: 286 GLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLV 345
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRK--PRGRSRRAPQMPLRVLPPILPG 174
PG G G + PG+ G G + K P G + A PP PG
Sbjct: 346 GE-PGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAG-------PPGPPG 397
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGVPSLR---GRPWEALATA 224
L RG PG RGLPG G G PP P GV GRP E
Sbjct: 398 L---------RGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGE--PGL 446
Query: 225 ATPRRCPLQLLRAGPA 240
PR P GPA
Sbjct: 447 MGPRGLPGSPGNIGPA 462
Score = 49.3 bits (116), Expect = 4e-06
Identities = 49/161 (30%), Positives = 59/161 (36%), Gaps = 26/161 (16%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG+ + GP+ PG P + K G G A G R APG G
Sbjct: 469 GLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGA-RGAPGPDGN 527
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
+ G + PG +G G G+ + P P P GL G G
Sbjct: 528 N---GAQGPPGPQGVQG------------GKGEQGPPGP-----PGFQGLPGPSGPAGEV 567
Query: 186 GLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAAT 226
G PG RGL G GL P P G RG P E+ A T
Sbjct: 568 GKPGERGLHGEFGL-----PGPAGPRGERGPPGESGAAGPT 603
Score = 48.9 bits (115), Expect = 5e-06
Identities = 55/166 (33%), Positives = 66/166 (39%), Gaps = 18/166 (10%)
Query: 60 RGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRR-RAKVGGWGCARARGL--- 115
RG E P S +G P A P P P + +R + G G GL
Sbjct: 342 RGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGS 401
Query: 116 --DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP---P 170
R PG GR+ G+ PG+RGA G A R P G + R P P + P P
Sbjct: 402 PGSRGLPGADGRA---GVMGPPGSRGASGPAGV----RGPNGDAGR-PGEPGLMGPRGLP 453
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRG 215
PG G G GLPG G PG G GA P +G P +G
Sbjct: 454 GSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKG 499
Score = 47.8 bits (112), Expect = 1e-05
Identities = 48/150 (32%), Positives = 56/150 (37%), Gaps = 17/150 (11%)
Query: 69 GVSAQGGPLEGTPRPAAPGAAPRPRRQRLRR---RRAKVGGWGCARARGLDRRAPGEGGR 125
GV GP+ PGAA P Q + + G G A ARG PG+ G
Sbjct: 85 GVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG-PAGPPGKAGE 143
Query: 126 SPGGGLEPSPGARGAVG--------AAPAAARHRKPRGRS-----RRAPQMPLRVLPPIL 172
G PG RG VG P + RG + + P P P
Sbjct: 144 DGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGA 203
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGA 202
PG + G TG RGLPG RG G G GA
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPAGA 233
Score = 45.4 bits (106), Expect = 5e-05
Identities = 58/180 (32%), Positives = 67/180 (37%), Gaps = 31/180 (17%)
Query: 65 EGSPGVSAQGGP--LEGTPRPAAP-GAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
+G G GP +G P P+ P G +P + L + G G A RG +R PG
Sbjct: 540 QGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLH---GEFGLPGPAGPRG-ERGPPG 595
Query: 122 EGG----------RSPGG-----GLEPSPGARGAVGAAPAAARHRKPRGRSRRA-PQMPL 165
E G R P G G + PG GAVG A + P R P
Sbjct: 596 ESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKG 655
Query: 166 RVLPPIL------PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
P L PG A GA G G PG G G G GAA P G RG P E
Sbjct: 656 EKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAA--GPAGPAGPRGSPGE 713
Score = 45.1 bits (105), Expect = 7e-05
Identities = 57/191 (29%), Positives = 67/191 (35%), Gaps = 12/191 (6%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG + GP GAA +P + R + G G G G
Sbjct: 709 GSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTG------PVGAA 762
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
P G P PG G+ G P R P P + P PG G G R
Sbjct: 763 GPAGPNGP-PGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGP--PGPPGPAGKEGLR 819
Query: 186 GLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLLRAGPALHCPP 245
G G +G GR+G GA PP G +G EA P LL A L P
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPP--GFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPG 877
Query: 246 SVG-RGFVFIA 255
S G RG +A
Sbjct: 878 SRGERGLPGVA 888
Score = 43.9 bits (102), Expect = 1e-04
Identities = 50/177 (28%), Positives = 59/177 (33%), Gaps = 26/177 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPR-----------------PRRQRLRRRRAKVGGWG 108
G PG + GP G P P P P P L R G G
Sbjct: 48 GPPGRDGEDGPT-GPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAG 106
Query: 109 CARARGLDRRA--PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR 166
+G A PGE G++ G G G G + +P R PQ
Sbjct: 107 APGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARG 166
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVP---SLRGRPWE 219
P PGL G G GL G +G PG G++G P G P RG P E
Sbjct: 167 F--PGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGE 221
Score = 43.9 bits (102), Expect = 1e-04
Identities = 54/181 (29%), Positives = 64/181 (35%), Gaps = 27/181 (14%)
Query: 48 RACRRSLACPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG 106
R P G + E G PG S GP G P P P + VG
Sbjct: 573 RGLHGEFGLPGPAGPRGERGPPGESGAAGPT-GPIGSRGPSGPPGPDGNK--GEPGVVGA 629
Query: 107 WGCARARGLDRRAPGEGGRS--PGG-GLEPSPGARGAVG--------AAPAAARHRKPRG 155
G A G PGE G + PGG G + PG RG +G AP A P G
Sbjct: 630 VGTAGPSG-PSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAG 688
Query: 156 RSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLR 214
+ + G + G G RG PG RG G +G G A P G P +
Sbjct: 689 ATGDRGEA----------GAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAK 738
Query: 215 G 215
G
Sbjct: 739 G 739
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/173 (30%), Positives = 61/173 (35%), Gaps = 22/173 (12%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRA----KVGGWGCARARGLDRRA 119
R G PG S GP G P PA PR + R VG G A +G A
Sbjct: 794 RTGPPGPSGISGP-PGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEA 852
Query: 120 --------PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI 171
PG G G+ PG+RG G A +P P P PP
Sbjct: 853 GTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGP--PGARGPPG 910
Query: 172 L---PGLSRAGGATGGRGLPGRRGLPGRSGLQG----AAVPPPVGVPSLRGRP 217
PG++ A G G G PG G PGR G G P +G G P
Sbjct: 911 AVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAP 963
Score = 42.0 bits (97), Expect = 6e-04
Identities = 54/184 (29%), Positives = 64/184 (34%), Gaps = 24/184 (13%)
Query: 54 LACPAVRGCKREGSPGVSA---QGGPLEGTPRPAA---PGAAPRPRRQRLRRRRAKVGGW 107
L P RG G PGV+ + GPL P A PGA P + G
Sbjct: 873 LGLPGSRG--ERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNP 930
Query: 108 GCARARGLDRRAPGEGGRSPGGGLEP--SPGARGAVGAAPAAARHRKPRGRSRRAPQMPL 165
G G D + +G R G + P + GA G G A +H P P
Sbjct: 931 GNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPA 990
Query: 166 RVLPPILP-------GLSRAGGATGGRGLPGRRGLPGRSGLQGAA-------VPPPVGVP 211
+ P P G G G RGLPG +G G GL G A P VG
Sbjct: 991 GAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPA 1050
Query: 212 SLRG 215
RG
Sbjct: 1051 GPRG 1054
Score = 36.2 bits (82), Expect = 0.031
Identities = 45/145 (31%), Positives = 54/145 (37%), Gaps = 23/145 (15%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G PGV GT P+ P P R G G +G ++ PG G
Sbjct: 621 KGEPGVVGA----VGTAGPSGPSGLPGER-----------GAAGIPGGKG-EKGEPGLRG 664
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRA-PQMPLRVLPPILPGLSRAGGATG 183
G + + GA GAVGA P A RG + A P P P PG G G
Sbjct: 665 EIGNPGRDGARGAPGAVGA-PGPAGATGDRGEAGAAGPAGPAG--PRGSPGERGEVGPAG 721
Query: 184 GRGLPGRRGL---PGRSGLQGAAVP 205
G G G PG G +GA P
Sbjct: 722 PNGFAGPAGAAGQPGAKGERGAKGP 746
Score = 35.4 bits (80), Expect = 0.053
Identities = 57/192 (29%), Positives = 67/192 (34%), Gaps = 48/192 (25%)
Query: 66 GSPGVSAQGGPL--------EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDR 117
G+PG GP G P P A PR G G RG D+
Sbjct: 961 GAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPR-----------GPSGPQGIRG-DK 1008
Query: 118 RAPGEGGRS--PG----GGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPL---- 165
PGE G PG GL+ PG G G AP + PRG + P P
Sbjct: 1009 GEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPA--GPSGPAGKDG 1066
Query: 166 RVLPP--ILP-GLSRAGGATGGRGLPGRRGLPGRSGLQGAA-----------VPPPVGVP 211
R P + P G+ G G G PG G PG G+ G P P
Sbjct: 1067 RTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAP 1126
Query: 212 SLRGRPWEALAT 223
SLR + +E AT
Sbjct: 1127 SLRPKDYEVDAT 1138
Score = 35.0 bits (79), Expect = 0.069
Identities = 49/170 (28%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 66 GSPGVSAQGGPL--EGTP-RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
GSPGV+ G +G P PG +P + R +G G A A G
Sbjct: 913 GSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPA 972
Query: 123 GGRSPGGGLEPSP--GARGAVG----AAPAAARHRK-------PRGRSRRAPQMPLRVLP 169
G G PS G GAVG + P R K PRG L+ LP
Sbjct: 973 GKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLP 1032
Query: 170 PIL--------PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVP 211
I PG G G G G G GR+G G P + P
Sbjct: 1033 GIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGP 1082
Score = 33.9 bits (76), Expect = 0.15
Identities = 50/180 (27%), Positives = 59/180 (32%), Gaps = 24/180 (13%)
Query: 95 QRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPR 154
Q L+ + G G RG +R PG GR G PG G G
Sbjct: 23 QSLQEETVRKGPAGDRGPRG-ERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQY 81
Query: 155 -GRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
G+ P+ G G RG PG G PG G QG A P G P
Sbjct: 82 DGKGVGLGPGPM--------------GLMGPRGPPGAAGAPGPQGFQGPAGEP--GEPGQ 125
Query: 214 RGRPWEALATAATPRRC-----PLQLLRAGPALHCPPSVGRGFVFIATLPSRKHLHCADG 268
G P A A P + P + R G P RGF LP K + +G
Sbjct: 126 TG-PAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNG 184
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 61.2 bits (147), Expect = 9e-10
Identities = 65/203 (32%), Positives = 73/203 (35%), Gaps = 25/203 (12%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
R+GSPG G P APGA P VG G + RG A G
Sbjct: 1026 RDGSPGAKGDRGETGPAGPPGAPGAPGAP---------GPVGPAGKSGDRGETGPAGPAG 1076
Query: 124 GRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL---SRA 178
P G P+ G RG G R Q P PP PG S A
Sbjct: 1077 PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPG--PPGSPGEQGPSGA 1134
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLLRAG 238
G G RG PG G PG+ GL G +P P+G P RGR +A P
Sbjct: 1135 SGPAGPRGPPGSAGAPGKDGLNG--LPGPIGPPGPRGRTGDAGPVGPPGPPGP------- 1185
Query: 239 PALHCPPSVGRGFVFIATLPSRK 261
P PPS G F F+ P K
Sbjct: 1186 PGPPGPPSAGFDFSFLPQPPQEK 1208
Score = 57.8 bits (138), Expect = 1e-08
Identities = 63/185 (34%), Positives = 71/185 (38%), Gaps = 37/185 (20%)
Query: 54 LACPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
L P G + E G PG GP P PA P R G G A
Sbjct: 667 LGAPGPSGARGERGFPGERGVQGP----PGPAGP--------------RGANGAPGNDGA 708
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGA-APAAAR-HRKPRGRSRRAPQMPLRVLP- 169
+G D APG G GL+ PG RGA G P R P+G + +R L
Sbjct: 709 KG-DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767
Query: 170 PILP-------------GLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRG 215
PI P G S G TG RG PG RG PG G G A PP G P +G
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKG 827
Query: 216 RPWEA 220
P +A
Sbjct: 828 EPGDA 832
Score = 55.8 bits (133), Expect = 4e-08
Identities = 59/180 (32%), Positives = 67/180 (37%), Gaps = 21/180 (11%)
Query: 57 PAVRGCKR-EGSPGVSAQGGPLEGTPRPAAPGAAPRPRR---QRLRRRRAKVGGWGCARA 112
P ++G + G G GP P +PG P + + L R + G G A A
Sbjct: 262 PGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGA 321
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRG-------RSRRAPQMPL 165
RG D G P G P PG GAVGA A + PRG R P P
Sbjct: 322 RGNDGATGAAGPPGPTGPAGP-PGFPGAVGAKGEAGP-QGPRGSEGPQGVRGEPGPPGPA 379
Query: 166 RVLPPI-------LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRGRP 217
P PG A GA G G PG G G SG QG PP P G G P
Sbjct: 380 GAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAP 439
Score = 52.0 bits (123), Expect = 5e-07
Identities = 55/175 (31%), Positives = 65/175 (37%), Gaps = 24/175 (13%)
Query: 66 GSPGVSAQGGPL--EGTPRPA----APGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA 119
G+ GV+ GP G+P PA +PG A RP L + G G G
Sbjct: 497 GADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG-KTGP 555
Query: 120 PGEGGRSPGGGLEPSPGARGAVGA----APAAARHRKPRGRSRRAPQMPLRVLP------ 169
PG G+ G PGARG G P A + R P P V P
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 615
Query: 170 ------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLRGRP 217
P G + G G G PG +GLPG +G G A P GVP G P
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP 670
Score = 49.7 bits (117), Expect = 3e-06
Identities = 53/167 (31%), Positives = 58/167 (34%), Gaps = 45/167 (26%)
Query: 66 GSPGVSAQGGPLEGTPRPAAP----GAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
G PG S GP G P P G A +P R R G G GL PG
Sbjct: 209 GEPGASGPMGP-RGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGL----PG 263
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
G GL+ + G G G P+G P PG + A G
Sbjct: 264 MKGHRGFSGLDGAKGDAGPAG----------PKGE-------------PGSPGENGAPGQ 300
Query: 182 TGGRGLPGRRGLP---------GRSGLQGAAVPP----PVGVPSLRG 215
G RGLPG RG P G G GAA PP P G P G
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPG 347
Score = 49.7 bits (117), Expect = 3e-06
Identities = 51/166 (30%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD-----RRA 119
EG G + GP T P PG P + G G A RG + +
Sbjct: 466 EGKRGARGEPGP---TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 522
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRK-----PRGRSRRAPQMPLRVLPPILPG 174
PGE GR GL PGA+G G+ + K P G+ R PP PG
Sbjct: 523 PGEAGRPGEAGL---PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPG-------PPGPPG 572
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
G G G G G PG++G +G VP P G G+ EA
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERG--VPGPPGAVGPAGKDGEA 616
Score = 49.7 bits (117), Expect = 3e-06
Identities = 51/164 (31%), Positives = 63/164 (38%), Gaps = 25/164 (15%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
+EG G + GP G P P P P ++ G G A A G PG
Sbjct: 903 KEGGKGPRGETGPA-GRPGEVGPPGPPGPAGEK-----GSPGADGPAGAPG----TPGPQ 952
Query: 124 GRSPGGGLEPSPGARGAVG----AAPAAARHRK-PRGRS-RRAPQMPLRVLPPILPGLSR 177
G + G+ PG RG G P+ ++ P G S R P P+ PGL+
Sbjct: 953 GIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP-----PGLAG 1007
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRGRP 217
G +G G PG G PGR G GA P G P G P
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Score = 48.5 bits (114), Expect = 6e-06
Identities = 54/178 (30%), Positives = 67/178 (37%), Gaps = 41/178 (23%)
Query: 51 RRSLACPAVRGCKRE-GSPGV-SAQGGP-LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGW 107
R + P G K + G+PG +QG P L+G P P P+ R
Sbjct: 697 RGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR----------- 745
Query: 108 GCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG----------AAPAAARHRKPRGRS 157
G A +G D +G R G + P PG GA G A P AR P R
Sbjct: 746 GDAGPKGADGSPGKDGVRGLTGPIGP-PGPAGAPGDKGESGPSGPAGPTGARGA-PGDRG 803
Query: 158 RRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVP 211
P PG + G G G PG +G PG +G +G A PP P G P
Sbjct: 804 EPGP-----------PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 850
Score = 48.1 bits (113), Expect = 8e-06
Identities = 49/157 (31%), Positives = 58/157 (36%), Gaps = 20/157 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG + GP P PA P P R +A V G+ + A GE G+
Sbjct: 545 GSPGPDGKTGP----PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG------AAGEPGK 594
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRS---RRAPQMPLRVLPPILPGLSRAGGAT 182
+ G+ PGA G G A P R Q P P GL G
Sbjct: 595 AGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG--SPGFQGLPGPAGPP 652
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G PG +G+PG G P P G RG P E
Sbjct: 653 GEAGKPGEQGVPGDLG-----APGPSGARGERGFPGE 684
Score = 48.1 bits (113), Expect = 8e-06
Identities = 58/176 (32%), Positives = 65/176 (36%), Gaps = 29/176 (16%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL--DRRAPGE 122
+GSPG G L G P P AP + + G G ARG DR PG
Sbjct: 754 DGSPGKDGVRG-LTGPIGPPGPAGAPGDKGES-----GPSGPAGPTGARGAPGDRGEPGP 807
Query: 123 GGRSPGG-----GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL--PPILPGL 175
G P G G + PGA+G G A A P P P+ + P
Sbjct: 808 PG--PAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 176 SRAG--GATGGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRPWE 219
AG GATG G GR G PG SG G PP P G GRP E
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/148 (33%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G+PG + GP PGA +P + G G A A+G D PG G
Sbjct: 797 GAPGDRGEPGPPGPAGFAGPPGADGQPGAK---------GEPGDAGAKG-DAGPPGPAGP 846
Query: 126 S--PGG-GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
+ PG G +PGA+GA G+A P R P P P PG G
Sbjct: 847 AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP--PGPPGPAGKE 904
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPP-PVG 209
GG+G G G GR G G PP P G
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAG 932
Score = 45.1 bits (105), Expect = 7e-05
Identities = 51/174 (29%), Positives = 60/174 (34%), Gaps = 33/174 (18%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPG------AAPRPRRQRLRRRRAKVGGWGCA 110
P RG G G GP + P APG A P ++ G G
Sbjct: 412 PGARG--PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKR 469
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPP 170
ARG PG G G PG+RG GA A P+G +
Sbjct: 470 GARG----EPGPTGLPGPPGERGGPGSRGFPGADGVAG----PKGPAGERGS-------- 513
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGVPSLRGRP 217
PG + G+ G G PG GLPG GL G+ P P G GRP
Sbjct: 514 --PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP 565
Score = 43.9 bits (102), Expect = 1e-04
Identities = 51/152 (33%), Positives = 57/152 (37%), Gaps = 24/152 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAP-RPRRQRLRRRRAKVGGWGCARARGLD-----RRA 119
G PG G +G+P P AP P Q + +R VG G RG
Sbjct: 923 GPPGPPGPAGE-KGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 981
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRR--APQMPLRVLPPILPGLSR 177
PG+ G S G PG G G A P G S R AP PG
Sbjct: 982 PGKQGPSGASGERGPPGPMGPPGLAG-------PPGESGREGAPGAEGS------PGRDG 1028
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVG 209
+ GA G RG G G PG G GA P PVG
Sbjct: 1029 SPGAKGDRGETGPAGPPGAPGAPGA--PGPVG 1058
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/107 (37%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI--LPGL-- 175
PGE G S G PG G G A + +P R PQ R LP LPG+
Sbjct: 208 PGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ-GARGLPGTAGLPGMKG 266
Query: 176 ----SRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRGRP 217
S GA G G G +G PG G GA P G+P RGRP
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRP 313
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/154 (31%), Positives = 52/154 (33%), Gaps = 17/154 (11%)
Query: 78 EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGA 137
EG P P + P Q G G RG PG G GL PG
Sbjct: 88 EGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRG-PAGPPGRDGIPGQPGLPGPPGP 146
Query: 138 RGAVGAAPAAARHRKPR-----------GRSRRAPQMPLRVLPPILPGLSRAGGATGGRG 186
G G P + P+ G S P P P LPG A G G +G
Sbjct: 147 PGPPGP-PGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSG--PRGLPGPPGAPGPQGFQG 203
Query: 187 LPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
PG G PG SG G PP G P G EA
Sbjct: 204 PPGEPGEPGASGPMGPRGPP--GPPGKNGDDGEA 235
Score = 37.7 bits (86), Expect = 0.011
Identities = 48/152 (31%), Positives = 57/152 (37%), Gaps = 34/152 (22%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G+ Q G L G P P P P G + + G D ++ G G
Sbjct: 130 GRDGIPGQPG-LPGPPGPPGPPGPP-----------GLGGNFAPQLSYGYDEKSTG--GI 175
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
S G + PS G RG G A P+G PP PG A G G R
Sbjct: 176 SVPGPMGPS-GPRGLPGPPGAPG----PQGFQG----------PPGEPGEPGASGPMGPR 220
Query: 186 GLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G PG PG++G G A P G P RG P
Sbjct: 221 GPPGP---PGKNGDDGEAGKP--GRPGERGPP 247
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 60.1 bits (144), Expect = 2e-09
Identities = 53/169 (31%), Positives = 63/169 (37%), Gaps = 16/169 (9%)
Query: 57 PAVRGCKREGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P V G G+ G+ GP +G P P P + G G A G
Sbjct: 275 PGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPG 334
Query: 115 L--DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
L DR PGE G G + G G G+A R P + P P
Sbjct: 335 LLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGP-------- 386
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
PG+ G G GL G+ G+PG GL GA PP P G P GRP
Sbjct: 387 PGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRP 435
Score = 53.1 bits (126), Expect = 2e-07
Identities = 53/158 (33%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G GGP P PG+A P R+ + + G G G+ G+ G
Sbjct: 349 GEQGPQGLGGP------PGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIR----GDQGP 398
Query: 126 SPGGGLEPSPGARGAVGA--APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
S G PG RG GA P + G + R P PG++ A G G
Sbjct: 399 SGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGR----------PGGPGVAGALGQKG 448
Query: 184 GRGLPGRRGLPGRS---GLQGAAVP-PPVGVPSLRGRP 217
GLPG+ GL G S GLQG A P P G+P L+G P
Sbjct: 449 DLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEP 486
Score = 51.2 bits (121), Expect = 9e-07
Identities = 54/166 (32%), Positives = 59/166 (35%), Gaps = 33/166 (19%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD-----RRAP 120
G+PG + GP G P P A P+ V G G A GL A
Sbjct: 246 GAPGDKGESGP-PGVPGPRGEPGAVGPKGP------PGVDGVGVPGAAGLPGPQGPSGAK 298
Query: 121 GEGG-RSPGG----------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP 169
GE G R P G GL G RG G +P Q P
Sbjct: 299 GEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGP----- 353
Query: 170 PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
GL G G GLPGRRG PG G G PP GVP +RG
Sbjct: 354 ---QGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPP--GVPGIRG 394
Score = 50.1 bits (118), Expect = 2e-06
Identities = 57/185 (30%), Positives = 66/185 (35%), Gaps = 26/185 (14%)
Query: 57 PAVRGCKREGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P G G PG GP +G P P P P R + VG G A G
Sbjct: 164 PGPSGITIPGKPGAQGVPGPPGFQGEP---GPQGEPGPPGDRGLKGDNGVGQPGLPGAPG 220
Query: 115 LDRRAPGEGGR-SPGG-------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR 166
APG G P G GL +PG +G G +P + P
Sbjct: 221 -QGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDG 279
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVP---------PPVGVPSL---R 214
V P GL G +G +G PG RG PG G G +P P GVP L R
Sbjct: 280 VGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDR 339
Query: 215 GRPWE 219
G P E
Sbjct: 340 GEPGE 344
Score = 48.5 bits (114), Expect = 6e-06
Identities = 49/160 (30%), Positives = 56/160 (35%), Gaps = 21/160 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
R G PG + GP G P P PG L + G G A G PG
Sbjct: 371 RRGPPGPKGEAGP--GGP-PGVPGIRGDQGPSGLAGKPGVPGERGLPGAHG----PPGPT 423
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
G G PG G GA P R P +PGL G G
Sbjct: 424 GPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSG--------IPGLQGPAGPIG 475
Query: 184 GRGLPGRRGLPGRSGL--QGAAVPP----PVGVPSLRGRP 217
+GLPG +G PG G +G A P P G P + G P
Sbjct: 476 PQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSP 515
Score = 44.3 bits (103), Expect = 1e-04
Identities = 37/102 (36%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRA----PQMPLRVLPPILPGL 175
PG G+ PG G PG G G A P G SR P +P +V PP PGL
Sbjct: 94 PGFPGK-PGMG---KPGLHGQPGPAG-------PPGFSRMGKAGPPGLPGKVGPPGQPGL 142
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G +GL G G PG G G +P G + G P
Sbjct: 143 RGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPP 184
Score = 43.9 bits (102), Expect = 1e-04
Identities = 42/133 (31%), Positives = 51/133 (38%), Gaps = 43/133 (32%)
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAP----------QMPLRVLPP 170
G G R+ GG GA GA G AP ++ +P + P +MPL +LP
Sbjct: 21 GCGPRASSGG-----GAGGAAGYAPV--KYIQPMQKGPVGPPFREGKGQYLEMPLPLLPM 73
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGL-------------------QGAAVPP----- 206
L G G G RG PG G PG+ G+ G A PP
Sbjct: 74 DLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGK 133
Query: 207 --PVGVPSLRGRP 217
P G P LRG P
Sbjct: 134 VGPPGQPGLRGEP 146
Score = 38.5 bits (88), Expect = 0.006
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 19/153 (12%)
Query: 57 PAVRGCKRE----GSPGVSAQGG--PLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
P +RG + G PGV + G G P P P P + GG G A
Sbjct: 390 PGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPG--------FTGRPGGPGVA 441
Query: 111 RARGL--DRRAPGEGG-RSPGG--GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL 165
A G D PG+ G R P G GL+ G G G P P
Sbjct: 442 GALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPG 501
Query: 166 RVLPPILPGLSRAGGATGGRGLPGRRGLPGRSG 198
P PG+ + G TG G PG G PG G
Sbjct: 502 TAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPG 534
Score = 37.0 bits (84), Expect = 0.018
Identities = 53/170 (31%), Positives = 60/170 (35%), Gaps = 25/170 (14%)
Query: 66 GSPGVSAQGGP-LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
G PG G P L G P PA P R + KVG G RG +G
Sbjct: 95 GFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGL 154
Query: 125 RSPGG--GLE-PS-------PGARGAVGAAPAAARHRKPRGRSRRAPQMPLR----VLPP 170
R P G GL PS PGA+G G P P+G L+ V P
Sbjct: 155 RGPPGPPGLPGPSGITIPGKPGAQGVPGP-PGFQGEPGPQGEPGPPGDRGLKGDNGVGQP 213
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
LPG GGA G PG G G P G+P G E+
Sbjct: 214 GLPGAPGQGGAPGP---------PGLPGPAGLGKPGLDGLPGAPGDKGES 254
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/156 (30%), Positives = 60/156 (38%), Gaps = 5/156 (3%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG+ GP+ P PG A + +G G G+ R+ G G
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS-GVPGL 921
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM---PLRVLPPILPGLSRAGGAT 182
GL+ PG G G + P P + P LPG+ G
Sbjct: 922 KGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPK 981
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRGRP 217
G +GLPG G PG SG G PP P G P L G+P
Sbjct: 982 GYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQP 1017
Score = 52.0 bits (123), Expect = 5e-07
Identities = 44/130 (33%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 107 WGCARARGLDRRA-PGEGGRSPGGGLEPSPGARGAVGA-APAAARHRK----------PR 154
+GC+ D GE G GLE PG G G P R +K P+
Sbjct: 30 YGCSPGSKCDCSGIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPK 89
Query: 155 GRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLP------GRRGLPGRSGLQGAAVPP-P 207
G R P +P P LPG+ GA G +G+P G RG PG G G PP P
Sbjct: 90 G-IRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGP 148
Query: 208 VGVPSLRGRP 217
G+P ++G P
Sbjct: 149 PGIPGMKGEP 158
Score = 52.0 bits (123), Expect = 5e-07
Identities = 57/171 (33%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 54 LACPAVRGCKRE-GSPGVSAQGGPLEGTPR----PAAPGAAPRPRRQRLRRRRAKVGGWG 108
L P ++G K E GSPG G L GTP P PG P + R G G
Sbjct: 551 LTFPGMKGDKGELGSPGAPGLPG-LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPG 609
Query: 109 CARARGLDRRAPGE-GGRSPGGGLEPSP-GARGAVGAA--PAAARHRKPRGRSRRAPQMP 164
GL PG G P G P P G +G G A P P+G + P
Sbjct: 610 LP---GL----PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 165 LRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
+ P PG G G GLPG+ GLPG G +G P +G+P G
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPG 713
Score = 51.6 bits (122), Expect = 7e-07
Identities = 48/157 (30%), Positives = 59/157 (37%), Gaps = 17/157 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG+ G P PG +P + + + G G PG G
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIG--------LPGPPGP 714
Query: 126 SPGGGLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G+ PGA G G P P+G A +P PP LPG A G
Sbjct: 715 KGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA--LPGPPGPPGLPGFKGALG 772
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G RG PG G PGR+GL G +P P G G+P
Sbjct: 773 PKGDRGFPGPPGPPGRTGLDG--LPGPKGDVGPNGQP 807
Score = 51.2 bits (121), Expect = 9e-07
Identities = 51/162 (31%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 66 GSPGVSAQGGPLEGTPRPAA-PGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
G PG+S Q G L G P P PG +P + +G G +G++ PG G
Sbjct: 991 GQPGLSGQPG-LPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEG-PPGPSG 1048
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL---------RVLPPILPGL 175
G PG +G G ++ + P +P V P LPGL
Sbjct: 1049 VPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGL 1108
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G GLPG G PG G +G + PP G P L G P
Sbjct: 1109 PGTPGAKGQPGLPGFPGTPGPPGPKGISGPP--GNPGLPGEP 1148
Score = 51.2 bits (121), Expect = 9e-07
Identities = 54/184 (29%), Positives = 72/184 (39%), Gaps = 35/184 (19%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPG-----------AAPRPRRQRLRRRRAKVGGWGCARARG 114
G+PG+ + GP+ G P PG P P Q+ + G G G
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 115 LDRRAPGEGGRS--PGG----------------GLEPSPGARGAVGAAPAAARHRK-PRG 155
L + G+GG PG G++ PG G+ G A + P+G
Sbjct: 1200 LSGQK-GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQG 1258
Query: 156 RSRRAPQMPLRVLPPIL--PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
R + LP PGL GG G +G PG+ GLPG GL+G PP G+
Sbjct: 1259 PPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPP--GLQGN 1316
Query: 214 RGRP 217
GRP
Sbjct: 1317 PGRP 1320
Score = 49.7 bits (117), Expect = 3e-06
Identities = 55/168 (32%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
Query: 56 CPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
C ++G K E G PG+ G L G P P P P PR Q+ G G +G
Sbjct: 40 CSGIKGEKGERGFPGLEGHPG-LPGFPGPEGP---PGPRGQK-----GDDGIPGPPGPKG 90
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRG--RSRRAPQMPLRVLPP 170
+ R PG G GL PG GA G P + RG S P + PP
Sbjct: 91 I-RGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLRGRP 217
+PG+ G+ LPG +G PG G G +P P G+P G P
Sbjct: 150 GIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPP 197
Score = 48.9 bits (115), Expect = 5e-06
Identities = 51/164 (31%), Positives = 61/164 (37%), Gaps = 39/164 (23%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
EG PG GP +G P A PG P G G +G DR PG G
Sbjct: 736 EGPPGPPGFPGP-KGEPGFALPGPPGPP---------GLPGFKGALGPKG-DRGFPGPPG 784
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG----- 179
GL+ PG +G VG P G+ P + PP LPG+ G
Sbjct: 785 PPGRTGLDGLPGPKGDVG----------PNGQ-------PGPMGPPGLPGIGVQGPPGPP 827
Query: 180 ------GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G+PG +G PG GL P G P + G P
Sbjct: 828 GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Score = 48.9 bits (115), Expect = 5e-06
Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 12/162 (7%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P + G K E G PGV GP G+P PA G P Q R G G
Sbjct: 1216 PGLPGPKGEPGFHGFPGVQGPPGP-PGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGP 1274
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--P 170
G PG G G + +PG G G P + P G + L + P
Sbjct: 1275 EG----PPGLPGNGGIKGEKGNPGQPGLPGL-PGLKGDQGPPGLQGNPGRPGLNGMKGDP 1329
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPS 212
LPG+ G G G+PG G G GL G PP + PS
Sbjct: 1330 GLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPS 1371
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 4/154 (2%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G GV GP +P +PG P + + + +G G +G + PG G
Sbjct: 1036 GPQGVEGPPGPSGVPGQPGSPGL-PGQKGDKGDPGISSIGLPGLPGPKG-EPGLPGYPGN 1093
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL-PPILPGLSRAGGATGG 184
G PG G G A + P P P + PP PGL G GG
Sbjct: 1094 PGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGG 1153
Query: 185 RGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRGRP 217
G PG+ G PG G G +P P G G+P
Sbjct: 1154 GGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQP 1187
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/176 (29%), Positives = 64/176 (36%), Gaps = 27/176 (15%)
Query: 65 EGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQR----LRRRRAKVGGWGCARARGL--D 116
+G PG GP + G P P PG + ++ R + K G G GL D
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 117 RRAPGEGGRS-------------PGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM 163
PGE GR P G + P PG +G P + R
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERG--F 375
Query: 164 PLRVLPPILPGLSRAG--GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
P PP LPG A G G G PG RG G G G ++P P G+ G P
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP 431
Score = 42.7 bits (99), Expect = 3e-04
Identities = 51/163 (31%), Positives = 61/163 (37%), Gaps = 20/163 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP-GEGG 124
G PG+ QG P P PG +P + + G GLD P GE G
Sbjct: 814 GLPGIGVQGPP----GPPGIPGPIGQPGLHGIPGEKGDPG------PPGLDVPGPPGERG 863
Query: 125 RSPG-----GGLEP--SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLS 176
SPG G + P SPG G GA+ + P PL + +PGL
Sbjct: 864 -SPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G GLPG G G G G PP P+L G E
Sbjct: 923 GDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Score = 42.0 bits (97), Expect = 6e-04
Identities = 47/163 (28%), Positives = 59/163 (36%), Gaps = 31/163 (19%)
Query: 57 PAVRGCKR-EGSPGVSAQGGP-LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P RG K EG PG+S G P L+G +P APG P G
Sbjct: 402 PGERGQKGDEGPPGISIPGPPGLDG--QPGAPGLPGPP---------GPAGPHIPPSDEI 450
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG G GL+ G +G G G PP PG
Sbjct: 451 CEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISG-------------PPGQPG 497
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L G G G PG++G G++G G P G+P + G P
Sbjct: 498 LPGLPGPPGSLGFPGQKGEKGQAGATG-----PKGLPGIPGAP 535
Score = 41.6 bits (96), Expect = 7e-04
Identities = 51/169 (30%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PGEG 123
G PG+ G L+G P PG P R L + G G G+ + PG
Sbjct: 1294 GQPGLPGLPG-LKGDQGP--PGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1350
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRG----------RSRRAPQMPLRVLPPI-- 171
G GL PG G G + + + G + PQ P + P
Sbjct: 1351 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1410
Query: 172 --------LPGLSRAGGATGGRGLPGR---RGL---PGRSGLQGAAVPP 206
LPG AGG G GLPG+ RGL PG GLQG PP
Sbjct: 1411 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPP 1459
Score = 35.8 bits (81), Expect = 0.040
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P + G K E GS +S+ GP P PG P G G G
Sbjct: 149 PGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLP------------GPTGIPGPIG- 195
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
PG G G PG +G +G + K + P P ++ P
Sbjct: 196 ---PPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP-- 250
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPP--------PVGVPSLRGRP 217
G +GLPG RG PG G++G PP G P RG+P
Sbjct: 251 IDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP 300
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/156 (30%), Positives = 60/156 (38%), Gaps = 5/156 (3%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG+ GP+ P PG A + +G G G+ R+ G G
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS-GVPGL 921
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM---PLRVLPPILPGLSRAGGAT 182
GL+ PG G G + P P + P LPG+ G
Sbjct: 922 KGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPK 981
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRGRP 217
G +GLPG G PG SG G PP P G P L G+P
Sbjct: 982 GYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQP 1017
Score = 54.3 bits (129), Expect = 1e-07
Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 37/182 (20%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPG-----------AAPRPRRQRLRRRRAKVGGWGCARARG 114
G+PG+ + GP+ G P PG P P Q+ + G G G
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 115 LDRRAPGEGGRS--PGG----------------GLEPSPGARGAVGAAPAAARHRK-PRG 155
L + G+GG PG G++ PG G+ G A + P+G
Sbjct: 1200 LSGQK-GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQG 1258
Query: 156 RSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
R P +P PP LPG GG G +G PG+ GLPG GL+G PP G+ G
Sbjct: 1259 PPGR-PGLPGPEGPPGLPG---NGGIKGEKGNPGQPGLPGLPGLKGDQGPP--GLQGNPG 1312
Query: 216 RP 217
RP
Sbjct: 1313 RP 1314
Score = 52.0 bits (123), Expect = 5e-07
Identities = 44/130 (33%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 107 WGCARARGLDRRA-PGEGGRSPGGGLEPSPGARGAVGA-APAAARHRK----------PR 154
+GC+ D GE G GLE PG G G P R +K P+
Sbjct: 30 YGCSPGSKCDCSGIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPK 89
Query: 155 GRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLP------GRRGLPGRSGLQGAAVPP-P 207
G R P +P P LPG+ GA G +G+P G RG PG G G PP P
Sbjct: 90 G-IRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGP 148
Query: 208 VGVPSLRGRP 217
G+P ++G P
Sbjct: 149 PGIPGMKGEP 158
Score = 52.0 bits (123), Expect = 5e-07
Identities = 57/171 (33%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 54 LACPAVRGCKRE-GSPGVSAQGGPLEGTPR----PAAPGAAPRPRRQRLRRRRAKVGGWG 108
L P ++G K E GSPG G L GTP P PG P + R G G
Sbjct: 551 LTFPGMKGDKGELGSPGAPGLPG-LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPG 609
Query: 109 CARARGLDRRAPGE-GGRSPGGGLEPSP-GARGAVGAA--PAAARHRKPRGRSRRAPQMP 164
GL PG G P G P P G +G G A P P+G + P
Sbjct: 610 LP---GL----PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 165 LRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
+ P PG G G GLPG+ GLPG G +G P +G+P G
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPG 713
Score = 51.6 bits (122), Expect = 7e-07
Identities = 48/157 (30%), Positives = 59/157 (37%), Gaps = 17/157 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG+ G P PG +P + + + G G PG G
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIG--------LPGPPGP 714
Query: 126 SPGGGLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G+ PGA G G P P+G A +P PP LPG A G
Sbjct: 715 KGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA--LPGPPGPPGLPGFKGALG 772
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G RG PG G PGR+GL G +P P G G+P
Sbjct: 773 PKGDRGFPGPPGPPGRTGLDG--LPGPKGDVGPNGQP 807
Score = 51.2 bits (121), Expect = 9e-07
Identities = 51/162 (31%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 66 GSPGVSAQGGPLEGTPRPAA-PGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
G PG+S Q G L G P P PG +P + +G G +G++ PG G
Sbjct: 991 GQPGLSGQPG-LPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEG-PPGPSG 1048
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL---------RVLPPILPGL 175
G PG +G G ++ + P +P V P LPGL
Sbjct: 1049 VPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGL 1108
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G GLPG G PG G +G + PP G P L G P
Sbjct: 1109 PGTPGAKGQPGLPGFPGTPGPPGPKGISGPP--GNPGLPGEP 1148
Score = 49.7 bits (117), Expect = 3e-06
Identities = 55/168 (32%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
Query: 56 CPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
C ++G K E G PG+ G L G P P P P PR Q+ G G +G
Sbjct: 40 CSGIKGEKGERGFPGLEGHPG-LPGFPGPEGP---PGPRGQK-----GDDGIPGPPGPKG 90
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRG--RSRRAPQMPLRVLPP 170
+ R PG G GL PG GA G P + RG S P + PP
Sbjct: 91 I-RGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLRGRP 217
+PG+ G+ LPG +G PG G G +P P G+P G P
Sbjct: 150 GIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPP 197
Score = 48.9 bits (115), Expect = 5e-06
Identities = 51/164 (31%), Positives = 61/164 (37%), Gaps = 39/164 (23%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
EG PG GP +G P A PG P G G +G DR PG G
Sbjct: 736 EGPPGPPGFPGP-KGEPGFALPGPPGPP---------GLPGFKGALGPKG-DRGFPGPPG 784
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG----- 179
GL+ PG +G VG P G+ P + PP LPG+ G
Sbjct: 785 PPGRTGLDGLPGPKGDVG----------PNGQ-------PGPMGPPGLPGIGVQGPPGPP 827
Query: 180 ------GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G+PG +G PG GL P G P + G P
Sbjct: 828 GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Score = 47.4 bits (111), Expect = 1e-05
Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 4/154 (2%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G GV GP +P +PG P + + + +G G +G + PG G
Sbjct: 1036 GPQGVEGPPGPSGVPGQPGSPGL-PGQKGDKGDPGISSIGLPGLPGPKG-EPGLPGYPGN 1093
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL-PPILPGLSRAGGATGG 184
G PG G G A + P P P + PP PGL G GG
Sbjct: 1094 PGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGG 1153
Query: 185 RGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRGRP 217
G PG+ G PG G G +P P G G+P
Sbjct: 1154 GGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQP 1187
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/160 (30%), Positives = 58/160 (36%), Gaps = 14/160 (8%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P + G K E G PGV GP G+P PA G P Q R G G
Sbjct: 1216 PGLPGPKGEPGFHGFPGVQGPPGP-PGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGL 1274
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
G + GE G GL PG +G G +P + P L
Sbjct: 1275 PG-NGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGD--------PGL 1325
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPS 212
PG+ G G G+PG G G GL G PP + PS
Sbjct: 1326 PGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPS 1365
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/176 (29%), Positives = 64/176 (36%), Gaps = 27/176 (15%)
Query: 65 EGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQR----LRRRRAKVGGWGCARARGL--D 116
+G PG GP + G P P PG + ++ R + K G G GL D
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 117 RRAPGEGGRS-------------PGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM 163
PGE GR P G + P PG +G P + R
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERG--F 375
Query: 164 PLRVLPPILPGLSRAG--GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
P PP LPG A G G G PG RG G G G ++P P G+ G P
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP 431
Score = 42.7 bits (99), Expect = 3e-04
Identities = 51/163 (31%), Positives = 61/163 (37%), Gaps = 20/163 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP-GEGG 124
G PG+ QG P P PG +P + + G GLD P GE G
Sbjct: 814 GLPGIGVQGPP----GPPGIPGPIGQPGLHGIPGEKGDPG------PPGLDVPGPPGERG 863
Query: 125 RSPG-----GGLEP--SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLS 176
SPG G + P SPG G GA+ + P PL + +PGL
Sbjct: 864 -SPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G GLPG G G G G PP P+L G E
Sbjct: 923 GDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Score = 42.0 bits (97), Expect = 6e-04
Identities = 47/163 (28%), Positives = 59/163 (36%), Gaps = 31/163 (19%)
Query: 57 PAVRGCKR-EGSPGVSAQGGP-LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P RG K EG PG+S G P L+G +P APG P G
Sbjct: 402 PGERGQKGDEGPPGISIPGPPGLDG--QPGAPGLPGPP---------GPAGPHIPPSDEI 450
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG G GL+ G +G G G PP PG
Sbjct: 451 CEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISG-------------PPGQPG 497
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L G G G PG++G G++G G P G+P + G P
Sbjct: 498 LPGLPGPPGSLGFPGQKGEKGQAGATG-----PKGLPGIPGAP 535
Score = 41.6 bits (96), Expect = 7e-04
Identities = 51/169 (30%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PGEG 123
G PG+ G L+G P PG P R L + G G G+ + PG
Sbjct: 1288 GQPGLPGLPG-LKGDQGP--PGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1344
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRG----------RSRRAPQMPLRVLPPI-- 171
G GL PG G G + + + G + PQ P + P
Sbjct: 1345 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1404
Query: 172 --------LPGLSRAGGATGGRGLPGR---RGL---PGRSGLQGAAVPP 206
LPG AGG G GLPG+ RGL PG GLQG PP
Sbjct: 1405 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPP 1453
Score = 35.8 bits (81), Expect = 0.040
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P + G K E GS +S+ GP P PG P G G G
Sbjct: 149 PGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLP------------GPTGIPGPIG- 195
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
PG G G PG +G +G + K + P P ++ P
Sbjct: 196 ---PPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP-- 250
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPP--------PVGVPSLRGRP 217
G +GLPG RG PG G++G PP G P RG+P
Sbjct: 251 IDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP 300
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 57.4 bits (137), Expect = 1e-08
Identities = 48/156 (30%), Positives = 60/156 (38%), Gaps = 5/156 (3%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG+ GP+ P PG A + +G G G+ R+ G G
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRS-GVPGL 921
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM---PLRVLPPILPGLSRAGGAT 182
GL+ PG G G + P P + P LPG+ G
Sbjct: 922 KGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPK 981
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRGRP 217
G +GLPG G PG SG G PP P G P L G+P
Sbjct: 982 GYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQP 1017
Score = 53.9 bits (128), Expect = 1e-07
Identities = 57/178 (32%), Positives = 66/178 (37%), Gaps = 11/178 (6%)
Query: 53 SLACPAVRGCKRE-------GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVG 105
S+ P + G K E G+PG+ G P PGA +P G
Sbjct: 1072 SIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPG 1131
Query: 106 GWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL 165
G + G + PGE G GGG PG G G P P G+ Q
Sbjct: 1132 PKGISGPPG-NPGLPGEPGPVGGGGHPGQPGPPGEKGK-PGQDGIPGPAGQKGEPGQPGF 1189
Query: 166 -RVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLRGRPWEAL 221
PP LPGLS G G G+PG GLPG G G P G P G P AL
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPAL 1247
Score = 52.0 bits (123), Expect = 5e-07
Identities = 44/130 (33%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query: 107 WGCARARGLDRRA-PGEGGRSPGGGLEPSPGARGAVGA-APAAARHRK----------PR 154
+GC+ D GE G GLE PG G G P R +K P+
Sbjct: 30 YGCSPGSKCDCSGIKGEKGERGFPGLEGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPK 89
Query: 155 GRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLP------GRRGLPGRSGLQGAAVPP-P 207
G R P +P P LPG+ GA G +G+P G RG PG G G PP P
Sbjct: 90 G-IRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGP 148
Query: 208 VGVPSLRGRP 217
G+P ++G P
Sbjct: 149 PGIPGMKGEP 158
Score = 52.0 bits (123), Expect = 5e-07
Identities = 57/171 (33%), Positives = 68/171 (39%), Gaps = 17/171 (9%)
Query: 54 LACPAVRGCKRE-GSPGVSAQGGPLEGTPR----PAAPGAAPRPRRQRLRRRRAKVGGWG 108
L P ++G K E GSPG G L GTP P PG P + R G G
Sbjct: 551 LTFPGMKGDKGELGSPGAPGLPG-LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPG 609
Query: 109 CARARGLDRRAPGE-GGRSPGGGLEPSP-GARGAVGAA--PAAARHRKPRGRSRRAPQMP 164
GL PG G P G P P G +G G A P P+G + P
Sbjct: 610 LP---GL----PGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQP 662
Query: 165 LRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
+ P PG G G GLPG+ GLPG G +G P +G+P G
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPG 713
Score = 51.6 bits (122), Expect = 7e-07
Identities = 48/157 (30%), Positives = 59/157 (37%), Gaps = 17/157 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG+ G P PG +P + + + G G PG G
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIG--------LPGPPGP 714
Query: 126 SPGGGLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G+ PGA G G P P+G A +P PP LPG A G
Sbjct: 715 KGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFA--LPGPPGPPGLPGFKGALG 772
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G RG PG G PGR+GL G +P P G G+P
Sbjct: 773 PKGDRGFPGPPGPPGRTGLDG--LPGPKGDVGPNGQP 807
Score = 51.2 bits (121), Expect = 9e-07
Identities = 51/162 (31%), Positives = 65/162 (40%), Gaps = 14/162 (8%)
Query: 66 GSPGVSAQGGPLEGTPRPAA-PGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
G PG+S Q G L G P P PG +P + +G G +G++ PG G
Sbjct: 991 GQPGLSGQPG-LPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEG-PPGPSG 1048
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL---------RVLPPILPGL 175
G PG +G G ++ + P +P V P LPGL
Sbjct: 1049 VPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGL 1108
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G GLPG G PG G +G + PP G P L G P
Sbjct: 1109 PGTPGAKGQPGLPGFPGTPGPPGPKGISGPP--GNPGLPGEP 1148
Score = 51.2 bits (121), Expect = 9e-07
Identities = 55/184 (29%), Positives = 73/184 (39%), Gaps = 38/184 (20%)
Query: 66 GSPGVSAQGGPLEG---TPRPAAPGAAPRPRRQRLRRRRAKVG-----GWGCARARGLDR 117
G+PG+ + GP+ G +P PG +P + + + G G+G GL
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGL-- 1197
Query: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARH-----RKPRG------------RSRRA 160
PG G+ GGL PG G G H + P G +
Sbjct: 1198 --PGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPG 1255
Query: 161 PQMP-----LRVLPPIL--PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
PQ P + LP PGL GG G +G PG+ GLPG GL+G PP G+
Sbjct: 1256 PQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPP--GLQGN 1313
Query: 214 RGRP 217
GRP
Sbjct: 1314 PGRP 1317
Score = 49.7 bits (117), Expect = 3e-06
Identities = 55/168 (32%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
Query: 56 CPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
C ++G K E G PG+ G L G P P P P PR Q+ G G +G
Sbjct: 40 CSGIKGEKGERGFPGLEGHPG-LPGFPGPEGP---PGPRGQK-----GDDGIPGPPGPKG 90
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRG--RSRRAPQMPLRVLPP 170
+ R PG G GL PG GA G P + RG S P + PP
Sbjct: 91 I-RGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPP 149
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLRGRP 217
+PG+ G+ LPG +G PG G G +P P G+P G P
Sbjct: 150 GIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPP 197
Score = 48.9 bits (115), Expect = 5e-06
Identities = 51/164 (31%), Positives = 61/164 (37%), Gaps = 39/164 (23%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
EG PG GP +G P A PG P G G +G DR PG G
Sbjct: 736 EGPPGPPGFPGP-KGEPGFALPGPPGPP---------GLPGFKGALGPKG-DRGFPGPPG 784
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG----- 179
GL+ PG +G VG P G+ P + PP LPG+ G
Sbjct: 785 PPGRTGLDGLPGPKGDVG----------PNGQ-------PGPMGPPGLPGIGVQGPPGPP 827
Query: 180 ------GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G+PG +G PG GL P G P + G P
Sbjct: 828 GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAP 871
Score = 47.4 bits (111), Expect = 1e-05
Identities = 53/162 (32%), Positives = 63/162 (38%), Gaps = 15/162 (9%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P + G K E G PGV GP G+P PA G P Q R G G
Sbjct: 1216 PGLPGPKGEPGFHGFPGVQGPPGP-PGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGP 1274
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--P 170
GL PG GG G + +PG G G P + P G + L + P
Sbjct: 1275 PGL----PGNGGIK---GEKGNPGQPGLPGL-PGLKGDQGPPGLQGNPGRPGLNGMKGDP 1326
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPS 212
LPG+ G G G+PG G G GL G PP + PS
Sbjct: 1327 GLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPS 1368
Score = 43.5 bits (101), Expect = 2e-04
Identities = 52/176 (29%), Positives = 64/176 (36%), Gaps = 27/176 (15%)
Query: 65 EGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQR----LRRRRAKVGGWGCARARGL--D 116
+G PG GP + G P P PG + ++ R + K G G GL D
Sbjct: 260 QGLPGDRGPPGPPGIRGPPGP--PGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLPGD 317
Query: 117 RRAPGEGGRS-------------PGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM 163
PGE GR P G + P PG +G P + R
Sbjct: 318 PGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERG--F 375
Query: 164 PLRVLPPILPGLSRAG--GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
P PP LPG A G G G PG RG G G G ++P P G+ G P
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP 431
Score = 42.7 bits (99), Expect = 3e-04
Identities = 51/163 (31%), Positives = 61/163 (37%), Gaps = 20/163 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP-GEGG 124
G PG+ QG P P PG +P + + G GLD P GE G
Sbjct: 814 GLPGIGVQGPP----GPPGIPGPIGQPGLHGIPGEKGDPG------PPGLDVPGPPGERG 863
Query: 125 RSPG-----GGLEP--SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLS 176
SPG G + P SPG G GA+ + P PL + +PGL
Sbjct: 864 -SPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLK 922
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G GLPG G G G G PP P+L G E
Sbjct: 923 GDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Score = 42.0 bits (97), Expect = 6e-04
Identities = 47/163 (28%), Positives = 59/163 (36%), Gaps = 31/163 (19%)
Query: 57 PAVRGCKR-EGSPGVSAQGGP-LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P RG K EG PG+S G P L+G +P APG P G
Sbjct: 402 PGERGQKGDEGPPGISIPGPPGLDG--QPGAPGLPGPP---------GPAGPHIPPSDEI 450
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG G GL+ G +G G G PP PG
Sbjct: 451 CEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISG-------------PPGQPG 497
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L G G G PG++G G++G G P G+P + G P
Sbjct: 498 LPGLPGPPGSLGFPGQKGEKGQAGATG-----PKGLPGIPGAP 535
Score = 41.6 bits (96), Expect = 7e-04
Identities = 51/169 (30%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PGEG 123
G PG+ G L+G P PG P R L + G G G+ + PG
Sbjct: 1291 GQPGLPGLPG-LKGDQGP--PGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1347
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRG----------RSRRAPQMPLRVLPPI-- 171
G GL PG G G + + + G + PQ P + P
Sbjct: 1348 GPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1407
Query: 172 --------LPGLSRAGGATGGRGLPGR---RGL---PGRSGLQGAAVPP 206
LPG AGG G GLPG+ RGL PG GLQG PP
Sbjct: 1408 PGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGPP 1456
Score = 35.8 bits (81), Expect = 0.040
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P + G K E GS +S+ GP P PG P G G G
Sbjct: 149 PGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLP------------GPTGIPGPIG- 195
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
PG G G PG +G +G + K + P P ++ P
Sbjct: 196 ---PPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRP-- 250
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPP--------PVGVPSLRGRP 217
G +GLPG RG PG G++G PP G P RG+P
Sbjct: 251 IDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKP 300
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 56.6 bits (135), Expect = 2e-08
Identities = 53/164 (32%), Positives = 60/164 (36%), Gaps = 48/164 (29%)
Query: 61 GCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL----- 115
G + +G PG Q GP P PGA P + + R G G RG
Sbjct: 1714 GAREKGEPGDRGQEGPRGPKGDPGLPGA---PGERGIEGFRGPPGPQGDPGVRGPAGEKG 1770
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
DR PG GRS GL+ PGA G G
Sbjct: 1771 DRGPPGLDGRS---GLDGKPGAAGPSGP-------------------------------- 1795
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
GA G G PGR GLPG G QG +P P G P L G+P E
Sbjct: 1796 ---NGAAGKAGDPGRDGLPGLRGEQG--LPGPSGPPGLPGKPGE 1834
Score = 55.8 bits (133), Expect = 4e-08
Identities = 59/184 (32%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 37 GVVVRSCGILLRACRRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR 96
G+ C R CP ++G PG G + P PG P Q
Sbjct: 1228 GLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQ- 1286
Query: 97 LRRRRAKVGGWGCARARGLDRRAPGEGGR--SPGGGLEP-SPGARGAVGAAPAAARHRKP 153
G G A A+G +R PG GR SPG P +PGA G G+ P
Sbjct: 1287 --------GPPGSATAKG-ERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDP 1337
Query: 154 RGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
R R P+ P PG G G GLPGR+G PG SG G P+G P
Sbjct: 1338 GERGPRGPKG-----EPGAPGQVIGG---EGPGLPGRKGDPGPSGPPGPR--GPLGDPGP 1387
Query: 214 RGRP 217
RG P
Sbjct: 1388 RGPP 1391
Score = 50.8 bits (120), Expect = 1e-06
Identities = 49/164 (29%), Positives = 63/164 (38%), Gaps = 15/164 (9%)
Query: 64 REGSPGVSAQGGPLEGTPRPAA------PGAAPRPRRQRLRRRRAKVGGWGCARARGLDR 117
R+G PG+ GP G P P PG + L+ + + G G +G DR
Sbjct: 2074 RDGPPGLPGTPGP-PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKG-DR 2131
Query: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----PPILP 173
PG G G G G G A KP + R P P+ PP P
Sbjct: 2132 GVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAP 2191
Query: 174 GLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GL+ G G +G G +G PG +G G + P G L G P
Sbjct: 2192 GLA---GPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPP 2232
Score = 48.9 bits (115), Expect = 5e-06
Identities = 57/189 (30%), Positives = 76/189 (40%), Gaps = 38/189 (20%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAP-------GAAPRPRRQRLRRRRAKVG 105
P VRG E G PG+ + G L+G P A P G A P R L R + G
Sbjct: 1760 PGVRGPAGEKGDRGPPGLDGRSG-LDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQG 1818
Query: 106 GWGCARARGLDRRAPGEGGRSPGGGLEPSPG------ARGAVGAAPAAARHRKPRGRSRR 159
G + GL + PGE G+ G PG +G G + A+ R + + R
Sbjct: 1819 LPGPSGPPGLPGK-PGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGER 1877
Query: 160 A----------PQMPLRVLPPI-----LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAV 204
P +P V PP +PG + G G G G +GLPG GL+G
Sbjct: 1878 GAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRG--- 1934
Query: 205 PPPVGVPSL 213
P VP++
Sbjct: 1935 -EPGSVPNV 1942
Score = 48.5 bits (114), Expect = 6e-06
Identities = 58/202 (28%), Positives = 68/202 (33%), Gaps = 50/202 (24%)
Query: 59 VRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
V G + G PG GP G P P P P PR A G G RG
Sbjct: 1355 VIGGEGPGLPGRKGDPGP-SGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPP-- 1411
Query: 119 APGEGGRSPGG----GLEPSPGARGAVG-------------------AAPAAARHRKPRG 155
PGEGG +PG GL SPG +G VG P + + PRG
Sbjct: 1412 GPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRG 1471
Query: 156 ----------------------RSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGL 193
+ R P P LPG++ GA G G PG G
Sbjct: 1472 PPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRG--LPGVAGRPGAKGPEGPPGPTGR 1529
Query: 194 PGRSGLQGAAVPPPVGVPSLRG 215
G G G P V P++ G
Sbjct: 1530 QGEKGEPGRPGDPAVVGPAVAG 1551
Score = 47.8 bits (112), Expect = 1e-05
Identities = 59/180 (32%), Positives = 69/180 (38%), Gaps = 26/180 (14%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P +G K G+PG A G L G P P PR ++ RA G G G
Sbjct: 2306 PGAKGEK--GAPGGLA--GDLVGEPGAKGDRGLPGPRGEKGEAGRA--GEPGDPGEDG-Q 2358
Query: 117 RRAPGEGG--RSPGGGLEPSPGARGAVGA-----------APAAAR---HRKPRGR-SRR 159
+ APG G PG G+ SPG G G AP PRG +
Sbjct: 2359 KGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQP 2418
Query: 160 APQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
P + P PG G G G PG G PG SGL+G P VG+P RG E
Sbjct: 2419 GPSGERGLAGP--PGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGE 2476
Score = 46.6 bits (109), Expect = 2e-05
Identities = 53/176 (30%), Positives = 63/176 (35%), Gaps = 28/176 (15%)
Query: 57 PAVRGCKREGSPGVSAQGGPL--EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P RG ++G+PG+ + G EG P P P P VGG G G
Sbjct: 2143 PGPRG--QDGNPGLPGERGMAGPEGKPGLQGPRGPPGP-----------VGGHGDPGPPG 2189
Query: 115 LDRRAPGEGGRSPGGGL----EPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPP 170
A G + P G E P RG G A P PQ
Sbjct: 2190 APGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS------ 2243
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVPSLRGRPWEALATAA 225
PGL G TG G PGR G G+ G +G+ VP G+P G E T A
Sbjct: 2244 --PGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGA 2297
Score = 46.6 bits (109), Expect = 2e-05
Identities = 55/181 (30%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 57 PAVRGCKRE-------GSPGVSAQGGPLEGTPRPAA-PGAAPRPRRQRLRRRRAKVGGWG 108
P +G K E G PG+ GP +G P A PG P + + R + G G
Sbjct: 2559 PGDKGSKGEPGDKGSAGLPGLRGLLGP-QGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVG 2617
Query: 109 CARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLR 166
RGL GE G GL+ G +G G P A H+ G Q
Sbjct: 2618 FMGPRGLK----GERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAP 2673
Query: 167 VLPPIL-----------PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLR 214
++ PG G G RG PG G PG SG G+A PP P G R
Sbjct: 2674 GKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPR 2733
Query: 215 G 215
G
Sbjct: 2734 G 2734
Score = 45.8 bits (107), Expect = 4e-05
Identities = 53/168 (31%), Positives = 60/168 (35%), Gaps = 32/168 (19%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA---RARGLDRRAP 120
R G+PG G L+G+P PG P + R + + G G GL R
Sbjct: 1312 RAGNPGTPGAPG-LKGSP--GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKG 1368
Query: 121 GEGGRSPGGGLEP--SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G P G P PG RG G P A R R P PG
Sbjct: 1369 DPGPSGPPGPRGPLGDPGPRGPPG-LPGTAMKGDKGDRGERGP-----------PGPGEG 1416
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPP---------PVGVPSLRGRP 217
G A G GLP GLPG G QG PP G P L G+P
Sbjct: 1417 GIAPGEPGLP---GLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQP 1461
Score = 45.4 bits (106), Expect = 5e-05
Identities = 53/156 (33%), Positives = 63/156 (40%), Gaps = 30/156 (19%)
Query: 65 EGSPGVSAQGGP---LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
EG PG+ GP + G P PGA G G GL + PG
Sbjct: 2164 EGKPGLQGPRGPPGPVGGHGDPGPPGAP------------GLAGPAGPQGPSGL-KGEPG 2210
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP---PILPGLSRA 178
E G PG GL GA G G P + P+G +P +P +V P PG A
Sbjct: 2211 ETG-PPGRGLTGPTGAVGLPGP-PGPSGLVGPQG----SPGLPGQVGETGKPGAPGRDGA 2264
Query: 179 GGATGGRG---LPGRRGLPGRSGLQGAAVPPPVGVP 211
G G RG +PG GLPG G +G P P G P
Sbjct: 2265 SGKDGDRGSPGVPGSPGLPGPVGPKGE--PGPTGAP 2298
Score = 44.3 bits (103), Expect = 1e-04
Identities = 64/228 (28%), Positives = 80/228 (35%), Gaps = 60/228 (26%)
Query: 60 RGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR-------LRRRRAKVGGWGCARA 112
+G +G+PG+ Q G G P P A P+ R + + G G A +
Sbjct: 1447 KGDSEDGAPGLPGQPGS-PGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGS 1505
Query: 113 RGLDRRAPGEGGRSPGGGLEPS-----------PGARGAVGAAPAAARHRK-------PR 154
RGL A G + P G P+ PG VG A A + K PR
Sbjct: 1506 RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPR 1565
Query: 155 G----RSRRAPQMPLRVLP-------------PILPGLSRAGGATGGRGLPGRRGLPGRS 197
G + R P P VLP PI GL+ G G G PG +G PGR
Sbjct: 1566 GATGVQGERGP--PGLVLPGDPGPKGDPGDRGPI--GLTGRAGPPGDSGPPGEKGDPGRP 1621
Query: 198 GLQGAAVP-------------PPVGVPSLRGRPWEALATAATPRRCPL 232
G G P P G P L G+ E A R P+
Sbjct: 1622 GPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPV 1669
Score = 44.3 bits (103), Expect = 1e-04
Identities = 54/155 (34%), Positives = 58/155 (37%), Gaps = 35/155 (22%)
Query: 57 PAVRGCKRE----------GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG 106
PAV G K E G+ GV + GP G P PG P R +G
Sbjct: 1547 PAVAGPKGEKGDVGPAGPRGATGVQGERGP-PGLVLPGDPGPKGDPGD------RGPIGL 1599
Query: 107 WGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR 166
G A G D PGE G PG PG G VG PRGR +
Sbjct: 1600 TGRAGPPG-DSGPPGEKG-DPG-----RPGPPGPVG----------PRGRDGEVGEKGDE 1642
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG 201
PP PGL G G RG PG RG G G QG
Sbjct: 1643 G-PPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQG 1676
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/172 (30%), Positives = 64/172 (37%), Gaps = 16/172 (9%)
Query: 53 SLACPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCAR 111
S+ P G K + G PGV G P P G RP ++ R G G
Sbjct: 2447 SVGPPGASGLKGDKGDPGVGLPG-PRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERG 2505
Query: 112 ARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRG-RSRRAPQMPLRVLPP 170
+G A +G + + PG RGA G R PRG + P+ P
Sbjct: 2506 EKGDVGSAGLKGDKGDSAVILGPPGPRGAKG----DMGERGPRGLDGDKGPRGDNG--DP 2559
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAA-------VPPPVGVPSLRG 215
G G G GLPG RGL G G GAA P GVP +RG
Sbjct: 2560 GDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRG 2611
Score = 39.7 bits (91), Expect = 0.003
Identities = 49/163 (30%), Positives = 58/163 (35%), Gaps = 24/163 (14%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPG----------AAPRPRRQRLRRR-RAKVGGWGCARA 112
REG PG GP P A G P PR +R R + G G
Sbjct: 2432 REGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGP 2491
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
RGL PG G G S G +G G + PRG + R
Sbjct: 2492 RGLTG-PPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPR------ 2544
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
GL G G G PG +G G G +G+A G+P LRG
Sbjct: 2545 -GLDGDKGPRGDNGDPGDKGSKGEPGDKGSA-----GLPGLRG 2581
Score = 38.9 bits (89), Expect = 0.005
Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 13/139 (9%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG++ G + P PG + P ++ L + G G +G D+ GE G
Sbjct: 2650 GRPGLAGHKGEMG---EPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKG-DQGEKGERGT 2705
Query: 126 SPGGGLEPSPGARGAVG--AAPAAARHRKPRG----RSRRAPQMPLRVLPPILPGLSRAG 179
GG G G+ G P + R P G + R P V P +PG A
Sbjct: 2706 PGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPG---AP 2762
Query: 180 GATGGRGLPGRRGLPGRSG 198
G G +G PG G G G
Sbjct: 2763 GERGEQGRPGPAGPRGEKG 2781
Score = 38.5 bits (88), Expect = 0.006
Identities = 42/155 (27%), Positives = 53/155 (34%), Gaps = 20/155 (12%)
Query: 63 KREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
+R G G S + GP P G P + L+ R G G +R PG
Sbjct: 1976 RRRGPKGDSGEQGP------PGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGP 2029
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G + G PG G G A R P R R + G G
Sbjct: 2030 SGLAGEPGKPGIPGLPGRAGGVGEAGR---PGERGERGEK-----------GERGEQGRD 2075
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G GLPG G PG G + + P G+ +G P
Sbjct: 2076 GPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPP 2110
Score = 38.1 bits (87), Expect = 0.008
Identities = 52/169 (30%), Positives = 61/169 (36%), Gaps = 24/169 (14%)
Query: 60 RGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA 119
RG K G GV G L+G G A P R L + ++G G G A
Sbjct: 2622 RGLK--GERGVKGACG-LDG--EKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSG----A 2672
Query: 120 PG-EGGRSPGG--GLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPLRVLPPI 171
PG EG P G G + PG +G G P P G A PP
Sbjct: 2673 PGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAG-------PPG 2725
Query: 172 LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
PG G G +G G RG PG + VP G +GRP A
Sbjct: 2726 PPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPA 2774
Score = 37.4 bits (85), Expect = 0.014
Identities = 47/163 (28%), Positives = 60/163 (36%), Gaps = 39/163 (23%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPR-----------PAAPGAAPRPRRQRLRRRRAKVG 105
P +G K G PGV G P P P APG P + R ++G
Sbjct: 2362 PGPKGFK--GDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTG---PRGEMG 2416
Query: 106 GWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL 165
G + RGL EG P G PG G+VG P A+ + +G
Sbjct: 2417 QPGPSGERGLAGPPGREGIPGPLG----PPGPPGSVGP-PGASGLKGDKGD--------- 2462
Query: 166 RVLPPILPGLSRAG--GATGGRGLPGRRGLPGRSGLQGAAVPP 206
PG+ G G G G+ G G PG+ G +G PP
Sbjct: 2463 -------PGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPP 2498
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 56.2 bits (134), Expect = 3e-08
Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 16/154 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG + + GP + G+ RQ + + G G APG+ G
Sbjct: 1217 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG----------APGKTGP 1266
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G PG G G + + +P + P P V PP LPGL GA G +
Sbjct: 1267 VGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP--VGPPGLPGLRGDAGAKGEK 1324
Query: 186 GLPGRRGLPGRSGLQG----AAVPPPVGVPSLRG 215
G PG GL G G QG +P P G P +G
Sbjct: 1325 GHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1358
Score = 55.5 bits (132), Expect = 5e-08
Identities = 51/164 (31%), Positives = 63/164 (38%), Gaps = 24/164 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + + GP+ P PG P Q L K G G D PG G+
Sbjct: 842 GPQGAAGETGPMGERGHPGPPGP---PGEQGLPGTAGKEGTKG-------DPGPPGAPGK 891
Query: 126 SPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLR--------VLPPILPGL 175
GL PG RG G A P + P G A R + PP PG
Sbjct: 892 DGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGP 951
Query: 176 SRAGGATGGRGLPGRR---GLPGRSGLQG-AAVPPPVGVPSLRG 215
GA G +G+PG + G GR G+QG +P P G P + G
Sbjct: 952 QGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAG 995
Score = 47.8 bits (112), Expect = 1e-05
Identities = 53/177 (29%), Positives = 60/177 (33%), Gaps = 37/177 (20%)
Query: 64 REGSPGVSAQGGPL-----EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
+ G+ G S GP G P P P P P+ G G GL
Sbjct: 771 KSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPK-----------GPPGPPGKDGLPGH 819
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL--RVLP------- 169
PG+ G G PG G VG AA R P P + LP
Sbjct: 820 -PGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEG 878
Query: 170 ----PILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRG 215
P PG G G RG PG RGLPG +G G + P P G P RG
Sbjct: 879 TKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 935
Score = 47.0 bits (110), Expect = 2e-05
Identities = 46/151 (30%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G+ + GP G P P P P +R G G +G PG G+
Sbjct: 512 GPRGLPGESGP-RGLLGPKGPPGIPGP--PGVRGMDGPQGPKGSLGPQG----EPGPPGQ 564
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G + PG +GA+G P G + PQ PGL G+ G
Sbjct: 565 QGTPGTQGLPGPQGAIG----------PHGE--KGPQGK--------PGLPGMPGSDGPP 604
Query: 186 GLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G PG+ G PG G QG + P P+G P RG
Sbjct: 605 GHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 635
Score = 44.3 bits (103), Expect = 1e-04
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 19/157 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAP 120
G G + GGP+ RP G + + + +G G +G P
Sbjct: 932 GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 991
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLSRAG 179
G G G PG +G G + P P + P+ PG + A
Sbjct: 992 GVAGEDGDKGEVGDPGQKGTKG------------NKGEHGPPGPPGPIGPVGQPGAAGAD 1039
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G G RG G G G G +G PP P+G+ L G
Sbjct: 1040 GEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPG 1076
Score = 43.9 bits (102), Expect = 1e-04
Identities = 47/146 (32%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G PG + Q GP P P P P LR G G GL PGE
Sbjct: 1290 QQGRPGATGQAGP----PGPVGPPGLPG-----LRGDAGAKGEKGHPGLIGLIG-PPGEQ 1339
Query: 124 GRSPGGGL---EPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G GL + SPG +G +G P A+ P G PP LPG + G
Sbjct: 1340 GEKGDRGLPGPQGSPGQKGEMGI-PGASGPIGPGG-------------PPGLPGPAGPKG 1385
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPP 206
A G G G +G G G G PP
Sbjct: 1386 AKGATGPGGPKGEKGVQGPPGHPGPP 1411
Score = 42.4 bits (98), Expect = 4e-04
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 28/169 (16%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
+EG PG GP P P P PR G G RGL
Sbjct: 609 KEGPPGTKGNQGP----SGPQGPLGYPGPR-----------GVKGVDGIRGLK------- 646
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-RVLPPILPGLSRAGGAT 182
G G + PG +G +G P R P+ P R P PG G
Sbjct: 647 GHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEK 706
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCP 231
G G+PG G PGR G +G+ +G P G E A + + P
Sbjct: 707 GKLGVPGLPGYPGRQGPKGS-----LGFPGFPGASGEKGARGLSGKSGP 750
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/164 (29%), Positives = 56/164 (34%), Gaps = 18/164 (10%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P +G K +G G GP+ +P A GA P + G G A+G
Sbjct: 1006 PGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGAR---------GPQGHFGAKG- 1055
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
D G G GL+ PG G G P R P P P P
Sbjct: 1056 DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP- 1114
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G G PG +G PG SG G P GV RG E
Sbjct: 1115 ----GGVGNLGPPGEKGEPGESGSPGIQGEP--GVKGPRGERGE 1152
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/177 (29%), Positives = 61/177 (34%), Gaps = 28/177 (15%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR----LRRRRAKVGGWGCARARGLDRRAP 120
+G PG S + G G P P P PR + GG G G ++ P
Sbjct: 1072 QGLPGPSGEKGET-GDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG-EKGEP 1129
Query: 121 GEGGRSPGGGLEPS-PGARGAVGAAPAAARHRKPRGRSRRAPQ-------------MPLR 166
GE G SPG EP G RG G + + +P + P P
Sbjct: 1130 GESG-SPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD 1188
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGVPSLRGR 216
PP G GA G RG G G PG G G PP P G P GR
Sbjct: 1189 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR 1245
Score = 37.0 bits (84), Expect = 0.018
Identities = 49/172 (28%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 60 RGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
RG K E G P V G +EG P P P P ++ VG
Sbjct: 293 RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGP--PGIQGNPGPVGD------------ 338
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR------VLPPIL 172
PGE G GL S GA G G + R G + P + + +L
Sbjct: 339 -PGERGPPGRAGLPGSDGAPGPPGTS-LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQAR 396
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAA----VPPPVGVPSLRGRPWEA 220
L G G G PG G PG GL+G + P G L G P +A
Sbjct: 397 LALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA 448
Score = 37.0 bits (84), Expect = 0.018
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 12/131 (9%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
+PG G S G + G +G G A GR RA R +P PG+
Sbjct: 420 SPGLKGESGDLGPQGPRGPQGLTGPPGKA-------GRRGRAGADGARGMPGD-PGVKGD 471
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLL--R 236
G G GLPG +G G +G QG +P P G RG E P LL +
Sbjct: 472 RGFDGLPGLPGEKGHRGDTGAQG--LPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPK 529
Query: 237 AGPALHCPPSV 247
P + PP V
Sbjct: 530 GPPGIPGPPGV 540
Score = 33.9 bits (76), Expect = 0.15
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 65 EGSPGVSAQGGPL--EGTP-RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
+G PG GP +G P +PG P + R R + G G G PG
Sbjct: 1111 QGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG----PPG 1166
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSRAG 179
G + G + +PG G G P PRG+ P P PG +
Sbjct: 1167 PKGPTGDDGPKGNPGPVGFPGD-PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN 1225
Query: 180 GATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRG 215
G G G G G PG G QG P +G P G
Sbjct: 1226 GPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1265
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 56.2 bits (134), Expect = 3e-08
Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 16/154 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG + + GP + G+ RQ + + G G APG+ G
Sbjct: 1196 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG----------APGKTGP 1245
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G PG G G + + +P + P P V PP LPGL GA G +
Sbjct: 1246 VGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP--VGPPGLPGLRGDAGAKGEK 1303
Query: 186 GLPGRRGLPGRSGLQG----AAVPPPVGVPSLRG 215
G PG GL G G QG +P P G P +G
Sbjct: 1304 GHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1337
Score = 55.5 bits (132), Expect = 5e-08
Identities = 51/164 (31%), Positives = 63/164 (38%), Gaps = 24/164 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + + GP+ P PG P Q L K G G D PG G+
Sbjct: 821 GPQGAAGETGPMGERGHPGPPGP---PGEQGLPGTAGKEGTKG-------DPGPPGAPGK 870
Query: 126 SPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLR--------VLPPILPGL 175
GL PG RG G A P + P G A R + PP PG
Sbjct: 871 DGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGP 930
Query: 176 SRAGGATGGRGLPGRR---GLPGRSGLQG-AAVPPPVGVPSLRG 215
GA G +G+PG + G GR G+QG +P P G P + G
Sbjct: 931 QGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAG 974
Score = 47.8 bits (112), Expect = 1e-05
Identities = 53/177 (29%), Positives = 60/177 (33%), Gaps = 37/177 (20%)
Query: 64 REGSPGVSAQGGPL-----EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
+ G+ G S GP G P P P P P+ G G GL
Sbjct: 750 KSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPK-----------GPPGPPGKDGLPGH 798
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL--RVLP------- 169
PG+ G G PG G VG AA R P P + LP
Sbjct: 799 -PGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEG 857
Query: 170 ----PILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRG 215
P PG G G RG PG RGLPG +G G + P P G P RG
Sbjct: 858 TKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 914
Score = 47.0 bits (110), Expect = 2e-05
Identities = 46/151 (30%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G+ + GP G P P P P +R G G +G PG G+
Sbjct: 491 GPRGLPGESGP-RGLLGPKGPPGIPGP--PGVRGMDGPQGPKGSLGPQG----EPGPPGQ 543
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G + PG +GA+G P G + PQ PGL G+ G
Sbjct: 544 QGTPGTQGLPGPQGAIG----------PHGE--KGPQGK--------PGLPGMPGSDGPP 583
Query: 186 GLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G PG+ G PG G QG + P P+G P RG
Sbjct: 584 GHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 614
Score = 44.3 bits (103), Expect = 1e-04
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 19/157 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAP 120
G G + GGP+ RP G + + + +G G +G P
Sbjct: 911 GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 970
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLSRAG 179
G G G PG +G G + P P + P+ PG + A
Sbjct: 971 GVAGEDGDKGEVGDPGQKGTKG------------NKGEHGPPGPPGPIGPVGQPGAAGAD 1018
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G G RG G G G G +G PP P+G+ L G
Sbjct: 1019 GEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPG 1055
Score = 43.9 bits (102), Expect = 1e-04
Identities = 47/146 (32%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G PG + Q GP P P P P LR G G GL PGE
Sbjct: 1269 QQGRPGATGQAGP----PGPVGPPGLPG-----LRGDAGAKGEKGHPGLIGLIG-PPGEQ 1318
Query: 124 GRSPGGGL---EPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G GL + SPG +G +G P A+ P G PP LPG + G
Sbjct: 1319 GEKGDRGLPGPQGSPGQKGEMGI-PGASGPIGPGG-------------PPGLPGPAGPKG 1364
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPP 206
A G G G +G G G G PP
Sbjct: 1365 AKGATGPGGPKGEKGVQGPPGHPGPP 1390
Score = 42.4 bits (98), Expect = 4e-04
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 28/169 (16%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
+EG PG GP P P P PR G G RGL
Sbjct: 588 KEGPPGTKGNQGP----SGPQGPLGYPGPR-----------GVKGVDGIRGLK------- 625
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-RVLPPILPGLSRAGGAT 182
G G + PG +G +G P R P+ P R P PG G
Sbjct: 626 GHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEK 685
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCP 231
G G+PG G PGR G +G+ +G P G E A + + P
Sbjct: 686 GKLGVPGLPGYPGRQGPKGS-----LGFPGFPGASGEKGARGLSGKSGP 729
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/164 (29%), Positives = 56/164 (34%), Gaps = 18/164 (10%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P +G K +G G GP+ +P A GA P + G G A+G
Sbjct: 985 PGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGAR---------GPQGHFGAKG- 1034
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
D G G GL+ PG G G P R P P P P
Sbjct: 1035 DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP- 1093
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G G PG +G PG SG G P GV RG E
Sbjct: 1094 ----GGVGNLGPPGEKGEPGESGSPGIQGEP--GVKGPRGERGE 1131
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/177 (29%), Positives = 61/177 (34%), Gaps = 28/177 (15%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR----LRRRRAKVGGWGCARARGLDRRAP 120
+G PG S + G G P P P PR + GG G G ++ P
Sbjct: 1051 QGLPGPSGEKGET-GDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG-EKGEP 1108
Query: 121 GEGGRSPGGGLEPS-PGARGAVGAAPAAARHRKPRGRSRRAPQ-------------MPLR 166
GE G SPG EP G RG G + + +P + P P
Sbjct: 1109 GESG-SPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD 1167
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGVPSLRGR 216
PP G GA G RG G G PG G G PP P G P GR
Sbjct: 1168 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR 1224
Score = 38.1 bits (87), Expect = 0.008
Identities = 51/180 (28%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 52 RSLACPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
+S A RG K E G P V G +EG P P P P ++ VG
Sbjct: 264 QSQAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGP--PGIQGNPGPVGD---- 317
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR---- 166
PGE G GL S GA G G + R G + P + +
Sbjct: 318 ---------PGERGPPGRAGLPGSDGAPGPPGTS-LMLPFRFGSGGGDKGPVVAAQEAQA 367
Query: 167 --VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAA----VPPPVGVPSLRGRPWEA 220
+L L G G G PG G PG GL+G + P G L G P +A
Sbjct: 368 QAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA 427
Score = 37.0 bits (84), Expect = 0.018
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 12/131 (9%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
+PG G S G + G +G G A GR RA R +P PG+
Sbjct: 399 SPGLKGESGDLGPQGPRGPQGLTGPPGKA-------GRRGRAGADGARGMPGD-PGVKGD 450
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLL--R 236
G G GLPG +G G +G QG +P P G RG E P LL +
Sbjct: 451 RGFDGLPGLPGEKGHRGDTGAQG--LPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPK 508
Query: 237 AGPALHCPPSV 247
P + PP V
Sbjct: 509 GPPGIPGPPGV 519
Score = 34.3 bits (77), Expect = 0.12
Identities = 38/143 (26%), Positives = 51/143 (35%), Gaps = 15/143 (10%)
Query: 68 PGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSP 127
PGV A E G RP+ Q+ R + R ++ + P
Sbjct: 212 PGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGP 271
Query: 128 GGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGL 187
G G +G P G P+ P ++ P PG+ G G G
Sbjct: 272 RG----LKGEKGEPAVLEPGMLVEGPPG-----PEGPAGLIGP--PGIQ---GNPGPVGD 317
Query: 188 PGRRGLPGRSGLQGA-AVPPPVG 209
PG RG PGR+GL G+ P P G
Sbjct: 318 PGERGPPGRAGLPGSDGAPGPPG 340
Score = 33.9 bits (76), Expect = 0.15
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 65 EGSPGVSAQGGPL--EGTP-RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
+G PG GP +G P +PG P + R R + G G G PG
Sbjct: 1090 QGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG----PPG 1145
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSRAG 179
G + G + +PG G G P PRG+ P P PG +
Sbjct: 1146 PKGPTGDDGPKGNPGPVGFPGD-PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN 1204
Query: 180 GATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRG 215
G G G G G PG G QG P +G P G
Sbjct: 1205 GPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1244
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 56.2 bits (134), Expect = 3e-08
Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 16/154 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG + + GP + G+ RQ + + G G APG+ G
Sbjct: 1303 GSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIG----------APGKTGP 1352
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G PG G G + + +P + P P V PP LPGL GA G +
Sbjct: 1353 VGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGP--VGPPGLPGLRGDAGAKGEK 1410
Query: 186 GLPGRRGLPGRSGLQG----AAVPPPVGVPSLRG 215
G PG GL G G QG +P P G P +G
Sbjct: 1411 GHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1444
Score = 55.5 bits (132), Expect = 5e-08
Identities = 51/164 (31%), Positives = 63/164 (38%), Gaps = 24/164 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + + GP+ P PG P Q L K G G D PG G+
Sbjct: 928 GPQGAAGETGPMGERGHPGPPGP---PGEQGLPGTAGKEGTKG-------DPGPPGAPGK 977
Query: 126 SPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLR--------VLPPILPGL 175
GL PG RG G A P + P G A R + PP PG
Sbjct: 978 DGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGP 1037
Query: 176 SRAGGATGGRGLPGRR---GLPGRSGLQG-AAVPPPVGVPSLRG 215
GA G +G+PG + G GR G+QG +P P G P + G
Sbjct: 1038 QGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAG 1081
Score = 47.8 bits (112), Expect = 1e-05
Identities = 53/177 (29%), Positives = 60/177 (33%), Gaps = 37/177 (20%)
Query: 64 REGSPGVSAQGGPL-----EGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
+ G+ G S GP G P P P P P+ G G GL
Sbjct: 857 KSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPK-----------GPPGPPGKDGLPGH 905
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL--RVLP------- 169
PG+ G G PG G VG AA R P P + LP
Sbjct: 906 -PGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEG 964
Query: 170 ----PILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRG 215
P PG G G RG PG RGLPG +G G + P P G P RG
Sbjct: 965 TKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERG 1021
Score = 47.0 bits (110), Expect = 2e-05
Identities = 46/151 (30%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G+ + GP G P P P P +R G G +G PG G+
Sbjct: 598 GPRGLPGESGP-RGLLGPKGPPGIPGP--PGVRGMDGPQGPKGSLGPQG----EPGPPGQ 650
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
G + PG +GA+G P G + PQ PGL G+ G
Sbjct: 651 QGTPGTQGLPGPQGAIG----------PHGE--KGPQGK--------PGLPGMPGSDGPP 690
Query: 186 GLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G PG+ G PG G QG + P P+G P RG
Sbjct: 691 GHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG 721
Score = 44.3 bits (103), Expect = 1e-04
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 19/157 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAP 120
G G + GGP+ RP G + + + +G G +G P
Sbjct: 1018 GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 1077
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPI-LPGLSRAG 179
G G G PG +G G + P P + P+ PG + A
Sbjct: 1078 GVAGEDGDKGEVGDPGQKGTKG------------NKGEHGPPGPPGPIGPVGQPGAAGAD 1125
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G G RG G G G G +G PP P+G+ L G
Sbjct: 1126 GEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPG 1162
Score = 43.9 bits (102), Expect = 1e-04
Identities = 47/146 (32%), Positives = 56/146 (38%), Gaps = 27/146 (18%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G PG + Q GP P P P P LR G G GL PGE
Sbjct: 1376 QQGRPGATGQAGP----PGPVGPPGLPG-----LRGDAGAKGEKGHPGLIGLIG-PPGEQ 1425
Query: 124 GRSPGGGL---EPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G GL + SPG +G +G P A+ P G PP LPG + G
Sbjct: 1426 GEKGDRGLPGPQGSPGQKGEMGI-PGASGPIGPGG-------------PPGLPGPAGPKG 1471
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPP 206
A G G G +G G G G PP
Sbjct: 1472 AKGATGPGGPKGEKGVQGPPGHPGPP 1497
Score = 42.4 bits (98), Expect = 4e-04
Identities = 47/169 (27%), Positives = 58/169 (34%), Gaps = 28/169 (16%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
+EG PG GP P P P PR G G RGL
Sbjct: 695 KEGPPGTKGNQGP----SGPQGPLGYPGPR-----------GVKGVDGIRGLK------- 732
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-RVLPPILPGLSRAGGAT 182
G G + PG +G +G P R P+ P R P PG G
Sbjct: 733 GHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEK 792
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCP 231
G G+PG G PGR G +G+ +G P G E A + + P
Sbjct: 793 GKLGVPGLPGYPGRQGPKGS-----LGFPGFPGASGEKGARGLSGKSGP 836
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/164 (29%), Positives = 56/164 (34%), Gaps = 18/164 (10%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P +G K +G G GP+ +P A GA P + G G A+G
Sbjct: 1092 PGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGAR---------GPQGHFGAKG- 1141
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
D G G GL+ PG G G P R P P P P
Sbjct: 1142 DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP- 1200
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G G PG +G PG SG G P GV RG E
Sbjct: 1201 ----GGVGNLGPPGEKGEPGESGSPGIQGEP--GVKGPRGERGE 1238
Score = 39.3 bits (90), Expect = 0.004
Identities = 52/177 (29%), Positives = 61/177 (34%), Gaps = 28/177 (15%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR----LRRRRAKVGGWGCARARGLDRRAP 120
+G PG S + G G P P P PR + GG G G ++ P
Sbjct: 1158 QGLPGPSGEKGET-GDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPG-EKGEP 1215
Query: 121 GEGGRSPGGGLEPS-PGARGAVGAAPAAARHRKPRGRSRRAPQ-------------MPLR 166
GE G SPG EP G RG G + + +P + P P
Sbjct: 1216 GESG-SPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGD 1274
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGVPSLRGR 216
PP G GA G RG G G PG G G PP P G P GR
Sbjct: 1275 PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR 1331
Score = 37.0 bits (84), Expect = 0.018
Identities = 49/172 (28%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 60 RGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
RG K E G P V G +EG P P P P ++ VG
Sbjct: 379 RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGP--PGIQGNPGPVGD------------ 424
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR------VLPPIL 172
PGE G GL S GA G G + R G + P + + +L
Sbjct: 425 -PGERGPPGRAGLPGSDGAPGPPGTS-LMLPFRFGSGGGDKGPVVAAQEAQAQAILQQAR 482
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAA----VPPPVGVPSLRGRPWEA 220
L G G G PG G PG GL+G + P G L G P +A
Sbjct: 483 LALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA 534
Score = 37.0 bits (84), Expect = 0.018
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 12/131 (9%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
+PG G S G + G +G G A GR RA R +P PG+
Sbjct: 506 SPGLKGESGDLGPQGPRGPQGLTGPPGKA-------GRRGRAGADGARGMPGD-PGVKGD 557
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCPLQLL--R 236
G G GLPG +G G +G QG +P P G RG E P LL +
Sbjct: 558 RGFDGLPGLPGEKGHRGDTGAQG--LPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPK 615
Query: 237 AGPALHCPPSV 247
P + PP V
Sbjct: 616 GPPGIPGPPGV 626
Score = 33.9 bits (76), Expect = 0.15
Identities = 45/160 (28%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 65 EGSPGVSAQGGPL--EGTP-RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
+G PG GP +G P +PG P + R R + G G G PG
Sbjct: 1197 QGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPG----PPG 1252
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSRAG 179
G + G + +PG G G P PRG+ P P PG +
Sbjct: 1253 PKGPTGDDGPKGNPGPVGFPGD-PGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGEN 1311
Query: 180 GATGGRGLPGRRGLPGRSGLQGA----AVPPPVGVPSLRG 215
G G G G G PG G QG P +G P G
Sbjct: 1312 GPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTG 1351
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 56.2 bits (134), Expect = 3e-08
Identities = 59/187 (31%), Positives = 72/187 (38%), Gaps = 39/187 (20%)
Query: 59 VRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-- 115
++G K E G G G + T P G +P Q L G G RGL
Sbjct: 940 IQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKPGLQGLPGSTGDRGLPGEPGLRGLQG 999
Query: 116 DRRAPGEGGRS--PG----GGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP 169
D PGE G PG GL+ PGA+G VG A + +P R
Sbjct: 1000 DVGPPGEMGMEGPPGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGE----------- 1048
Query: 170 PILPGLSRAGGATGGRGLPGRRGLPGRSGLQG----------------AAVPPP---VGV 210
P PG G G +G+PG RGLPG G +G +P P VG+
Sbjct: 1049 PGAPGEEGLQGKDGLKGVPGGRGLPGEDGEKGEMGLPGIIGPLGRSGQTGLPGPEGIVGI 1108
Query: 211 PSLRGRP 217
P RGRP
Sbjct: 1109 PGQRGRP 1115
Score = 49.7 bits (117), Expect = 3e-06
Identities = 51/162 (31%), Positives = 63/162 (38%), Gaps = 25/162 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + GP+ PGA + VG G A G + PGE G
Sbjct: 1201 GPPGPRGEPGPVGDQGERGEPGA---------EGYKGHVGVPGLRGATG-QQGPPGEPGD 1250
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG- 184
GL+ G+ G G A KP P + + P + G A G +G
Sbjct: 1251 QGEQGLKGERGSEGNKGKKGAPGPSGKPG-----IPGLQGLLGPKGIQGYHGADGISGNP 1305
Query: 185 --------RGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRGRP 217
+GLPG RG PGR+GL GA PP V G L G P
Sbjct: 1306 GKIGPPGKQGLPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSP 1347
Score = 46.6 bits (109), Expect = 2e-05
Identities = 55/176 (31%), Positives = 68/176 (38%), Gaps = 31/176 (17%)
Query: 57 PAVRGCK----REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P +RG K R+G PG GP P G P LR VG G A
Sbjct: 638 PGIRGKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGGTGPPGFPGLRGSVGPVGPIGPAGI 697
Query: 113 RGL-----DRRAPG----EGGRSPGGGL-EPS-PGARGAVGAAPAAARHRKPRGRSRRAP 161
G ++ PG +G + G L EP PG +GAVG P R G S +
Sbjct: 698 PGPMGLSGNKGLPGIKGDKGEQGTAGELGEPGYPGDKGAVGL-PGPPGMRGKSGPSGQTG 756
Query: 162 QMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
PGL G G G PG G+PG++G +G P G+ RG P
Sbjct: 757 D----------PGLQGPSGPPGPEGFPGDIGIPGQNGPEG-----PKGLLGNRGPP 797
Score = 46.6 bits (109), Expect = 2e-05
Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 28/162 (17%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G G+ + G + APG + +P L+ G G A G+ G G
Sbjct: 1251 QGEQGLKGERGSEGNKGKKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGIS----GNPG 1306
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
+ G + PG RG G A AP PP + G S G+ G
Sbjct: 1307 KIGPPGKQGLPGIRGGPGRTGLAG-----------APG------PPGVKGSSGLPGSPGI 1349
Query: 185 RGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRGRPWE 219
+G G +GLPG+ G+QG P G P L+G+P E
Sbjct: 1350 QGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGLKGQPGE 1391
Score = 45.8 bits (107), Expect = 4e-05
Identities = 49/154 (31%), Positives = 56/154 (36%), Gaps = 24/154 (15%)
Query: 75 GPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD--RRAPGEGGRSPGGGLE 132
GP T P PG A P R R G G GL + G+ G SPG +
Sbjct: 489 GPKGDTGPPGPPGPAGIPGPSGKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGFSPG---Q 545
Query: 133 PSPGARGAVGAA-----PAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGL 187
P PG +G G + P + +G P LPGL G G G
Sbjct: 546 PVPGEKGDQGLSGLMGPPGMQGDKGLKGH-------------PGLPGLPGEQGIPGFAGN 592
Query: 188 PGRRGLPGRSGLQG-AAVPPPVGVPSLRGRPWEA 220
G G PGR GL G P P G G P EA
Sbjct: 593 IGSPGYPGRQGLAGPEGNPGPKGAQGFIGSPGEA 626
Score = 45.1 bits (105), Expect = 7e-05
Identities = 49/158 (31%), Positives = 58/158 (36%), Gaps = 41/158 (25%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG- 124
G PG GP+ P GA P Q + +R G G +G+ + A GE G
Sbjct: 891 GYPGPPGVPGPIGPLGLPGHVGARGPPGSQGPKGQRGSRGPDGLLGEQGI-QGAKGEKGD 949
Query: 125 ---RSPGG--GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG 179
R P G G +PG RG G PGL
Sbjct: 950 QGKRGPHGLIGKTGNPGERGFQGK-----------------------------PGLQGLP 980
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G+TG RGLPG PG GLQG PP G + G P
Sbjct: 981 GSTGDRGLPGE---PGLRGLQGDVGPP--GEMGMEGPP 1013
Score = 42.4 bits (98), Expect = 4e-04
Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 23/105 (21%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+PG GR G E +PG +GA G +P A P G +PG+
Sbjct: 595 SPGYPGRQGLAGPEGNPGPKGAQGFIGSPGEAGQLGPEGERG-------------IPGIR 641
Query: 177 RAGGATGGRGLP------GRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G +G P G GL G GL G PP G P LRG
Sbjct: 642 GKKGFKGRQGFPGDFGDRGPAGLDGSPGLVGGTGPP--GFPGLRG 684
Score = 40.4 bits (93), Expect = 0.002
Identities = 48/158 (30%), Positives = 60/158 (37%), Gaps = 30/158 (18%)
Query: 64 REGSPGVSAQGG--PLEGTPRPAA-------------PGAAPRPRRQRLRRRRAKVGGWG 108
++G+PG S + G L+G P PG P +Q L R G G
Sbjct: 1268 KKGAPGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLPGIRGGPGRTG 1327
Query: 109 CARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRG-RSRRAPQMPL 165
A A PG G GL SPG +G G P + RG R + Q P
Sbjct: 1328 LAGA-------PGPPGVKGSSGLPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPC 1380
Query: 166 RVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAA 203
PGL G G +GL G +G PG G +G A
Sbjct: 1381 GD-----PGLKGQPGEYGVQGLTGFQGFPGPKGPEGDA 1413
Score = 36.6 bits (83), Expect = 0.024
Identities = 45/167 (26%), Positives = 59/167 (35%), Gaps = 29/167 (17%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG+ + GP T P G + P + G G +GL G R
Sbjct: 741 GPPGMRGKSGPSGQTGDPGLQGPSGPPGPEGFPGDIGIPGQNGPEGPKGL------LGNR 794
Query: 126 SPGG--GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL--------------- 168
P G GL+ + G G +GA KP + P +
Sbjct: 795 GPPGPPGLKGTQGEEGPIGAFGELGPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGET 854
Query: 169 -PPILPG---LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVP 211
P LPG ++ + G G RG PG G G G+ G P P GVP
Sbjct: 855 GPVGLPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMG--YPGPPGVP 899
Score = 36.6 bits (83), Expect = 0.024
Identities = 53/179 (29%), Positives = 67/179 (37%), Gaps = 48/179 (26%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPL-----EGTPRPAA----PGAAPRPRRQRLRRRRAKVGG 106
P G K E G PG+ GPL G P P PG RP + + + ++G
Sbjct: 1073 PGEDGEKGEMGLPGII---GPLGRSGQTGLPGPEGIVGIPGQRGRPGK---KGDKGQIGP 1126
Query: 107 WGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR 166
G +RG PG+ G+S G + + G RGAVG P G
Sbjct: 1127 TGEVGSRG----PPGKIGKS---GPKGARGTRGAVGHLGLMG----PDGE---------- 1165
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAV--------PPPVGVPSLRGRP 217
P +PG G G GLPG +G G G + P PVG RG P
Sbjct: 1166 ---PGIPGYRGHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGERGEP 1221
Score = 35.8 bits (81), Expect = 0.040
Identities = 44/147 (29%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAP----GAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
G PGV G L G+P P G +P Q R R G G GL + PG
Sbjct: 1333 GPPGVKGSSG-LPGSPGIQGPKGEQGLPGQPGIQGKRGHRGAQGDQGPCGDPGL-KGQPG 1390
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL----------RVLPPI 171
E G G + PG +G G A R PL R P
Sbjct: 1391 EYGVQGLTGFQGFPGPKGPEGDAGIVGISGPKGPIGHRGNTGPLGREGIIGPTGRTGPRG 1450
Query: 172 LPGLSRAGGATGGRGLPGRRGLPGRSG 198
G G G RG PG G PG G
Sbjct: 1451 EKGFRGETGPQGPRGQPGPPGPPGAPG 1477
Score = 32.7 bits (73), Expect = 0.34
Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 16/141 (11%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA-----P 120
G+PG+ GP P P P + + +G G +GL P
Sbjct: 522 GNPGLPGLPGPKGPKGDPGFSPGQPVPGEKGDQGLSGLMGPPGMQGDKGLKGHPGLPGLP 581
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
GE G G SPG G G A + P+G PG + G
Sbjct: 582 GEQGIPGFAGNIGSPGYPGRQGLAGPEG-NPGPKGAQGFIGS----------PGEAGQLG 630
Query: 181 ATGGRGLPGRRGLPGRSGLQG 201
G RG+PG RG G G QG
Sbjct: 631 PEGERGIPGIRGKKGFKGRQG 651
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 55.8 bits (133), Expect = 4e-08
Identities = 52/176 (29%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 55 ACPAVRG-----CKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGC 109
ACP+++G R G PG + GP EG RP PG P Q G G
Sbjct: 726 ACPSLQGTVTDMAGRPGQPGPKGEQGP-EGVGRPGKPGQPGLPGVQ---------GPPGL 775
Query: 110 ARARGLDRRAPGEGGRSPGG--------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAP 161
+G + PG G + P G G++ PG RG G P + P
Sbjct: 776 KGVQG-EPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGP 834
Query: 162 QMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
P PG G TG RG PG +G G G G P G G P
Sbjct: 835 VGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMP 890
Score = 53.9 bits (128), Expect = 1e-07
Identities = 51/175 (29%), Positives = 68/175 (38%), Gaps = 33/175 (18%)
Query: 52 RSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPG---------AAPRPRRQRLRRRRA 102
+S+ V+G + PG + G P PG + RPR + R +
Sbjct: 953 KSICGDCVQG--QRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNS 1010
Query: 103 KVGGWGCARARGLDRRA--PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRA 160
+ G GC + GL PG+ G G+ SPG G +G
Sbjct: 1011 E-GDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGP----------------- 1052
Query: 161 PQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
P P V P LPGL G TG G G G PG+ G GA PP G+P ++G
Sbjct: 1053 PGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPP--GLPGIKG 1105
Score = 50.4 bits (119), Expect = 2e-06
Identities = 56/181 (30%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 56 CPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
CPA+ + +G V A GP P PG P +Q R G G A G
Sbjct: 635 CPALSNLQ-DGDVRVVALPGPSGEKGEPGPPGFG-LPGKQGKAGERGLKGQKGDAGNPG- 691
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVG----------AAPA--------AARHRKPRGRS 157
D PG GR GL PG +G G A P+ A R +P +
Sbjct: 692 DPGTPGTTGRP---GLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKG 748
Query: 158 RRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG-AAVPPPVGVPSLRGR 216
+ P+ R P PGL G G +G+ G G PGR G+QG P G+P ++G
Sbjct: 749 EQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGR-GVQGPQGEPGAPGLPGIQGL 807
Query: 217 P 217
P
Sbjct: 808 P 808
Score = 46.6 bits (109), Expect = 2e-05
Identities = 50/157 (31%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPG--AAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G PG + G + RP PG P P Q + VG G DR A GE
Sbjct: 1270 GRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKG-------DRGATGER 1322
Query: 124 GRS--PGGGLEPS-PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G + PG P PG G G AA + P + P P PG + G
Sbjct: 1323 GLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGD-----PGAAGQKG 1377
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G +G G G PG+SG G PP G RG P
Sbjct: 1378 QAGEKGRAGMPGGPGKSGSMGPVGPP--GPAGERGHP 1412
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/170 (31%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Query: 57 PAVRGCKRE----GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
P + G K E GS G + GP EG P P P A PR R G G +
Sbjct: 1098 PGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGP-AGPRGER----------GPQGNS 1146
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGA-APAAARHRKPRGRSRRAPQMPLRVLP 169
+G D+ G+ G G PG G+ G P A + + P P P
Sbjct: 1147 GEKG-DQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGP 1205
Query: 170 PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRG 215
P + G + G G G PG RG PG +G G PP G P L G
Sbjct: 1206 PGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPG 1255
Score = 40.0 bits (92), Expect = 0.002
Identities = 54/191 (28%), Positives = 66/191 (34%), Gaps = 41/191 (21%)
Query: 64 REGSPGVSAQGGPLEGTPRPAA-PGAAPRPRRQRLRRRRAKVGGWGCARARGL------- 115
+EG PG GP P P PGAA + + + R GG G + + G
Sbjct: 1351 KEGPPGKQGFYGP----PGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPA 1406
Query: 116 -DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAAR-----------HRKPRGRSRRAPQM 163
+R PG G S GL PG+ G + R R SR M
Sbjct: 1407 GERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPM 1466
Query: 164 PLRVLP-----------------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP 206
+ P P PGL G G +GLPG RGLPG G +G
Sbjct: 1467 EMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIG 1526
Query: 207 PVGVPSLRGRP 217
G L G P
Sbjct: 1527 IAGENGLPGPP 1537
Score = 35.8 bits (81), Expect = 0.040
Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 19/159 (11%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR--APG-E 122
G PG A+ G EG P+ +P P G G A GLD + PG
Sbjct: 1177 GPPGPQAEKGS-EGIRGPSGLPGSPGPP--------GPPGIQGPAGLDGLDGKDGKPGLR 1227
Query: 123 GGRSPGG--GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G P G GL PG +G G P+G + P P P G A G
Sbjct: 1228 GDPGPAGPPGLMGPPGFKGKTGHPGLPG----PKGDCGK-PGPPGSTGRPGAEGEPGAMG 1282
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G PG G PG G G A VG+ RG E
Sbjct: 1283 PQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGE 1321
Score = 35.4 bits (80), Expect = 0.053
Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 122 EGGRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG 179
+G + G L PS PG+ G G + K G + P P R P +
Sbjct: 377 KGEKGESGALGPSGLPGSTGEKGQ-----KGEKGDGGIKGVPGKPGRDGRPGEICVIGPK 431
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G G GL G G G PP +G+P G P
Sbjct: 432 GQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDP 469
Score = 32.0 bits (71), Expect = 0.58
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 17/117 (14%)
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL-----PPILPGL 175
G+ G GG++ PG G G P P+G+ + L PP LPG
Sbjct: 399 GQKGEKGDGGIKGVPGKPGRDGR-PGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGP 457
Query: 176 ---------SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALAT 223
GG G +G G G+PG+ G G P GV +G P E T
Sbjct: 458 PGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGK--PGKPGVKGEKGDPCEVCPT 512
Score = 29.3 bits (64), Expect = 3.8
Identities = 31/116 (26%), Positives = 38/116 (32%), Gaps = 27/116 (23%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
A G+ G SPG GL PG G G + P PG
Sbjct: 574 ASGDVG-SPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGP-----------PGPVGP 621
Query: 179 GGATGGRGLPGRR---------------GLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G +G P LPG SG +G PP G+P +G+ E
Sbjct: 622 AGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGE 677
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 55.8 bits (133), Expect = 4e-08
Identities = 62/193 (32%), Positives = 78/193 (40%), Gaps = 18/193 (9%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRR----------AKVGGWGCARAR 113
RE + GG +PR A G P+ + +R RR + A+ C
Sbjct: 90 REPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGLP 149
Query: 114 GLD-RRAPGEGGRSPG--GGLEPSPGARGAVGAAPAAARHRKPRGR-SRRAPQMPLRVLP 169
G D RRAPG+GG S G G P P A A A A+ K +GR Q L VLP
Sbjct: 150 GSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWECLQNNLAVLP 209
Query: 170 PILPGLSRAGGA--TGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
L L + A R LP + + A+ P VP++ P A AAT
Sbjct: 210 GELGALPHSATAEEKPARALPAQDDRGASREREEGALAEPAPVPAVAHSP-PATVEAATS 268
Query: 228 RRCPLQLLRAGPA 240
R P LL GPA
Sbjct: 269 RASPPALL-PGPA 280
Score = 33.1 bits (74), Expect = 0.26
Identities = 39/132 (29%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Query: 98 RRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHR------ 151
RR R +G G R R AP GG +P P RG R R
Sbjct: 75 RRYRDLLGEEGLQRPREPPAAAPSAGGAAP---CSPRGARRGEPPQQQPRRRRREKEPEE 131
Query: 152 KPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG-RGLPGRRGLPGRSGLQGAAVPPPVGV 210
+P G + RA LP RA G GG +G PG+R + GA
Sbjct: 132 EPAGAAARAADAACNGLPG--SDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAA 189
Query: 211 PSLRGR-PWEAL 221
+GR WE L
Sbjct: 190 AKTQGRCCWECL 201
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 55.5 bits (132), Expect = 5e-08
Identities = 47/154 (30%), Positives = 58/154 (37%), Gaps = 16/154 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG S + GP P PG P R+ + G G A A G + G +
Sbjct: 1357 GPPGPSGEAGP------PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQ 1410
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
P G PG G G P + P P+ PP LPGL G+ G +
Sbjct: 1411 GPAG----KPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG--PPGLPGLKGDPGSKGEK 1464
Query: 186 GLPGRRGLPGRSGLQG----AAVPPPVGVPSLRG 215
G PG GL G G QG +P G P +G
Sbjct: 1465 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1498
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/165 (29%), Positives = 63/165 (38%), Gaps = 22/165 (13%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G++ + GP+ G A G + P Q R + G G RG R +GGR
Sbjct: 544 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRG---RPGADGGR 600
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-------------RVLPPIL 172
G+ PGA+G G R R PQ P + P L
Sbjct: 601 ----GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGL 656
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
PG + G G RG PG G PG +G+ G P P G +G P
Sbjct: 657 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGP--PGPKGNMGPQGEP 699
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/166 (30%), Positives = 61/166 (36%), Gaps = 22/166 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G P V G +EG P PA P P L+ G G DR PG
Sbjct: 439 QKGEPAVVEPGMLVEGPPGPAGPAGIMGP--PGLQGPTGPPGDPG-------DRGPPGRP 489
Query: 124 GRSPGGGLEPSPGAR--------GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G GL PG G P + + ++ LR PP GL
Sbjct: 490 GLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG-PPGPMGL 548
Query: 176 SRAGGATGGRGLPGRRGL---PGRSGLQGAAVPP-PVGVPSLRGRP 217
+ G GG G G +G PG G +G PP P G P RGRP
Sbjct: 549 TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 594
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/165 (30%), Positives = 66/165 (40%), Gaps = 26/165 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGC---ARARGL--DRRAP 120
G G + GP +G P P P +R ++G G A RGL R P
Sbjct: 622 GDKGHRGERGP-QGPPGP--------PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP 672
Query: 121 GEGGRSPGGGLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPL----RVLPPI 171
G G+ G++ PG +G +G P + P+G PQ P+ P
Sbjct: 673 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLP--GPQGPIGPPGEKGPQG 730
Query: 172 LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
PGL+ GA G G PG+ G G G G P P+G P RG
Sbjct: 731 KPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 775
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD--------R 117
G G + + GP+ P PG P Q L K G G +G+ R
Sbjct: 982 GPQGPTGETGPIGERGHPGPPGP---PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR 1038
Query: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177
PGE G G + +PG +G G P R P+ + P PG
Sbjct: 1039 GFPGERGLP---GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL--PGRPGPQG 1093
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G +G PG +G G +G G V PVG+P G
Sbjct: 1094 PPGPAGEKGAPGEKGPQGPAGRDG--VQGPVGLPGPAG 1129
Score = 46.6 bits (109), Expect = 2e-05
Identities = 60/199 (30%), Positives = 69/199 (34%), Gaps = 46/199 (23%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P +G K + G PG GP+ G P A P PR Q+ G G A
Sbjct: 1146 PGQKGSKGDKGENGPPGPPGLQGPV-GAPGIAGGDGEPGPRGQQ-----GMFGQKGDEGA 1199
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVG-----AAPAAARHRKPRG-RSRRAPQMPLR 166
RG PG G GL PG +G G P R P+G PQ P
Sbjct: 1200 RGF----PGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1255
Query: 167 VLP----------------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP---- 206
+ P PG + GG G RG G G PG +G GA PP
Sbjct: 1256 SVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDG 1315
Query: 207 ------PVGVPSLRGRPWE 219
PVG P G P E
Sbjct: 1316 PKGNPGPVGFPGDPGPPGE 1334
Score = 45.4 bits (106), Expect = 5e-05
Identities = 49/151 (32%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G S + G L G P P P P PR G G RGL + + GE G
Sbjct: 748 GKEGQSGEKGAL-GPPGPQGPIGYPGPR-----------GVKGADGVRGL-KGSKGEKGE 794
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-RVLPPILPGLSRAGGATGG 184
G + G +G G PRG P+ P R P PG S G G
Sbjct: 795 DGFPGFKGDMGLKGDRGEVGQIG----PRGED--GPEGPKGRAGPTGDPGPSGQAGEKGK 848
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G+PG G PGR G +G+ P G P G
Sbjct: 849 LGVPGLPGYPGRQGPKGSTGFP--GFPGANG 877
Score = 45.4 bits (106), Expect = 5e-05
Identities = 58/198 (29%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAP----GAAPRPRRQRLRRRRAKVGGWGCAR 111
P G + R+G G + G EG P P G A +P + LR VG G
Sbjct: 1377 PGAAGAEGRQGEKGAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1435
Query: 112 ARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------AAPAAARHRKPRGRSRR---- 159
A G D PG G GL+ PG++G G P + RG
Sbjct: 1436 AAGQDG-PPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP 1494
Query: 160 ---------APQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PL PP PGL G G +G G G G SGL G P G
Sbjct: 1495 GAKGDGGIPGPAGPLG--PPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP--PGSPGP 1550
Query: 211 PSLRGRPWEALATAATPR 228
P +P L++ T R
Sbjct: 1551 PGEVIQPLPILSSKKTRR 1568
Score = 45.1 bits (105), Expect = 7e-05
Identities = 48/166 (28%), Positives = 53/166 (31%), Gaps = 31/166 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG- 124
G PG GP P G P + L + G G G PG GG
Sbjct: 925 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG----PPGPGGV 980
Query: 125 ---RSPGGGLEP-----SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+ P G P PG G G K + PQ G+S
Sbjct: 981 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ-----------GIS 1029
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRG 215
G G RG PG RGLPG G G P PVG P RG
Sbjct: 1030 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG 1075
Score = 42.4 bits (98), Expect = 4e-04
Identities = 49/165 (29%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPR-RQRLRRRRAKVGGWGCARARGLDRRA--PGE 122
G G + GP+ G P P P P + VG G +G A PG
Sbjct: 1219 GEKGENGDVGPM-GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 1277
Query: 123 GGRSPGGGLEPSPGARGAVG----AAPAAARHRKPRGRSRRAPQ---MPLRVLPPILPGL 175
G + GG + G +G G A P A+ + P P PP PG
Sbjct: 1278 PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP 1337
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
+ G G +G G G PG G G A PP G P RG P A
Sbjct: 1338 AGQDGVGGDKGEDGDPGQPGPPGPSGEAGPP--GPPGKRGPPGAA 1380
Score = 38.9 bits (89), Expect = 0.005
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 37/169 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + GP EG A P P P Q + + V G PG GR
Sbjct: 814 GQIGPRGEDGP-EGPKGRAGPTGDPGPSGQAGEKGKLGVPG------------LPGYPGR 860
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----------------- 168
G PG GA G A KP R +R P P
Sbjct: 861 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 920
Query: 169 --PPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
PP PG G G G PG +G PG G G G P RG
Sbjct: 921 DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP-----GHPGQRG 964
Score = 38.1 bits (87), Expect = 0.008
Identities = 45/166 (27%), Positives = 58/166 (34%), Gaps = 28/166 (16%)
Query: 69 GVSAQGGPLE-GTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSP 127
GV +G P E G P P P+ +R + + G G A G + PG+ G
Sbjct: 1262 GVGEKGEPGEAGNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGA-KGPPGDDGPKG 1318
Query: 128 GGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGL 187
G PG G G A + + P PG G G G
Sbjct: 1319 NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD--------PGQPGPPGPSGEAGPPGP 1370
Query: 188 PGRRGLPGRSGLQ------------GAAVPP----PVGVPSLRGRP 217
PG+RG PG +G + GA PP PVG G+P
Sbjct: 1371 PGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1416
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 55.5 bits (132), Expect = 5e-08
Identities = 47/154 (30%), Positives = 58/154 (37%), Gaps = 16/154 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG S + GP P PG P R+ + G G A A G + G +
Sbjct: 1306 GPPGPSGEAGP------PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQ 1359
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
P G PG G G P + P P+ PP LPGL G+ G +
Sbjct: 1360 GPAG----KPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG--PPGLPGLKGDPGSKGEK 1413
Query: 186 GLPGRRGLPGRSGLQG----AAVPPPVGVPSLRG 215
G PG GL G G QG +P G P +G
Sbjct: 1414 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1447
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/165 (29%), Positives = 63/165 (38%), Gaps = 22/165 (13%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G++ + GP+ G A G + P Q R + G G RG R +GGR
Sbjct: 493 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRG---RPGADGGR 549
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-------------RVLPPIL 172
G+ PGA+G G R R PQ P + P L
Sbjct: 550 ----GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGL 605
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
PG + G G RG PG G PG +G+ G P P G +G P
Sbjct: 606 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGP--PGPKGNMGPQGEP 648
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/166 (30%), Positives = 61/166 (36%), Gaps = 22/166 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G P V G +EG P PA P P L+ G G DR PG
Sbjct: 388 QKGEPAVVEPGMLVEGPPGPAGPAGIMGP--PGLQGPTGPPGDPG-------DRGPPGRP 438
Query: 124 GRSPGGGLEPSPGAR--------GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G GL PG G P + + ++ LR PP GL
Sbjct: 439 GLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG-PPGPMGL 497
Query: 176 SRAGGATGGRGLPGRRGL---PGRSGLQGAAVPP-PVGVPSLRGRP 217
+ G GG G G +G PG G +G PP P G P RGRP
Sbjct: 498 TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 543
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/165 (30%), Positives = 66/165 (40%), Gaps = 26/165 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGC---ARARGL--DRRAP 120
G G + GP +G P P P +R ++G G A RGL R P
Sbjct: 571 GDKGHRGERGP-QGPPGP--------PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP 621
Query: 121 GEGGRSPGGGLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPL----RVLPPI 171
G G+ G++ PG +G +G P + P+G PQ P+ P
Sbjct: 622 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLP--GPQGPIGPPGEKGPQG 679
Query: 172 LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
PGL+ GA G G PG+ G G G G P P+G P RG
Sbjct: 680 KPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 724
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD--------R 117
G G + + GP+ P PG P Q L K G G +G+ R
Sbjct: 931 GPQGPTGETGPIGERGHPGPPGP---PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR 987
Query: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177
PGE G G + +PG +G G P R P+ + P PG
Sbjct: 988 GFPGERGLP---GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL--PGRPGPQG 1042
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G +G PG +G G +G G V PVG+P G
Sbjct: 1043 PPGPAGEKGAPGEKGPQGPAGRDG--VQGPVGLPGPAG 1078
Score = 46.6 bits (109), Expect = 2e-05
Identities = 60/199 (30%), Positives = 69/199 (34%), Gaps = 46/199 (23%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P +G K + G PG GP+ G P A P PR Q+ G G A
Sbjct: 1095 PGQKGSKGDKGENGPPGPPGLQGPV-GAPGIAGGDGEPGPRGQQ-----GMFGQKGDEGA 1148
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVG-----AAPAAARHRKPRG-RSRRAPQMPLR 166
RG PG G GL PG +G G P R P+G PQ P
Sbjct: 1149 RGF----PGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1204
Query: 167 VLP----------------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP---- 206
+ P PG + GG G RG G G PG +G GA PP
Sbjct: 1205 SVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDG 1264
Query: 207 ------PVGVPSLRGRPWE 219
PVG P G P E
Sbjct: 1265 PKGNPGPVGFPGDPGPPGE 1283
Score = 45.4 bits (106), Expect = 5e-05
Identities = 49/151 (32%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G S + G L G P P P P PR G G RGL + + GE G
Sbjct: 697 GKEGQSGEKGAL-GPPGPQGPIGYPGPR-----------GVKGADGVRGL-KGSKGEKGE 743
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-RVLPPILPGLSRAGGATGG 184
G + G +G G PRG P+ P R P PG S G G
Sbjct: 744 DGFPGFKGDMGLKGDRGEVGQIG----PRGED--GPEGPKGRAGPTGDPGPSGQAGEKGK 797
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G+PG G PGR G +G+ P G P G
Sbjct: 798 LGVPGLPGYPGRQGPKGSTGFP--GFPGANG 826
Score = 45.4 bits (106), Expect = 5e-05
Identities = 58/198 (29%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAP----GAAPRPRRQRLRRRRAKVGGWGCAR 111
P G + R+G G + G EG P P G A +P + LR VG G
Sbjct: 1326 PGAAGAEGRQGEKGAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1384
Query: 112 ARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------AAPAAARHRKPRGRSRR---- 159
A G D PG G GL+ PG++G G P + RG
Sbjct: 1385 AAGQDG-PPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP 1443
Query: 160 ---------APQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PL PP PGL G G +G G G G SGL G P G
Sbjct: 1444 GAKGDGGIPGPAGPLG--PPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP--PGSPGP 1499
Query: 211 PSLRGRPWEALATAATPR 228
P +P L++ T R
Sbjct: 1500 PGEVIQPLPILSSKKTRR 1517
Score = 45.1 bits (105), Expect = 7e-05
Identities = 48/166 (28%), Positives = 53/166 (31%), Gaps = 31/166 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG- 124
G PG GP P G P + L + G G G PG GG
Sbjct: 874 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG----PPGPGGV 929
Query: 125 ---RSPGGGLEP-----SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+ P G P PG G G K + PQ G+S
Sbjct: 930 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ-----------GIS 978
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRG 215
G G RG PG RGLPG G G P PVG P RG
Sbjct: 979 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG 1024
Score = 42.4 bits (98), Expect = 4e-04
Identities = 49/165 (29%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPR-RQRLRRRRAKVGGWGCARARGLDRRA--PGE 122
G G + GP+ G P P P P + VG G +G A PG
Sbjct: 1168 GEKGENGDVGPM-GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 1226
Query: 123 GGRSPGGGLEPSPGARGAVG----AAPAAARHRKPRGRSRRAPQ---MPLRVLPPILPGL 175
G + GG + G +G G A P A+ + P P PP PG
Sbjct: 1227 PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP 1286
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
+ G G +G G G PG G G A PP G P RG P A
Sbjct: 1287 AGQDGVGGDKGEDGDPGQPGPPGPSGEAGPP--GPPGKRGPPGAA 1329
Score = 38.9 bits (89), Expect = 0.005
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 37/169 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + GP EG A P P P Q + + V G PG GR
Sbjct: 763 GQIGPRGEDGP-EGPKGRAGPTGDPGPSGQAGEKGKLGVPG------------LPGYPGR 809
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----------------- 168
G PG GA G A KP R +R P P
Sbjct: 810 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 869
Query: 169 --PPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
PP PG G G G PG +G PG G G G P RG
Sbjct: 870 DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP-----GHPGQRG 913
Score = 38.1 bits (87), Expect = 0.008
Identities = 45/166 (27%), Positives = 58/166 (34%), Gaps = 28/166 (16%)
Query: 69 GVSAQGGPLE-GTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSP 127
GV +G P E G P P P+ +R + + G G A G + PG+ G
Sbjct: 1211 GVGEKGEPGEAGNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGA-KGPPGDDGPKG 1267
Query: 128 GGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGL 187
G PG G G A + + P PG G G G
Sbjct: 1268 NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD--------PGQPGPPGPSGEAGPPGP 1319
Query: 188 PGRRGLPGRSGLQ------------GAAVPP----PVGVPSLRGRP 217
PG+RG PG +G + GA PP PVG G+P
Sbjct: 1320 PGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1365
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 55.5 bits (132), Expect = 5e-08
Identities = 47/154 (30%), Positives = 58/154 (37%), Gaps = 16/154 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG S + GP P PG P R+ + G G A A G + G +
Sbjct: 1345 GPPGPSGEAGP------PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQ 1398
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
P G PG G G P + P P+ PP LPGL G+ G +
Sbjct: 1399 GPAG----KPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMG--PPGLPGLKGDPGSKGEK 1452
Query: 186 GLPGRRGLPGRSGLQG----AAVPPPVGVPSLRG 215
G PG GL G G QG +P G P +G
Sbjct: 1453 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKG 1486
Score = 50.4 bits (119), Expect = 2e-06
Identities = 49/165 (29%), Positives = 63/165 (38%), Gaps = 22/165 (13%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G++ + GP+ G A G + P Q R + G G RG R +GGR
Sbjct: 532 GPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRG---RPGADGGR 588
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-------------RVLPPIL 172
G+ PGA+G G R R PQ P + P L
Sbjct: 589 ----GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGL 644
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
PG + G G RG PG G PG +G+ G P P G +G P
Sbjct: 645 PGEAGPRGLLGPRGTPGAPGQPGMAGVDGP--PGPKGNMGPQGEP 687
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/166 (30%), Positives = 61/166 (36%), Gaps = 22/166 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
++G P V G +EG P PA P P L+ G G DR PG
Sbjct: 427 QKGEPAVVEPGMLVEGPPGPAGPAGIMGP--PGLQGPTGPPGDPG-------DRGPPGRP 477
Query: 124 GRSPGGGLEPSPGAR--------GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G GL PG G P + + ++ LR PP GL
Sbjct: 478 GLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRG-PPGPMGL 536
Query: 176 SRAGGATGGRGLPGRRGL---PGRSGLQGAAVPP-PVGVPSLRGRP 217
+ G GG G G +G PG G +G PP P G P RGRP
Sbjct: 537 TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP 582
Score = 47.8 bits (112), Expect = 1e-05
Identities = 50/165 (30%), Positives = 66/165 (40%), Gaps = 26/165 (15%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGC---ARARGL--DRRAP 120
G G + GP +G P P P +R ++G G A RGL R P
Sbjct: 610 GDKGHRGERGP-QGPPGP--------PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP 660
Query: 121 GEGGRSPGGGLEPSPGARGAVG-----AAPAAARHRKPRGRSRRAPQMPL----RVLPPI 171
G G+ G++ PG +G +G P + P+G PQ P+ P
Sbjct: 661 GAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLP--GPQGPIGPPGEKGPQG 718
Query: 172 LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
PGL+ GA G G PG+ G G G G P P+G P RG
Sbjct: 719 KPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRG 763
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/158 (28%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD--------R 117
G G + + GP+ P PG P Q L K G G +G+ R
Sbjct: 970 GPQGPTGETGPIGERGHPGPPGP---PGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR 1026
Query: 118 RAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177
PGE G G + +PG +G G P R P+ + P PG
Sbjct: 1027 GFPGERGLP---GAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGL--PGRPGPQG 1081
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G +G PG +G G +G G V PVG+P G
Sbjct: 1082 PPGPAGEKGAPGEKGPQGPAGRDG--VQGPVGLPGPAG 1117
Score = 46.6 bits (109), Expect = 2e-05
Identities = 60/199 (30%), Positives = 69/199 (34%), Gaps = 46/199 (23%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P +G K + G PG GP+ G P A P PR Q+ G G A
Sbjct: 1134 PGQKGSKGDKGENGPPGPPGLQGPV-GAPGIAGGDGEPGPRGQQ-----GMFGQKGDEGA 1187
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVG-----AAPAAARHRKPRG-RSRRAPQMPLR 166
RG PG G GL PG +G G P R P+G PQ P
Sbjct: 1188 RGF----PGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1243
Query: 167 VLP----------------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP---- 206
+ P PG + GG G RG G G PG +G GA PP
Sbjct: 1244 SVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDG 1303
Query: 207 ------PVGVPSLRGRPWE 219
PVG P G P E
Sbjct: 1304 PKGNPGPVGFPGDPGPPGE 1322
Score = 45.4 bits (106), Expect = 5e-05
Identities = 49/151 (32%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G S + G L G P P P P PR G G RGL + + GE G
Sbjct: 736 GKEGQSGEKGAL-GPPGPQGPIGYPGPR-----------GVKGADGVRGL-KGSKGEKGE 782
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPL-RVLPPILPGLSRAGGATGG 184
G + G +G G PRG P+ P R P PG S G G
Sbjct: 783 DGFPGFKGDMGLKGDRGEVGQIG----PRGED--GPEGPKGRAGPTGDPGPSGQAGEKGK 836
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G+PG G PGR G +G+ P G P G
Sbjct: 837 LGVPGLPGYPGRQGPKGSTGFP--GFPGANG 865
Score = 45.4 bits (106), Expect = 5e-05
Identities = 58/198 (29%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 57 PAVRGCK-REGSPGVSAQGGPLEGTPRPAAP----GAAPRPRRQRLRRRRAKVGGWGCAR 111
P G + R+G G + G EG P P G A +P + LR VG G
Sbjct: 1365 PGAAGAEGRQGEKGAKGEAGA-EGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPG 1423
Query: 112 ARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------AAPAAARHRKPRGRSRR---- 159
A G D PG G GL+ PG++G G P + RG
Sbjct: 1424 AAGQDG-PPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSP 1482
Query: 160 ---------APQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PL PP PGL G G +G G G G SGL G P G
Sbjct: 1483 GAKGDGGIPGPAGPLG--PPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGP--PGSPGP 1538
Query: 211 PSLRGRPWEALATAATPR 228
P +P L++ T R
Sbjct: 1539 PGEVIQPLPILSSKKTRR 1556
Score = 45.1 bits (105), Expect = 7e-05
Identities = 48/166 (28%), Positives = 53/166 (31%), Gaps = 31/166 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG- 124
G PG GP P G P + L + G G G PG GG
Sbjct: 913 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTG----PPGPGGV 968
Query: 125 ---RSPGGGLEP-----SPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+ P G P PG G G K + PQ G+S
Sbjct: 969 VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQ-----------GIS 1017
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG-------AAVPPPVGVPSLRG 215
G G RG PG RGLPG G G P PVG P RG
Sbjct: 1018 GKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERG 1063
Score = 42.4 bits (98), Expect = 4e-04
Identities = 49/165 (29%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPR-RQRLRRRRAKVGGWGCARARGLDRRA--PGE 122
G G + GP+ G P P P P + VG G +G A PG
Sbjct: 1207 GEKGENGDVGPM-GPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGP 1265
Query: 123 GGRSPGGGLEPSPGARGAVG----AAPAAARHRKPRGRSRRAPQ---MPLRVLPPILPGL 175
G + GG + G +G G A P A+ + P P PP PG
Sbjct: 1266 PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP 1325
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
+ G G +G G G PG G G A PP G P RG P A
Sbjct: 1326 AGQDGVGGDKGEDGDPGQPGPPGPSGEAGPP--GPPGKRGPPGAA 1368
Score = 38.9 bits (89), Expect = 0.005
Identities = 48/169 (28%), Positives = 53/169 (31%), Gaps = 37/169 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + GP EG A P P P Q + + V G PG GR
Sbjct: 802 GQIGPRGEDGP-EGPKGRAGPTGDPGPSGQAGEKGKLGVPG------------LPGYPGR 848
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----------------- 168
G PG GA G A KP R +R P P
Sbjct: 849 QGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGG 908
Query: 169 --PPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
PP PG G G G PG +G PG G G G P RG
Sbjct: 909 DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLP-----GHPGQRG 952
Score = 38.1 bits (87), Expect = 0.008
Identities = 45/166 (27%), Positives = 58/166 (34%), Gaps = 28/166 (16%)
Query: 69 GVSAQGGPLE-GTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSP 127
GV +G P E G P P P+ +R + + G G A G + PG+ G
Sbjct: 1250 GVGEKGEPGEAGNPGPPGEAGVGGPKGER--GEKGEAGPPGAAGPPGA-KGPPGDDGPKG 1306
Query: 128 GGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGL 187
G PG G G A + + P PG G G G
Sbjct: 1307 NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGD--------PGQPGPPGPSGEAGPPGP 1358
Query: 188 PGRRGLPGRSGLQ------------GAAVPP----PVGVPSLRGRP 217
PG+RG PG +G + GA PP PVG G+P
Sbjct: 1359 PGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1404
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 55.5 bits (132), Expect = 5e-08
Identities = 56/171 (32%), Positives = 65/171 (38%), Gaps = 35/171 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V G REG PG GP P PG P R + + G G ++G
Sbjct: 937 PGVPG--REGPPGFPGLPGP------PGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG-- 986
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVG----------AAPAAARHRKPRG-------RSRR 159
APG G GL +PG G G PA + G RS
Sbjct: 987 --APGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSAD 1044
Query: 160 APQMPLRVLP-----PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVP 205
PQ P LP P +PGL A G G G+PG GLPGR G+ G P
Sbjct: 1045 GPQGPPG-LPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGP 1094
Score = 48.5 bits (114), Expect = 6e-06
Identities = 46/161 (28%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG--WGCA 110
S P G + G G++ GP G P P P P P GG W A
Sbjct: 984 SKGAPGPAGAR--GESGLAGAPGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTA 1040
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPP 170
R+ + PG G G+ PGA+G VGA P +P R
Sbjct: 1041 RSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPG-----------FPGLPGR---- 1085
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVP 211
G++ G G RG G +G PG+ G+ +P P G P
Sbjct: 1086 --EGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPP 1124
Score = 48.1 bits (113), Expect = 8e-06
Identities = 50/176 (28%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PG 121
R G PG GP G P P +P P Q + + G G G D PG
Sbjct: 768 RAGPPGSPCLPGP-PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPG 826
Query: 122 EGGRSPGGGLEPSPGARGAVG-------------AAPAAARHRKPRGRSRRAPQMPLRVL 168
E G+ G + PG G VG P P G S R ++ +
Sbjct: 827 EDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM 886
Query: 169 P--------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGR 216
L G G G G+PG G PGR G+ + VP P G+P + GR
Sbjct: 887 EGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGR 942
Score = 45.4 bits (106), Expect = 5e-05
Identities = 48/163 (29%), Positives = 60/163 (36%), Gaps = 28/163 (17%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P + G K E G PG ++ G + G P P P P P +
Sbjct: 1229 PGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFA----------- 1277
Query: 116 DRRAPGEGGRSPGGGLEPSP-GARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG G PG P P GA+G VG P G Q P L +
Sbjct: 1278 ESSRPGPPGL-PGNQGPPGPKGAKGEVGPPG-------PPG------QFPFDFLQ-LEAE 1322
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
+ G G G G RG PG G G+++P P G P RG P
Sbjct: 1323 MKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYP 1365
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/204 (27%), Positives = 69/204 (33%), Gaps = 42/204 (20%)
Query: 65 EGSPGVSAQGGP-LEGTPRPAAP-------------GAAPRPRRQRLRRRRAKVGGWGCA 110
+G PGV +G P +G P P P G+ + LR R G G
Sbjct: 852 KGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPP 911
Query: 111 RARGLDRRAPGEGGRS-------PG-GGLEPSPGARGAVG-----AAPAAARHRKPRGRS 157
GL PGE GR PG GL PG G G P P GR+
Sbjct: 912 GVPGL----PGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT 967
Query: 158 RRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGV 210
+ + P G A G G RG G G PG +G G PP P G
Sbjct: 968 GQKGSLG-EAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF 1026
Query: 211 PSLRGRP---WEALATAATPRRCP 231
+ G W +A P+ P
Sbjct: 1027 DDMEGSGGPFWSTARSADGPQGPP 1050
Score = 35.4 bits (80), Expect = 0.053
Identities = 53/189 (28%), Positives = 61/189 (32%), Gaps = 51/189 (26%)
Query: 60 RGCKRE-GSPGVSAQGGP-LEGTPRP---------------AAPGAAPRPRRQRLRRRRA 102
RG + E G PG G P L G P P + PG RP
Sbjct: 1098 RGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAG 1157
Query: 103 KVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQ 162
G G RG +PG G G SP GA+G A A+ R P
Sbjct: 1158 PKGNLGSKGERG----SPGPKGEKGEPGSIFSPDG-GALGPAQKGAKGEP----GFRGP- 1207
Query: 163 MPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG--------------AAVPPPV 208
PG G G G PGR G PG +GL+G +P P
Sbjct: 1208 ----------PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPP 1257
Query: 209 GVPSLRGRP 217
G P G P
Sbjct: 1258 GPPGPPGPP 1266
Score = 34.7 bits (78), Expect = 0.090
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 174 GLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVP---SLRGRPWEALATAATPRR 229
G + GG G +G PG G PGR+G G+ +P P G+P S G AL T P+
Sbjct: 746 GRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQG 805
Query: 230 CP 231
P
Sbjct: 806 PP 807
Score = 33.1 bits (74), Expect = 0.26
Identities = 47/181 (25%), Positives = 60/181 (33%), Gaps = 38/181 (20%)
Query: 65 EGSPGVSAQG--GPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
+G PG+ +G GP G P P P + P P RQ + PG
Sbjct: 1385 QGPPGIGYEGRQGP-PGPPGPPGPPSFPGPHRQTI--------------------SVPGP 1423
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G P G P PG GA A + G+ P+ L + R
Sbjct: 1424 PG--PPGPPGP-PGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGF 1480
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPV------------GVPSLRGRPWEALATAATPRRC 230
L R LP + + AA+ PPV P RPW A A+P R
Sbjct: 1481 RKVQLEARTPLPRGTDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRL 1540
Query: 231 P 231
P
Sbjct: 1541 P 1541
Score = 30.8 bits (68), Expect = 1.3
Identities = 37/144 (25%), Positives = 48/144 (33%), Gaps = 34/144 (23%)
Query: 80 TPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG-RSPGGGLEPSPGAR 138
T P A G++ R + V G G D + +G R+PGG ++ G +
Sbjct: 696 TTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEG-GLK 754
Query: 139 GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLP---- 194
G G P +PG G G LPG GLP
Sbjct: 755 GQKGE--------------------------PGVPGPPGRAGPPGSPCLPGPPGLPCPVS 788
Query: 195 --GRSGLQGAAVPPPVGVPSLRGR 216
G +G VP P G P GR
Sbjct: 789 PLGPAGPALQTVPGPQGPPGPPGR 812
Score = 28.9 bits (63), Expect = 4.9
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
RG+P PG + +P P P GRPW L + P
Sbjct: 172 RGIPSS---PGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSVP 211
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 55.5 bits (132), Expect = 5e-08
Identities = 56/171 (32%), Positives = 65/171 (38%), Gaps = 35/171 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V G REG PG GP P PG P R + + G G ++G
Sbjct: 522 PGVPG--REGPPGFPGLPGP------PGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG-- 571
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVG----------AAPAAARHRKPRG-------RSRR 159
APG G GL +PG G G PA + G RS
Sbjct: 572 --APGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSAD 629
Query: 160 APQMPLRVLP-----PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVP 205
PQ P LP P +PGL A G G G+PG GLPGR G+ G P
Sbjct: 630 GPQGPPG-LPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGP 679
Score = 48.5 bits (114), Expect = 6e-06
Identities = 46/161 (28%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG--WGCA 110
S P G + G G++ GP G P P P P P GG W A
Sbjct: 569 SKGAPGPAGAR--GESGLAGAPGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTA 625
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPP 170
R+ + PG G G+ PGA+G VGA P +P R
Sbjct: 626 RSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPG-----------FPGLPGR---- 670
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVP 211
G++ G G RG G +G PG+ G+ +P P G P
Sbjct: 671 --EGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPP 709
Score = 48.1 bits (113), Expect = 8e-06
Identities = 50/176 (28%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PG 121
R G PG GP G P P +P P Q + + G G G D PG
Sbjct: 353 RAGPPGSPCLPGP-PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPG 411
Query: 122 EGGRSPGGGLEPSPGARGAVG-------------AAPAAARHRKPRGRSRRAPQMPLRVL 168
E G+ G + PG G VG P P G S R ++ +
Sbjct: 412 EDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM 471
Query: 169 P--------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGR 216
L G G G G+PG G PGR G+ + VP P G+P + GR
Sbjct: 472 EGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGR 527
Score = 45.4 bits (106), Expect = 5e-05
Identities = 48/163 (29%), Positives = 60/163 (36%), Gaps = 28/163 (17%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P + G K E G PG ++ G + G P P P P P +
Sbjct: 814 PGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFA----------- 862
Query: 116 DRRAPGEGGRSPGGGLEPSP-GARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG G PG P P GA+G VG P G Q P L +
Sbjct: 863 ESSRPGPPGL-PGNQGPPGPKGAKGEVGPPG-------PPG------QFPFDFLQ-LEAE 907
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
+ G G G G RG PG G G+++P P G P RG P
Sbjct: 908 MKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYP 950
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/204 (27%), Positives = 69/204 (33%), Gaps = 42/204 (20%)
Query: 65 EGSPGVSAQGGP-LEGTPRPAAP-------------GAAPRPRRQRLRRRRAKVGGWGCA 110
+G PGV +G P +G P P P G+ + LR R G G
Sbjct: 437 KGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPP 496
Query: 111 RARGLDRRAPGEGGRS-------PG-GGLEPSPGARGAVG-----AAPAAARHRKPRGRS 157
GL PGE GR PG GL PG G G P P GR+
Sbjct: 497 GVPGL----PGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT 552
Query: 158 RRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGV 210
+ + P G A G G RG G G PG +G G PP P G
Sbjct: 553 GQKGSLG-EAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF 611
Query: 211 PSLRGRP---WEALATAATPRRCP 231
+ G W +A P+ P
Sbjct: 612 DDMEGSGGPFWSTARSADGPQGPP 635
Score = 35.4 bits (80), Expect = 0.053
Identities = 53/189 (28%), Positives = 61/189 (32%), Gaps = 51/189 (26%)
Query: 60 RGCKRE-GSPGVSAQGGP-LEGTPRP---------------AAPGAAPRPRRQRLRRRRA 102
RG + E G PG G P L G P P + PG RP
Sbjct: 683 RGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAG 742
Query: 103 KVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQ 162
G G RG +PG G G SP GA+G A A+ R P
Sbjct: 743 PKGNLGSKGERG----SPGPKGEKGEPGSIFSPDG-GALGPAQKGAKGEP----GFRGP- 792
Query: 163 MPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG--------------AAVPPPV 208
PG G G G PGR G PG +GL+G +P P
Sbjct: 793 ----------PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPP 842
Query: 209 GVPSLRGRP 217
G P G P
Sbjct: 843 GPPGPPGPP 851
Score = 34.7 bits (78), Expect = 0.090
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 174 GLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVP---SLRGRPWEALATAATPRR 229
G + GG G +G PG G PGR+G G+ +P P G+P S G AL T P+
Sbjct: 331 GRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQG 390
Query: 230 CP 231
P
Sbjct: 391 PP 392
Score = 33.1 bits (74), Expect = 0.26
Identities = 47/181 (25%), Positives = 60/181 (33%), Gaps = 38/181 (20%)
Query: 65 EGSPGVSAQG--GPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
+G PG+ +G GP G P P P + P P RQ + PG
Sbjct: 970 QGPPGIGYEGRQGP-PGPPGPPGPPSFPGPHRQTI--------------------SVPGP 1008
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G P G P PG GA A + G+ P+ L + R
Sbjct: 1009 PG--PPGPPGP-PGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGF 1065
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPV------------GVPSLRGRPWEALATAATPRRC 230
L R LP + + AA+ PPV P RPW A A+P R
Sbjct: 1066 RKVQLEARTPLPRGTDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRL 1125
Query: 231 P 231
P
Sbjct: 1126 P 1126
Score = 30.8 bits (68), Expect = 1.3
Identities = 37/144 (25%), Positives = 48/144 (33%), Gaps = 34/144 (23%)
Query: 80 TPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG-RSPGGGLEPSPGAR 138
T P A G++ R + V G G D + +G R+PGG ++ G +
Sbjct: 281 TTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEG-GLK 339
Query: 139 GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLP---- 194
G G P +PG G G LPG GLP
Sbjct: 340 GQKGE--------------------------PGVPGPPGRAGPPGSPCLPGPPGLPCPVS 373
Query: 195 --GRSGLQGAAVPPPVGVPSLRGR 216
G +G VP P G P GR
Sbjct: 374 PLGPAGPALQTVPGPQGPPGPPGR 397
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 55.5 bits (132), Expect = 5e-08
Identities = 56/171 (32%), Positives = 65/171 (38%), Gaps = 35/171 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V G REG PG GP P PG P R + + G G ++G
Sbjct: 702 PGVPG--REGPPGFPGLPGP------PGPPGREGPPGRTGQKGSLGEAGAPGHKGSKG-- 751
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVG----------AAPAAARHRKPRG-------RSRR 159
APG G GL +PG G G PA + G RS
Sbjct: 752 --APGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSAD 809
Query: 160 APQMPLRVLP-----PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVP 205
PQ P LP P +PGL A G G G+PG GLPGR G+ G P
Sbjct: 810 GPQGPPG-LPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGP 859
Score = 48.5 bits (114), Expect = 6e-06
Identities = 46/161 (28%), Positives = 60/161 (37%), Gaps = 22/161 (13%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG--WGCA 110
S P G + G G++ GP G P P P P P GG W A
Sbjct: 749 SKGAPGPAGAR--GESGLAGAPGPA-GPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTA 805
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPP 170
R+ + PG G G+ PGA+G VGA P +P R
Sbjct: 806 RSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPG-----------FPGLPGR---- 850
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVP 211
G++ G G RG G +G PG+ G+ +P P G P
Sbjct: 851 --EGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPP 889
Score = 48.1 bits (113), Expect = 8e-06
Identities = 50/176 (28%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRA--PG 121
R G PG GP G P P +P P Q + + G G G D PG
Sbjct: 533 RAGPPGSPCLPGP-PGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPG 591
Query: 122 EGGRSPGGGLEPSPGARGAVG-------------AAPAAARHRKPRGRSRRAPQMPLRVL 168
E G+ G + PG G VG P P G S R ++ +
Sbjct: 592 EDGKPGDTGPQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDM 651
Query: 169 P--------PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGR 216
L G G G G+PG G PGR G+ + VP P G+P + GR
Sbjct: 652 EGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGR 707
Score = 45.4 bits (106), Expect = 5e-05
Identities = 48/163 (29%), Positives = 60/163 (36%), Gaps = 28/163 (17%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P + G K E G PG ++ G + G P P P P P +
Sbjct: 994 PGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFA----------- 1042
Query: 116 DRRAPGEGGRSPGGGLEPSP-GARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG G PG P P GA+G VG P G Q P L +
Sbjct: 1043 ESSRPGPPGL-PGNQGPPGPKGAKGEVGPPG-------PPG------QFPFDFLQ-LEAE 1087
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
+ G G G G RG PG G G+++P P G P RG P
Sbjct: 1088 MKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYP 1130
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/204 (27%), Positives = 69/204 (33%), Gaps = 42/204 (20%)
Query: 65 EGSPGVSAQGGP-LEGTPRPAAP-------------GAAPRPRRQRLRRRRAKVGGWGCA 110
+G PGV +G P +G P P P G+ + LR R G G
Sbjct: 617 KGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPP 676
Query: 111 RARGLDRRAPGEGGRS-------PG-GGLEPSPGARGAVG-----AAPAAARHRKPRGRS 157
GL PGE GR PG GL PG G G P P GR+
Sbjct: 677 GVPGL----PGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGREGPPGRT 732
Query: 158 RRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------PVGV 210
+ + P G A G G RG G G PG +G G PP P G
Sbjct: 733 GQKGSLG-EAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGF 791
Query: 211 PSLRGRP---WEALATAATPRRCP 231
+ G W +A P+ P
Sbjct: 792 DDMEGSGGPFWSTARSADGPQGPP 815
Score = 35.4 bits (80), Expect = 0.053
Identities = 53/189 (28%), Positives = 61/189 (32%), Gaps = 51/189 (26%)
Query: 60 RGCKRE-GSPGVSAQGGP-LEGTPRP---------------AAPGAAPRPRRQRLRRRRA 102
RG + E G PG G P L G P P + PG RP
Sbjct: 863 RGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAG 922
Query: 103 KVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQ 162
G G RG +PG G G SP GA+G A A+ R P
Sbjct: 923 PKGNLGSKGERG----SPGPKGEKGEPGSIFSPDG-GALGPAQKGAKGEP----GFRGP- 972
Query: 163 MPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG--------------AAVPPPV 208
PG G G G PGR G PG +GL+G +P P
Sbjct: 973 ----------PGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPP 1022
Query: 209 GVPSLRGRP 217
G P G P
Sbjct: 1023 GPPGPPGPP 1031
Score = 34.7 bits (78), Expect = 0.090
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 174 GLSRAGGATGGRGLPGRRGLPGRSGLQGA-AVPPPVGVP---SLRGRPWEALATAATPRR 229
G + GG G +G PG G PGR+G G+ +P P G+P S G AL T P+
Sbjct: 511 GRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQG 570
Query: 230 CP 231
P
Sbjct: 571 PP 572
Score = 33.1 bits (74), Expect = 0.26
Identities = 47/181 (25%), Positives = 60/181 (33%), Gaps = 38/181 (20%)
Query: 65 EGSPGVSAQG--GPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
+G PG+ +G GP G P P P + P P RQ + PG
Sbjct: 1150 QGPPGIGYEGRQGP-PGPPGPPGPPSFPGPHRQTI--------------------SVPGP 1188
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G P G P PG GA A + G+ P+ L + R
Sbjct: 1189 PG--PPGPPGP-PGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGF 1245
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPV------------GVPSLRGRPWEALATAATPRRC 230
L R LP + + AA+ PPV P RPW A A+P R
Sbjct: 1246 RKVQLEARTPLPRGTDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRL 1305
Query: 231 P 231
P
Sbjct: 1306 P 1306
Score = 30.8 bits (68), Expect = 1.3
Identities = 37/144 (25%), Positives = 48/144 (33%), Gaps = 34/144 (23%)
Query: 80 TPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG-RSPGGGLEPSPGAR 138
T P A G++ R + V G G D + +G R+PGG ++ G +
Sbjct: 461 TTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEG-GLK 519
Query: 139 GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLP---- 194
G G P +PG G G LPG GLP
Sbjct: 520 GQKGE--------------------------PGVPGPPGRAGPPGSPCLPGPPGLPCPVS 553
Query: 195 --GRSGLQGAAVPPPVGVPSLRGR 216
G +G VP P G P GR
Sbjct: 554 PLGPAGPALQTVPGPQGPPGPPGR 577
Score = 28.9 bits (63), Expect = 4.9
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
RG+P PG + +P P P GRPW L + P
Sbjct: 172 RGIPSS---PGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSVP 211
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 55.5 bits (132), Expect = 5e-08
Identities = 54/163 (33%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P G K E G PG GP P +PG+ P K G G +G+
Sbjct: 1076 PGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP---------GKPGPHGDLGFKGI 1126
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G R P G L PG+ G +G R P + LR PP G
Sbjct: 1127 KGLLGPPGIRGPPG-LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRA-PPGPRGN 1184
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRP 217
A GA G RG PG GLPGR G G A P P G+ G P
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Score = 51.6 bits (122), Expect = 7e-07
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 64 REGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
R+G+ G + GP +EG P P A P + G G +RG APG
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP---------GQTGNRGPPGSRG-SPGAPG 1254
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM--PLRVLPPILPGLSRAG 179
G PG + G +G++G H P+G A M P R+ P PGL
Sbjct: 1255 PPG-PPGSHVIGIKGDKGSMG-------HPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPR 1306
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
G G +G PG +G G G G+ PP P G P +RG P
Sbjct: 1307 GDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Score = 49.3 bits (116), Expect = 4e-06
Identities = 51/167 (30%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
SL CP G G PG G +G P A PG P R + G G
Sbjct: 719 SLGCPGKMG--EPGLPGKPGLPGA-KGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
GL PG G G PG G G + P GR P+ L
Sbjct: 776 PGL----PGTPGNEGLDGPRGDPGQPGPPG-------EQGPPGRCIEGPRGAQG-----L 819
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
PGL+ G G RG G +G PG GL + P G P + G E
Sbjct: 820 PGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGE 866
Score = 49.3 bits (116), Expect = 4e-06
Identities = 49/166 (29%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + GPL P PG P + +G G A G PG G
Sbjct: 859 GIPGHQGEMGPLGQRGYPGNPGILGPPGEDGV------IGMMGFPGAIG----PPGPPGN 908
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----PPILPGLSRAGGA 181
G SPG G G + + P V+ P L G + G
Sbjct: 909 PGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGE 968
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G RG+PG GL G GL G A PP G P LRG P
Sbjct: 969 KGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 48.9 bits (115), Expect = 5e-06
Identities = 52/163 (31%), Positives = 60/163 (36%), Gaps = 12/163 (7%)
Query: 66 GSPGVSAQGGPLEGTP-RPAAPGAAPRPRRQR---LRRRRAKVGGWGCARARGLDR--RA 119
G PG GP EG P P +PG +P + + +G G GL +
Sbjct: 1089 GPPGHLGPAGP-EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGS 1147
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSR 177
PG G G + PG G G PRG R P P LPG
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPV---GVPSLRGRP 217
A G G RG G G PG GL GA +P G P RG P
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSP 1250
Score = 47.0 bits (110), Expect = 2e-05
Identities = 53/183 (28%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 66 GSPGVSAQGGP---------LEGTPRPAAPGAAPRPRRQR-LRRRRAKVGGWGCARARGL 115
G+PG + GP + G P P P P P+ + K G G G
Sbjct: 634 GAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDG- 692
Query: 116 DRRAPGEGGRSPGG--------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRV 167
+ PG G P G G + S G G +G + P + A MP
Sbjct: 693 EPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGP 752
Query: 168 LPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
P PG G G GLPG GLPG G +G + P G P G P E P
Sbjct: 753 GTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEG--LDGPRGDPGQPGPPGE----QGPP 806
Query: 228 RRC 230
RC
Sbjct: 807 GRC 809
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/191 (29%), Positives = 63/191 (32%), Gaps = 41/191 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR----APG 121
G PG GP + P PG+ P R LR G G RG + PG
Sbjct: 360 GPPGPRGARGPQGPSGPPGVPGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 122 EGGRSPGGGLEPSPGARGAVG------------------AAPAAARHRKPRGR-SRRAPQ 162
G + GL SPG G G +P P+G Q
Sbjct: 419 SPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQ 478
Query: 163 MPLRVLPPILPGL------------SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PP LPGL A G G G PG GLPG G GA G
Sbjct: 479 CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQ-----GD 533
Query: 211 PSLRGRPWEAL 221
P L+G E L
Sbjct: 534 PGLKGEKGETL 544
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/157 (29%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 66 GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQ-RLRRRRAKVGGWGCARARGLDRRAPGE 122
G PG+ Q G L+G P P P+ + L + G G + G +PG
Sbjct: 554 GDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPG----SPGP 609
Query: 123 GGRS--PGGGLEPSPGARGAVGA--APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G + PG G + PG +G G AP PRG + +P PP PG
Sbjct: 610 AGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGP 669
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G G G+ G PG G G P +G P G
Sbjct: 670 QGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG 706
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 35/156 (22%)
Query: 66 GSPGVSAQGGP-----LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
GSPG+ GP L T P PG P L + G G A +G +P
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKG----SP 513
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G G + G PGA+G G +P G+
Sbjct: 514 GSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQ------------------------ 549
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRG 215
G G PG RG PGR GL G P V G+P +G
Sbjct: 550 -VGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKG 584
Score = 42.7 bits (99), Expect = 3e-04
Identities = 54/184 (29%), Positives = 65/184 (35%), Gaps = 40/184 (21%)
Query: 56 CPAVRGCKRE-------GSPGVSAQGGPLEGTPRPAAPGAAPR-PRRQRLRRRRAKVGGW 107
C +G K E GSPG GP EG P P P P P + R G
Sbjct: 41 CDGAKGEKGEKGFPGPPGSPGQKGFTGP-EGLPGPQGPKGFPGLPGLTGSKGVRGISGLP 99
Query: 108 GCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------------AAPAAARHRKP 153
G + + GL PG G + GL PG G+ G P AA +
Sbjct: 100 GFSGSPGL----PGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 154 RGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
+G + + L A G G G PG +GLPG G G PP G P
Sbjct: 156 KGAPAKEEDIELD-----------AKGDPGLPGAPGPQGLPGPPGFPGPVGPP--GPPGF 202
Query: 214 RGRP 217
G P
Sbjct: 203 FGFP 206
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/102 (37%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
A GE G G SPG +G G P G PQ P P LPGL+ +
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTG----------PEGLP--GPQGPKGF--PGLPGLTGS 89
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRPWE 219
G G GLPG G PG G G P VGVP G E
Sbjct: 90 KGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGE 131
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/143 (31%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 59 VRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
VRG G PG S G L GTP P VG GC+ ++G ++
Sbjct: 92 VRGIS--GLPGFSGSPG-LPGTPGNTGPYGL--------------VGVPGCSGSKG-EQG 133
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
PG G G+ PGA G G A A+ ++ P +P P LPG
Sbjct: 134 FPGLPGTLGYPGI---PGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGF 190
Query: 179 GGATGGRGLPGRRGLPGRSGLQG 201
G G G PG G PG G +G
Sbjct: 191 PGPVGPPGPPGFFGFPGAMGPRG 213
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 42/185 (22%)
Query: 51 RRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
R S P V+G + G+PG + G +G P P+ +G G
Sbjct: 915 RGSPGIPGVKG--QRGTPGAKGEQGD-KGNPGPSEISHV--------------IGDKGEP 957
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGR--SRRAPQMP-LRV 167
+G PGE G G+ PG +G G P A PRG S P P LR
Sbjct: 958 GLKGFAGN-PGEKGNR---GVPGMPGLKGLKGL-PGPAGPPGPRGDLGSTGNPGEPGLRG 1012
Query: 168 LPPIL-----PGLSRAGGATGGRGLPGRRGLPGRSGLQG------------AAVPPPVGV 210
+P + PG G G G GR GLPG GLQG P P G
Sbjct: 1013 IPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGD 1072
Query: 211 PSLRG 215
P L G
Sbjct: 1073 PGLPG 1077
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 23/159 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAP-------GAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
G PG+ G L+G P PA P G+ P LR +G G ++G R
Sbjct: 973 GVPGMPGLKG-LKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKG-KRG 1030
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G GR+ GL G +G G +P P P P LPG
Sbjct: 1031 TLGFPGRAGRPGLPGIHGLQGDKG---------EPGYSEGTRPGPPGPTGDPGLPGDMGK 1081
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G PG G G G G+ G P L G+P
Sbjct: 1082 KGEMGQPGPPGHLGPAGPEGAPGSP-----GSPGLPGKP 1115
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 66 GSPGVSAQGGPLEGTPR--PAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G PG S G G+ + P PG +P + + G G RG +G
Sbjct: 271 GPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVP---GFPGSEGVKGNRGFPGLMGEDG 327
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRK------PRGRSRRAPQMPLRVLPPILPG--- 174
+ G + P PG RG P R R PQ P PP +PG
Sbjct: 328 IKGQKGDIGP-PGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG--PPGVPGSPG 384
Query: 175 -----LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L A G G +G G RG PG+ + P G P L G P
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP 432
Score = 35.8 bits (81), Expect = 0.040
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 68 PGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAPGE 122
PG + GP P APG P P + + G G +G D PG
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGP-PGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G GL G G G P P P+ P PG+ G
Sbjct: 1294 LGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGP--PGVRGDPGTL 1351
Query: 183 ---GGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G PG G PG G+QG PP P G P G+P
Sbjct: 1352 KIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKP 1399
Score = 35.4 bits (80), Expect = 0.053
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE-G 123
+G PG + GP P PG P PR G G +G ++ PG G
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPGL-PGPR--------GDPGFQGFPGVKG-EKGNPGFLG 1328
Query: 124 GRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
P G + P PG RG G + P P P P PG G
Sbjct: 1329 SIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPGPPG--TPGEPGMQGEPGPPGPPGNLGP 1386
Query: 182 TGGRGLPGRRGLPGRSGLQG 201
G RG PG+ G PG G G
Sbjct: 1387 CGPRGKPGKDGKPGTPGPAG 1406
Score = 32.3 bits (72), Expect = 0.45
Identities = 43/159 (27%), Positives = 49/159 (30%), Gaps = 43/159 (27%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG-------LDRR 118
G+PG GP G P P P P G +G A G + R
Sbjct: 177 GAPGPQGLPGP-PGFPGPVGPPGPP--------------GFFGFPGAMGPRGPKGHMGER 221
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G G GL PG G V +R L G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD------------------LKGEKGD 263
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G G PG GLPG S P G P L+G+P
Sbjct: 264 KGAMGEPGPPGPSGLPGESYGSEKGAP---GDPGLQGKP 299
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 173 PGLSRAGGATGGRGLPGRRGLPG-----RSGLQGAAVPPPV-GVPSLRGRPW-EALATAA 225
PG GA G +G G G+PG R GL+GA P + G RGRP +A+ T
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 226 TPRRCPLQLLRAGPALHCPP 245
+P L P PP
Sbjct: 419 SPGCAGSPGLPGSPGPPGPP 438
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 55.5 bits (132), Expect = 5e-08
Identities = 54/163 (33%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P G K E G PG GP P +PG+ P K G G +G+
Sbjct: 1076 PGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP---------GKPGPHGDLGFKGI 1126
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G R P G L PG+ G +G R P + LR PP G
Sbjct: 1127 KGLLGPPGIRGPPG-LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRA-PPGPRGN 1184
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRP 217
A GA G RG PG GLPGR G G A P P G+ G P
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Score = 51.6 bits (122), Expect = 7e-07
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 64 REGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
R+G+ G + GP +EG P P A P + G G +RG APG
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP---------GQTGNRGPPGSRG-SPGAPG 1254
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM--PLRVLPPILPGLSRAG 179
G PG + G +G++G H P+G A M P R+ P PGL
Sbjct: 1255 PPG-PPGSHVIGIKGDKGSMG-------HPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPR 1306
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
G G +G PG +G G G G+ PP P G P +RG P
Sbjct: 1307 GDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Score = 49.3 bits (116), Expect = 4e-06
Identities = 51/167 (30%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
SL CP G G PG G +G P A PG P R + G G
Sbjct: 719 SLGCPGKMG--EPGLPGKPGLPGA-KGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
GL PG G G PG G G + P GR P+ L
Sbjct: 776 PGL----PGTPGNEGLDGPRGDPGQPGPPG-------EQGPPGRCIEGPRGAQG-----L 819
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
PGL+ G G RG G +G PG GL + P G P + G E
Sbjct: 820 PGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGE 866
Score = 49.3 bits (116), Expect = 4e-06
Identities = 49/166 (29%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + GPL P PG P + +G G A G PG G
Sbjct: 859 GIPGHQGEMGPLGQRGYPGNPGILGPPGEDGV------IGMMGFPGAIG----PPGPPGN 908
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----PPILPGLSRAGGA 181
G SPG G G + + P V+ P L G + G
Sbjct: 909 PGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGE 968
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G RG+PG GL G GL G A PP G P LRG P
Sbjct: 969 KGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 48.9 bits (115), Expect = 5e-06
Identities = 52/163 (31%), Positives = 60/163 (36%), Gaps = 12/163 (7%)
Query: 66 GSPGVSAQGGPLEGTP-RPAAPGAAPRPRRQR---LRRRRAKVGGWGCARARGLDR--RA 119
G PG GP EG P P +PG +P + + +G G GL +
Sbjct: 1089 GPPGHLGPAGP-EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGS 1147
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSR 177
PG G G + PG G G PRG R P P LPG
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPV---GVPSLRGRP 217
A G G RG G G PG GL GA +P G P RG P
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSP 1250
Score = 47.0 bits (110), Expect = 2e-05
Identities = 53/183 (28%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 66 GSPGVSAQGGP---------LEGTPRPAAPGAAPRPRRQR-LRRRRAKVGGWGCARARGL 115
G+PG + GP + G P P P P P+ + K G G G
Sbjct: 634 GAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDG- 692
Query: 116 DRRAPGEGGRSPGG--------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRV 167
+ PG G P G G + S G G +G + P + A MP
Sbjct: 693 EPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGP 752
Query: 168 LPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
P PG G G GLPG GLPG G +G + P G P G P E P
Sbjct: 753 GTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEG--LDGPRGDPGQPGPPGE----QGPP 806
Query: 228 RRC 230
RC
Sbjct: 807 GRC 809
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/191 (29%), Positives = 63/191 (32%), Gaps = 41/191 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR----APG 121
G PG GP + P PG+ P R LR G G RG + PG
Sbjct: 360 GPPGPRGARGPQGPSGPPGVPGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 122 EGGRSPGGGLEPSPGARGAVG------------------AAPAAARHRKPRGR-SRRAPQ 162
G + GL SPG G G +P P+G Q
Sbjct: 419 SPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQ 478
Query: 163 MPLRVLPPILPGL------------SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PP LPGL A G G G PG GLPG G GA G
Sbjct: 479 CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQ-----GD 533
Query: 211 PSLRGRPWEAL 221
P L+G E L
Sbjct: 534 PGLKGEKGETL 544
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/157 (29%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 66 GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQ-RLRRRRAKVGGWGCARARGLDRRAPGE 122
G PG+ Q G L+G P P P+ + L + G G + G +PG
Sbjct: 554 GDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPG----SPGP 609
Query: 123 GGRS--PGGGLEPSPGARGAVGA--APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G + PG G + PG +G G AP PRG + +P PP PG
Sbjct: 610 AGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGP 669
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G G G+ G PG G G P +G P G
Sbjct: 670 QGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG 706
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 35/156 (22%)
Query: 66 GSPGVSAQGGP-----LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
GSPG+ GP L T P PG P L + G G A +G +P
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKG----SP 513
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G G + G PGA+G G +P G+
Sbjct: 514 GSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQ------------------------ 549
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRG 215
G G PG RG PGR GL G P V G+P +G
Sbjct: 550 -VGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKG 584
Score = 42.7 bits (99), Expect = 3e-04
Identities = 54/184 (29%), Positives = 65/184 (35%), Gaps = 40/184 (21%)
Query: 56 CPAVRGCKRE-------GSPGVSAQGGPLEGTPRPAAPGAAPR-PRRQRLRRRRAKVGGW 107
C +G K E GSPG GP EG P P P P P + R G
Sbjct: 41 CDGAKGEKGEKGFPGPPGSPGQKGFTGP-EGLPGPQGPKGFPGLPGLTGSKGVRGISGLP 99
Query: 108 GCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------------AAPAAARHRKP 153
G + + GL PG G + GL PG G+ G P AA +
Sbjct: 100 GFSGSPGL----PGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 154 RGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
+G + + L A G G G PG +GLPG G G PP G P
Sbjct: 156 KGAPAKEEDIELD-----------AKGDPGLPGAPGPQGLPGPPGFPGPVGPP--GPPGF 202
Query: 214 RGRP 217
G P
Sbjct: 203 FGFP 206
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/102 (37%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
A GE G G SPG +G G P G PQ P P LPGL+ +
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTG----------PEGLP--GPQGPKGF--PGLPGLTGS 89
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRPWE 219
G G GLPG G PG G G P VGVP G E
Sbjct: 90 KGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGE 131
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/143 (31%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 59 VRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
VRG G PG S G L GTP P VG GC+ ++G ++
Sbjct: 92 VRGIS--GLPGFSGSPG-LPGTPGNTGPYGL--------------VGVPGCSGSKG-EQG 133
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
PG G G+ PGA G G A A+ ++ P +P P LPG
Sbjct: 134 FPGLPGTLGYPGI---PGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGF 190
Query: 179 GGATGGRGLPGRRGLPGRSGLQG 201
G G G PG G PG G +G
Sbjct: 191 PGPVGPPGPPGFFGFPGAMGPRG 213
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 42/185 (22%)
Query: 51 RRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
R S P V+G + G+PG + G +G P P+ +G G
Sbjct: 915 RGSPGIPGVKG--QRGTPGAKGEQGD-KGNPGPSEISHV--------------IGDKGEP 957
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGR--SRRAPQMP-LRV 167
+G PGE G G+ PG +G G P A PRG S P P LR
Sbjct: 958 GLKGFAGN-PGEKGNR---GVPGMPGLKGLKGL-PGPAGPPGPRGDLGSTGNPGEPGLRG 1012
Query: 168 LPPIL-----PGLSRAGGATGGRGLPGRRGLPGRSGLQG------------AAVPPPVGV 210
+P + PG G G G GR GLPG GLQG P P G
Sbjct: 1013 IPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGD 1072
Query: 211 PSLRG 215
P L G
Sbjct: 1073 PGLPG 1077
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 23/159 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAP-------GAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
G PG+ G L+G P PA P G+ P LR +G G ++G R
Sbjct: 973 GVPGMPGLKG-LKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKG-KRG 1030
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G GR+ GL G +G G +P P P P LPG
Sbjct: 1031 TLGFPGRAGRPGLPGIHGLQGDKG---------EPGYSEGTRPGPPGPTGDPGLPGDMGK 1081
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G PG G G G G+ G P L G+P
Sbjct: 1082 KGEMGQPGPPGHLGPAGPEGAPGSP-----GSPGLPGKP 1115
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 66 GSPGVSAQGGPLEGTPR--PAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G PG S G G+ + P PG +P + + G G RG +G
Sbjct: 271 GPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVP---GFPGSEGVKGNRGFPGLMGEDG 327
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRK------PRGRSRRAPQMPLRVLPPILPG--- 174
+ G + P PG RG P R R PQ P PP +PG
Sbjct: 328 IKGQKGDIGP-PGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG--PPGVPGSPG 384
Query: 175 -----LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L A G G +G G RG PG+ + P G P L G P
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP 432
Score = 35.8 bits (81), Expect = 0.040
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 68 PGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAPGE 122
PG + GP P APG P P + + G G +G D PG
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGP-PGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G GL G G G P P P+ P PG+ G
Sbjct: 1294 LGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGP--PGVRGDPGTL 1351
Query: 183 ---GGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G PG G PG G+QG PP P G P G+P
Sbjct: 1352 KIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKP 1399
Score = 35.4 bits (80), Expect = 0.053
Identities = 42/145 (28%), Positives = 53/145 (36%), Gaps = 29/145 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V+G K G+PG GP P P P P R G G + L
Sbjct: 1315 PGVKGEK--GNPGFLGSIGP----PGPIGPKGPPGVR-----------GDPGTLKIISLP 1357
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+PG G G++ PG G G PRG+ P + P PG +
Sbjct: 1358 G-SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGK-------PGKDGKPGTPGPA 1405
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG 201
G G +G PG G G GL+G
Sbjct: 1406 GEKGNKGSKGEPGPAGSDGLPGLKG 1430
Score = 35.0 bits (79), Expect = 0.069
Identities = 46/164 (28%), Positives = 55/164 (33%), Gaps = 35/164 (21%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE-G 123
+G PG + GP P PG P PR G G +G ++ PG G
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPGL-PGPR--------GDPGFQGFPGVKG-EKGNPGFLG 1328
Query: 124 GRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
P G + P PG RG G + P PP PG G
Sbjct: 1329 SIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPG--------------PPGTPGEPGMQGE 1374
Query: 182 TGGRGLPGR------RGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G PG RG PG+ G G P P G +G E
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDGKPG--TPGPAGEKGNKGSKGE 1416
Score = 32.3 bits (72), Expect = 0.45
Identities = 43/159 (27%), Positives = 49/159 (30%), Gaps = 43/159 (27%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG-------LDRR 118
G+PG GP G P P P P G +G A G + R
Sbjct: 177 GAPGPQGLPGP-PGFPGPVGPPGPP--------------GFFGFPGAMGPRGPKGHMGER 221
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G G GL PG G V +R L G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD------------------LKGEKGD 263
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G G PG GLPG S P G P L+G+P
Sbjct: 264 KGAMGEPGPPGPSGLPGESYGSEKGAP---GDPGLQGKP 299
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 173 PGLSRAGGATGGRGLPGRRGLPG-----RSGLQGAAVPPPV-GVPSLRGRPW-EALATAA 225
PG GA G +G G G+PG R GL+GA P + G RGRP +A+ T
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 226 TPRRCPLQLLRAGPALHCPP 245
+P L P PP
Sbjct: 419 SPGCAGSPGLPGSPGPPGPP 438
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 55.5 bits (132), Expect = 5e-08
Identities = 54/163 (33%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P G K E G PG GP P +PG+ P K G G +G+
Sbjct: 1076 PGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP---------GKPGPHGDLGFKGI 1126
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G R P G L PG+ G +G R P + LR PP G
Sbjct: 1127 KGLLGPPGIRGPPG-LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRA-PPGPRGN 1184
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRP 217
A GA G RG PG GLPGR G G A P P G+ G P
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Score = 51.6 bits (122), Expect = 7e-07
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 64 REGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
R+G+ G + GP +EG P P A P + G G +RG APG
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP---------GQTGNRGPPGSRG-SPGAPG 1254
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM--PLRVLPPILPGLSRAG 179
G PG + G +G++G H P+G A M P R+ P PGL
Sbjct: 1255 PPG-PPGSHVIGIKGDKGSMG-------HPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPR 1306
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
G G +G PG +G G G G+ PP P G P +RG P
Sbjct: 1307 GDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Score = 49.3 bits (116), Expect = 4e-06
Identities = 51/167 (30%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
SL CP G G PG G +G P A PG P R + G G
Sbjct: 719 SLGCPGKMG--EPGLPGKPGLPGA-KGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
GL PG G G PG G G + P GR P+ L
Sbjct: 776 PGL----PGTPGNEGLDGPRGDPGQPGPPG-------EQGPPGRCIEGPRGAQG-----L 819
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
PGL+ G G RG G +G PG GL + P G P + G E
Sbjct: 820 PGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGE 866
Score = 49.3 bits (116), Expect = 4e-06
Identities = 49/166 (29%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + GPL P PG P + +G G A G PG G
Sbjct: 859 GIPGHQGEMGPLGQRGYPGNPGILGPPGEDGV------IGMMGFPGAIG----PPGPPGN 908
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----PPILPGLSRAGGA 181
G SPG G G + + P V+ P L G + G
Sbjct: 909 PGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGE 968
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G RG+PG GL G GL G A PP G P LRG P
Sbjct: 969 KGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 48.9 bits (115), Expect = 5e-06
Identities = 52/163 (31%), Positives = 60/163 (36%), Gaps = 12/163 (7%)
Query: 66 GSPGVSAQGGPLEGTP-RPAAPGAAPRPRRQR---LRRRRAKVGGWGCARARGLDR--RA 119
G PG GP EG P P +PG +P + + +G G GL +
Sbjct: 1089 GPPGHLGPAGP-EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGS 1147
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSR 177
PG G G + PG G G PRG R P P LPG
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPV---GVPSLRGRP 217
A G G RG G G PG GL GA +P G P RG P
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSP 1250
Score = 47.0 bits (110), Expect = 2e-05
Identities = 53/183 (28%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 66 GSPGVSAQGGP---------LEGTPRPAAPGAAPRPRRQR-LRRRRAKVGGWGCARARGL 115
G+PG + GP + G P P P P P+ + K G G G
Sbjct: 634 GAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDG- 692
Query: 116 DRRAPGEGGRSPGG--------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRV 167
+ PG G P G G + S G G +G + P + A MP
Sbjct: 693 EPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGP 752
Query: 168 LPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
P PG G G GLPG GLPG G +G + P G P G P E P
Sbjct: 753 GTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEG--LDGPRGDPGQPGPPGE----QGPP 806
Query: 228 RRC 230
RC
Sbjct: 807 GRC 809
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/191 (29%), Positives = 63/191 (32%), Gaps = 41/191 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR----APG 121
G PG GP + P PG+ P R LR G G RG + PG
Sbjct: 360 GPPGPRGARGPQGPSGPPGVPGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 122 EGGRSPGGGLEPSPGARGAVG------------------AAPAAARHRKPRGR-SRRAPQ 162
G + GL SPG G G +P P+G Q
Sbjct: 419 SPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQ 478
Query: 163 MPLRVLPPILPGL------------SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PP LPGL A G G G PG GLPG G GA G
Sbjct: 479 CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQ-----GD 533
Query: 211 PSLRGRPWEAL 221
P L+G E L
Sbjct: 534 PGLKGEKGETL 544
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/157 (29%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 66 GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQ-RLRRRRAKVGGWGCARARGLDRRAPGE 122
G PG+ Q G L+G P P P+ + L + G G + G +PG
Sbjct: 554 GDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPG----SPGP 609
Query: 123 GGRS--PGGGLEPSPGARGAVGA--APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G + PG G + PG +G G AP PRG + +P PP PG
Sbjct: 610 AGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGP 669
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G G G+ G PG G G P +G P G
Sbjct: 670 QGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG 706
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 35/156 (22%)
Query: 66 GSPGVSAQGGP-----LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
GSPG+ GP L T P PG P L + G G A +G +P
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKG----SP 513
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G G + G PGA+G G +P G+
Sbjct: 514 GSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQ------------------------ 549
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRG 215
G G PG RG PGR GL G P V G+P +G
Sbjct: 550 -VGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKG 584
Score = 42.7 bits (99), Expect = 3e-04
Identities = 54/184 (29%), Positives = 65/184 (35%), Gaps = 40/184 (21%)
Query: 56 CPAVRGCKRE-------GSPGVSAQGGPLEGTPRPAAPGAAPR-PRRQRLRRRRAKVGGW 107
C +G K E GSPG GP EG P P P P P + R G
Sbjct: 41 CDGAKGEKGEKGFPGPPGSPGQKGFTGP-EGLPGPQGPKGFPGLPGLTGSKGVRGISGLP 99
Query: 108 GCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------------AAPAAARHRKP 153
G + + GL PG G + GL PG G+ G P AA +
Sbjct: 100 GFSGSPGL----PGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 154 RGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
+G + + L A G G G PG +GLPG G G PP G P
Sbjct: 156 KGAPAKEEDIELD-----------AKGDPGLPGAPGPQGLPGPPGFPGPVGPP--GPPGF 202
Query: 214 RGRP 217
G P
Sbjct: 203 FGFP 206
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/102 (37%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
A GE G G SPG +G G P G PQ P P LPGL+ +
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTG----------PEGLP--GPQGPKGF--PGLPGLTGS 89
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRPWE 219
G G GLPG G PG G G P VGVP G E
Sbjct: 90 KGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGE 131
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/143 (31%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 59 VRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
VRG G PG S G L GTP P VG GC+ ++G ++
Sbjct: 92 VRGIS--GLPGFSGSPG-LPGTPGNTGPYGL--------------VGVPGCSGSKG-EQG 133
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
PG G G+ PGA G G A A+ ++ P +P P LPG
Sbjct: 134 FPGLPGTLGYPGI---PGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGF 190
Query: 179 GGATGGRGLPGRRGLPGRSGLQG 201
G G G PG G PG G +G
Sbjct: 191 PGPVGPPGPPGFFGFPGAMGPRG 213
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 42/185 (22%)
Query: 51 RRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
R S P V+G + G+PG + G +G P P+ +G G
Sbjct: 915 RGSPGIPGVKG--QRGTPGAKGEQGD-KGNPGPSEISHV--------------IGDKGEP 957
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGR--SRRAPQMP-LRV 167
+G PGE G G+ PG +G G P A PRG S P P LR
Sbjct: 958 GLKGFAGN-PGEKGNR---GVPGMPGLKGLKGL-PGPAGPPGPRGDLGSTGNPGEPGLRG 1012
Query: 168 LPPIL-----PGLSRAGGATGGRGLPGRRGLPGRSGLQG------------AAVPPPVGV 210
+P + PG G G G GR GLPG GLQG P P G
Sbjct: 1013 IPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGD 1072
Query: 211 PSLRG 215
P L G
Sbjct: 1073 PGLPG 1077
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 23/159 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAP-------GAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
G PG+ G L+G P PA P G+ P LR +G G ++G R
Sbjct: 973 GVPGMPGLKG-LKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKG-KRG 1030
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G GR+ GL G +G G +P P P P LPG
Sbjct: 1031 TLGFPGRAGRPGLPGIHGLQGDKG---------EPGYSEGTRPGPPGPTGDPGLPGDMGK 1081
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G PG G G G G+ G P L G+P
Sbjct: 1082 KGEMGQPGPPGHLGPAGPEGAPGSP-----GSPGLPGKP 1115
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 66 GSPGVSAQGGPLEGTPR--PAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G PG S G G+ + P PG +P + + G G RG +G
Sbjct: 271 GPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVP---GFPGSEGVKGNRGFPGLMGEDG 327
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRK------PRGRSRRAPQMPLRVLPPILPG--- 174
+ G + P PG RG P R R PQ P PP +PG
Sbjct: 328 IKGQKGDIGP-PGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG--PPGVPGSPG 384
Query: 175 -----LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L A G G +G G RG PG+ + P G P L G P
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP 432
Score = 35.8 bits (81), Expect = 0.040
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 68 PGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAPGE 122
PG + GP P APG P P + + G G +G D PG
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGP-PGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G GL G G G P P P+ P PG+ G
Sbjct: 1294 LGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGP--PGVRGDPGTL 1351
Query: 183 ---GGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G PG G PG G+QG PP P G P G+P
Sbjct: 1352 KIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKP 1399
Score = 35.4 bits (80), Expect = 0.053
Identities = 42/145 (28%), Positives = 53/145 (36%), Gaps = 29/145 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V+G K G+PG GP P P P P R G G + L
Sbjct: 1315 PGVKGEK--GNPGFLGSIGP----PGPIGPKGPPGVR-----------GDPGTLKIISLP 1357
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+PG G G++ PG G G PRG+ P + P PG +
Sbjct: 1358 G-SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGK-------PGKDGKPGTPGPA 1405
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG 201
G G +G PG G G GL+G
Sbjct: 1406 GEKGNKGSKGEPGPAGSDGLPGLKG 1430
Score = 35.0 bits (79), Expect = 0.069
Identities = 46/164 (28%), Positives = 55/164 (33%), Gaps = 35/164 (21%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE-G 123
+G PG + GP P PG P PR G G +G ++ PG G
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPGL-PGPR--------GDPGFQGFPGVKG-EKGNPGFLG 1328
Query: 124 GRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
P G + P PG RG G + P PP PG G
Sbjct: 1329 SIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPG--------------PPGTPGEPGMQGE 1374
Query: 182 TGGRGLPGR------RGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G PG RG PG+ G G P P G +G E
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDGKPG--TPGPAGEKGNKGSKGE 1416
Score = 32.3 bits (72), Expect = 0.45
Identities = 43/159 (27%), Positives = 49/159 (30%), Gaps = 43/159 (27%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG-------LDRR 118
G+PG GP G P P P P G +G A G + R
Sbjct: 177 GAPGPQGLPGP-PGFPGPVGPPGPP--------------GFFGFPGAMGPRGPKGHMGER 221
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G G GL PG G V +R L G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD------------------LKGEKGD 263
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G G PG GLPG S P G P L+G+P
Sbjct: 264 KGAMGEPGPPGPSGLPGESYGSEKGAP---GDPGLQGKP 299
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 173 PGLSRAGGATGGRGLPGRRGLPG-----RSGLQGAAVPPPV-GVPSLRGRPW-EALATAA 225
PG GA G +G G G+PG R GL+GA P + G RGRP +A+ T
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 226 TPRRCPLQLLRAGPALHCPP 245
+P L P PP
Sbjct: 419 SPGCAGSPGLPGSPGPPGPP 438
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 55.5 bits (132), Expect = 5e-08
Identities = 54/163 (33%), Positives = 62/163 (38%), Gaps = 13/163 (7%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P G K E G PG GP P +PG+ P K G G +G+
Sbjct: 1076 PGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLP---------GKPGPHGDLGFKGI 1126
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
G R P G L PG+ G +G R P + LR PP G
Sbjct: 1127 KGLLGPPGIRGPPG-LPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRA-PPGPRGN 1184
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRP 217
A GA G RG PG GLPGR G G A P P G+ G P
Sbjct: 1185 PGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP 1227
Score = 51.6 bits (122), Expect = 7e-07
Identities = 52/162 (32%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 64 REGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
R+G+ G + GP +EG P P A P + G G +RG APG
Sbjct: 1205 RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIP---------GQTGNRGPPGSRG-SPGAPG 1254
Query: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQM--PLRVLPPILPGLSRAG 179
G PG + G +G++G H P+G A M P R+ P PGL
Sbjct: 1255 PPG-PPGSHVIGIKGDKGSMG-------HPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPR 1306
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
G G +G PG +G G G G+ PP P G P +RG P
Sbjct: 1307 GDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Score = 49.3 bits (116), Expect = 4e-06
Identities = 51/167 (30%), Positives = 59/167 (35%), Gaps = 19/167 (11%)
Query: 53 SLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
SL CP G G PG G +G P A PG P R + G G
Sbjct: 719 SLGCPGKMG--EPGLPGKPGLPGA-KGEPAVAMPGGPGTPGFPGERGNSGEHGEIGLPGL 775
Query: 113 RGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPIL 172
GL PG G G PG G G + P GR P+ L
Sbjct: 776 PGL----PGTPGNEGLDGPRGDPGQPGPPG-------EQGPPGRCIEGPRGAQG-----L 819
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
PGL+ G G RG G +G PG GL + P G P + G E
Sbjct: 820 PGLNGLKGQQGRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGE 866
Score = 49.3 bits (116), Expect = 4e-06
Identities = 49/166 (29%), Positives = 57/166 (34%), Gaps = 24/166 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + GPL P PG P + +G G A G PG G
Sbjct: 859 GIPGHQGEMGPLGQRGYPGNPGILGPPGEDGV------IGMMGFPGAIG----PPGPPGN 908
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL----PPILPGLSRAGGA 181
G SPG G G + + P V+ P L G + G
Sbjct: 909 PGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGE 968
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G RG+PG GL G GL G A PP G P LRG P
Sbjct: 969 KGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIP 1014
Score = 48.9 bits (115), Expect = 5e-06
Identities = 52/163 (31%), Positives = 60/163 (36%), Gaps = 12/163 (7%)
Query: 66 GSPGVSAQGGPLEGTP-RPAAPGAAPRPRRQR---LRRRRAKVGGWGCARARGLDR--RA 119
G PG GP EG P P +PG +P + + +G G GL +
Sbjct: 1089 GPPGHLGPAGP-EGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGS 1147
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSR 177
PG G G + PG G G PRG R P P LPG
Sbjct: 1148 PGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPV---GVPSLRGRP 217
A G G RG G G PG GL GA +P G P RG P
Sbjct: 1208 AMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSP 1250
Score = 47.0 bits (110), Expect = 2e-05
Identities = 53/183 (28%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 66 GSPGVSAQGGP---------LEGTPRPAAPGAAPRPRRQR-LRRRRAKVGGWGCARARGL 115
G+PG + GP + G P P P P P+ + K G G G
Sbjct: 634 GAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDG- 692
Query: 116 DRRAPGEGGRSPGG--------GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRV 167
+ PG G P G G + S G G +G + P + A MP
Sbjct: 693 EPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGP 752
Query: 168 LPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
P PG G G GLPG GLPG G +G + P G P G P E P
Sbjct: 753 GTPGFPGERGNSGEHGEIGLPGLPGLPGTPGNEG--LDGPRGDPGQPGPPGE----QGPP 806
Query: 228 RRC 230
RC
Sbjct: 807 GRC 809
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/191 (29%), Positives = 63/191 (32%), Gaps = 41/191 (21%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR----APG 121
G PG GP + P PG+ P R LR G G RG + PG
Sbjct: 360 GPPGPRGARGPQGPSGPPGVPGS-PGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 122 EGGRSPGGGLEPSPGARGAVG------------------AAPAAARHRKPRGR-SRRAPQ 162
G + GL SPG G G +P P+G Q
Sbjct: 419 SPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQ 478
Query: 163 MPLRVLPPILPGL------------SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGV 210
P PP LPGL A G G G PG GLPG G GA G
Sbjct: 479 CPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQ-----GD 533
Query: 211 PSLRGRPWEAL 221
P L+G E L
Sbjct: 534 PGLKGEKGETL 544
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/157 (29%), Positives = 61/157 (38%), Gaps = 11/157 (7%)
Query: 66 GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQ-RLRRRRAKVGGWGCARARGLDRRAPGE 122
G PG+ Q G L+G P P P+ + L + G G + G +PG
Sbjct: 554 GDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPG----SPGP 609
Query: 123 GGRS--PGGGLEPSPGARGAVGA--APAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G + PG G + PG +G G AP PRG + +P PP PG
Sbjct: 610 AGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGP 669
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G G G+ G PG G G P +G P G
Sbjct: 670 QGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPG 706
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 35/156 (22%)
Query: 66 GSPGVSAQGGP-----LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAP 120
GSPG+ GP L T P PG P L + G G A +G +P
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGRQGAAGLKG----SP 513
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
G G + G PGA+G G +P G+
Sbjct: 514 GSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQ------------------------ 549
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRG 215
G G PG RG PGR GL G P V G+P +G
Sbjct: 550 -VGVPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKG 584
Score = 42.7 bits (99), Expect = 3e-04
Identities = 54/184 (29%), Positives = 65/184 (35%), Gaps = 40/184 (21%)
Query: 56 CPAVRGCKRE-------GSPGVSAQGGPLEGTPRPAAPGAAPR-PRRQRLRRRRAKVGGW 107
C +G K E GSPG GP EG P P P P P + R G
Sbjct: 41 CDGAKGEKGEKGFPGPPGSPGQKGFTGP-EGLPGPQGPKGFPGLPGLTGSKGVRGISGLP 99
Query: 108 GCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVG--------------AAPAAARHRKP 153
G + + GL PG G + GL PG G+ G P AA +
Sbjct: 100 GFSGSPGL----PGTPGNTGPYGLVGVPGCSGSKGEQGFPGLPGTLGYPGIPGAAGLKGQ 155
Query: 154 RGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
+G + + L A G G G PG +GLPG G G PP G P
Sbjct: 156 KGAPAKEEDIELD-----------AKGDPGLPGAPGPQGLPGPPGFPGPVGPP--GPPGF 202
Query: 214 RGRP 217
G P
Sbjct: 203 FGFP 206
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/102 (37%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
A GE G G SPG +G G P G PQ P P LPGL+ +
Sbjct: 44 AKGEKGEKGFPGPPGSPGQKGFTG----------PEGLP--GPQGPKGF--PGLPGLTGS 89
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVP-PPVGVPSLRGRPWE 219
G G GLPG G PG G G P VGVP G E
Sbjct: 90 KGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCSGSKGE 131
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/143 (31%), Positives = 56/143 (39%), Gaps = 21/143 (14%)
Query: 59 VRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
VRG G PG S G L GTP P VG GC+ ++G ++
Sbjct: 92 VRGIS--GLPGFSGSPG-LPGTPGNTGPYGL--------------VGVPGCSGSKG-EQG 133
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
PG G G+ PGA G G A A+ ++ P +P P LPG
Sbjct: 134 FPGLPGTLGYPGI---PGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGF 190
Query: 179 GGATGGRGLPGRRGLPGRSGLQG 201
G G G PG G PG G +G
Sbjct: 191 PGPVGPPGPPGFFGFPGAMGPRG 213
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/185 (30%), Positives = 68/185 (36%), Gaps = 42/185 (22%)
Query: 51 RRSLACPAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCA 110
R S P V+G + G+PG + G +G P P+ +G G
Sbjct: 915 RGSPGIPGVKG--QRGTPGAKGEQGD-KGNPGPSEISHV--------------IGDKGEP 957
Query: 111 RARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGR--SRRAPQMP-LRV 167
+G PGE G G+ PG +G G P A PRG S P P LR
Sbjct: 958 GLKGFAGN-PGEKGNR---GVPGMPGLKGLKGL-PGPAGPPGPRGDLGSTGNPGEPGLRG 1012
Query: 168 LPPIL-----PGLSRAGGATGGRGLPGRRGLPGRSGLQG------------AAVPPPVGV 210
+P + PG G G G GR GLPG GLQG P P G
Sbjct: 1013 IPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGD 1072
Query: 211 PSLRG 215
P L G
Sbjct: 1073 PGLPG 1077
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 23/159 (14%)
Query: 66 GSPGVSAQGGPLEGTPRPAAP-------GAAPRPRRQRLRRRRAKVGGWGCARARGLDRR 118
G PG+ G L+G P PA P G+ P LR +G G ++G R
Sbjct: 973 GVPGMPGLKG-LKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKG-KRG 1030
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G GR+ GL G +G G +P P P P LPG
Sbjct: 1031 TLGFPGRAGRPGLPGIHGLQGDKG---------EPGYSEGTRPGPPGPTGDPGLPGDMGK 1081
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G PG G G G G+ G P L G+P
Sbjct: 1082 KGEMGQPGPPGHLGPAGPEGAPGSP-----GSPGLPGKP 1115
Score = 39.3 bits (90), Expect = 0.004
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 66 GSPGVSAQGGPLEGTPR--PAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G PG S G G+ + P PG +P + + G G RG +G
Sbjct: 271 GPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVP---GFPGSEGVKGNRGFPGLMGEDG 327
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRK------PRGRSRRAPQMPLRVLPPILPG--- 174
+ G + P PG RG P R R PQ P PP +PG
Sbjct: 328 IKGQKGDIGP-PGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG--PPGVPGSPG 384
Query: 175 -----LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L A G G +G G RG PG+ + P G P L G P
Sbjct: 385 SSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSP 432
Score = 35.8 bits (81), Expect = 0.040
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 68 PGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL-----DRRAPGE 122
PG + GP P APG P P + + G G +G D PG
Sbjct: 1235 PGQTGNRGPPGSRGSPGAPGP-PGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
G GL G G G P P P+ P PG+ G
Sbjct: 1294 LGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGP--PGVRGDPGTL 1351
Query: 183 ---GGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRGRP 217
G PG G PG G+QG PP P G P G+P
Sbjct: 1352 KIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKP 1399
Score = 35.4 bits (80), Expect = 0.053
Identities = 42/145 (28%), Positives = 53/145 (36%), Gaps = 29/145 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V+G K G+PG GP P P P P R G G + L
Sbjct: 1315 PGVKGEK--GNPGFLGSIGP----PGPIGPKGPPGVR-----------GDPGTLKIISLP 1357
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+PG G G++ PG G G PRG+ P + P PG +
Sbjct: 1358 G-SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG----PRGK-------PGKDGKPGTPGPA 1405
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG 201
G G +G PG G G GL+G
Sbjct: 1406 GEKGNKGSKGEPGPAGSDGLPGLKG 1430
Score = 35.0 bits (79), Expect = 0.069
Identities = 46/164 (28%), Positives = 55/164 (33%), Gaps = 35/164 (21%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE-G 123
+G PG + GP P PG P PR G G +G ++ PG G
Sbjct: 1279 KGPPGTAGDMGPPGRLGAPGTPGL-PGPR--------GDPGFQGFPGVKG-EKGNPGFLG 1328
Query: 124 GRSPGGGLEPS--PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
P G + P PG RG G + P PP PG G
Sbjct: 1329 SIGPPGPIGPKGPPGVRGDPGTLKIISLPGSPG--------------PPGTPGEPGMQGE 1374
Query: 182 TGGRGLPGR------RGLPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G PG RG PG+ G G P P G +G E
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDGKPG--TPGPAGEKGNKGSKGE 1416
Score = 32.3 bits (72), Expect = 0.45
Identities = 43/159 (27%), Positives = 49/159 (30%), Gaps = 43/159 (27%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG-------LDRR 118
G+PG GP G P P P P G +G A G + R
Sbjct: 177 GAPGPQGLPGP-PGFPGPVGPPGPP--------------GFFGFPGAMGPRGPKGHMGER 221
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
G G GL PG G V +R L G
Sbjct: 222 VIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTD------------------LKGEKGD 263
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
GA G G PG GLPG S P G P L+G+P
Sbjct: 264 KGAMGEPGPPGPSGLPGESYGSEKGAP---GDPGLQGKP 299
Score = 30.4 bits (67), Expect = 1.7
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 173 PGLSRAGGATGGRGLPGRRGLPG-----RSGLQGAAVPPPV-GVPSLRGRPW-EALATAA 225
PG GA G +G G G+PG R GL+GA P + G RGRP +A+ T
Sbjct: 359 PGPPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPG 418
Query: 226 TPRRCPLQLLRAGPALHCPP 245
+P L P PP
Sbjct: 419 SPGCAGSPGLPGSPGPPGPP 438
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 55.5 bits (132), Expect = 5e-08
Identities = 51/163 (31%), Positives = 63/163 (38%), Gaps = 8/163 (4%)
Query: 70 VSAQGGPLEGTPRPAAPGAAP-RPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPG 128
++A G G P P P P +P + + G G +G APG+ G+
Sbjct: 20 LAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKG----APGKPGKPGE 75
Query: 129 GGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLP 188
GL PG G G P R P P + LPG G +G G
Sbjct: 76 AGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGI 135
Query: 189 GRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATPRRCP 231
G RG PG SGL G +P P G P G P L AT +CP
Sbjct: 136 GLRGPPGPSGLPG--LPGPPGPPGPPGHP-GVLPEGATDLQCP 175
Score = 47.0 bits (110), Expect = 2e-05
Identities = 56/185 (30%), Positives = 67/185 (36%), Gaps = 37/185 (20%)
Query: 54 LACPAVRGCKREGSPGVSAQGGPL--------------EGTPRPAAPGAAPRPRRQRLRR 99
L CP++ G PG+ GP +G P P P P
Sbjct: 172 LQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLP--------- 222
Query: 100 RRAKVGGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRR 159
VG G RGL G R P G P PG GA G A R P G R
Sbjct: 223 --GSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGP-PGIPGAPGKAGDRGE-RGPEGF--R 276
Query: 160 APQMPL-RVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAA-------VPPPVGVP 211
P+ L R P PG++ G G G G+ G+PG G +G A P G+P
Sbjct: 277 GPKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLP 336
Query: 212 SLRGR 216
L GR
Sbjct: 337 GLPGR 341
Score = 42.7 bits (99), Expect = 3e-04
Identities = 45/153 (29%), Positives = 57/153 (37%), Gaps = 29/153 (18%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G G + GP +GTP A P P G G G+ PG G+
Sbjct: 277 GPKGDLGRPGP-KGTPGVAGPSGEP--------------GMPGKDGQNGV----PGLDGQ 317
Query: 126 SPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
G +PG +G G P A + +G RA ++ G S G G
Sbjct: 318 KGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEA-------GPSGEPGVPG 370
Query: 184 GRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G+PG RG G G GA P P G P +RG
Sbjct: 371 DAGMPGERGEAGHRGSAGALGPQGPPGAPGVRG 403
Score = 42.7 bits (99), Expect = 3e-04
Identities = 50/175 (28%), Positives = 64/175 (36%), Gaps = 14/175 (8%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P G K E G G + + G + P PG A P + R G G G
Sbjct: 339 PGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGA 398
Query: 116 D--RRAPGEGGRSPGGGLEPSPGARGAVG----AAPAAARHRKPRGRSRRAPQMPLRVLP 169
R G+ G GL G RG VG A + + S P + P
Sbjct: 399 PGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGP 458
Query: 170 PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-PV------GVPSLRGRP 217
L G G+ G G G +G G SG+QG PP P+ GVP + G+P
Sbjct: 459 SGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKP 513
Score = 42.4 bits (98), Expect = 4e-04
Identities = 48/127 (37%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 82 RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGL-EPSP----G 136
+P APG+ RP G G ARG G R P G L +P P G
Sbjct: 546 KPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARG------PPGYRGPTGELGDPGPRGNQG 599
Query: 137 ARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG--GATGGRGLPGRRGLP 194
RG GAA A P G + PQ P V PG S+ G GA G G PG GLP
Sbjct: 600 DRGDKGAAGAGLDG--PEGD--QGPQGPQGV-----PGTSKDGQDGAPGEPGPPGDPGLP 650
Query: 195 GRSGLQG 201
G G QG
Sbjct: 651 GAIGAQG 657
Score = 42.0 bits (97), Expect = 6e-04
Identities = 50/144 (34%), Positives = 56/144 (38%), Gaps = 25/144 (17%)
Query: 66 GSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
G PG GP L G P P P P R G G A RG R P EG
Sbjct: 220 GLPGSVGLQGPRGLRGLPGPLGPPGDRGPIG--FRGPPGIPGAPGKAGDRG--ERGP-EG 274
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
R P G L PG +G G A P G P MP + +PGL G G
Sbjct: 275 FRGPKGDLG-RPGPKGTPGVAG-------PSGE----PGMPGKDGQNGVPGLDGQKGEAG 322
Query: 184 GRGLPGRR------GLPGRSGLQG 201
G PG + GLPGR+G +G
Sbjct: 323 RNGAPGEKGPNGLPGLPGRAGSKG 346
Score = 38.1 bits (87), Expect = 0.008
Identities = 44/160 (27%), Positives = 52/160 (32%), Gaps = 8/160 (5%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P + G G PG + GP G PG + P G G D
Sbjct: 112 PGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATD 171
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+ P P G PG +G G K + P P LPG
Sbjct: 172 LQCPSICPPGPPGP-PGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGPAG-----LPGSV 225
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGR 216
G G RGLPG G PG G G PP G+P G+
Sbjct: 226 GLQGPRGLRGLPGPLGPPGDRGPIGFRGPP--GIPGAPGK 263
Score = 38.1 bits (87), Expect = 0.008
Identities = 44/147 (29%), Positives = 54/147 (36%), Gaps = 39/147 (26%)
Query: 64 REGSPGVSAQ-------GGPLEGTPR--PAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
+ G PG+ Q G P E P P PG A + R R ++G G + G
Sbjct: 308 QNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPSGEPG 367
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
+ PG+ G PG RG G HR G PQ P PG
Sbjct: 368 V----PGDAGM---------PGERGEAG-------HRGSAGAL--GPQGP--------PG 397
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQG 201
G G +G G GLPG GL+G
Sbjct: 398 APGVRGFQGQKGSMGDPGLPGPQGLRG 424
Score = 37.4 bits (85), Expect = 0.014
Identities = 54/183 (29%), Positives = 65/183 (35%), Gaps = 25/183 (13%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRP----RRQRLRRRRAKVGGWGCARARGLDRR--- 118
G GV GPL P PG +P + +R R GG + L
Sbjct: 487 GVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRK 546
Query: 119 --APGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRGR----SRRAPQMPLRVLPP 170
APG GR G PG G++G A +R P G R Q
Sbjct: 547 PLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGA 606
Query: 171 ILPGLSRAGGATGGRGLPGRRGLPGRS--GLQGA-AVPPPVGVPSLRGRPWEALATAATP 227
GL G G +G G +G+PG S G GA P P G P L G A+ TP
Sbjct: 607 AGAGLD---GPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPG----AIGAQGTP 659
Query: 228 RRC 230
C
Sbjct: 660 GIC 662
Score = 33.1 bits (74), Expect = 0.26
Identities = 52/203 (25%), Positives = 69/203 (33%), Gaps = 49/203 (24%)
Query: 57 PAVRGCK-REGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQR-------LRRRRAKVGG 106
P VRG + ++GS G GP L G PG A P+ + L + ++G
Sbjct: 399 PGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGP 458
Query: 107 WGCARARGLD--------RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSR 158
G +G + G G S G+ PG G G KP +
Sbjct: 459 SGLVGPKGESGSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGK 518
Query: 159 RAPQMPLRVL-----------------PPILPG-LSRAG--------GATGGRGLPGRRG 192
A + +R L P+ PG + R G G G G PG RG
Sbjct: 519 EASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARG 578
Query: 193 LPGRSGLQGAAVPPPVGVPSLRG 215
PG G G +G P RG
Sbjct: 579 PPGYRGPTG-----ELGDPGPRG 596
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 55.1 bits (131), Expect = 6e-08
Identities = 49/166 (29%), Positives = 60/166 (36%), Gaps = 50/166 (30%)
Query: 53 SLACPAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCAR 111
S CP G E G PG+ GP RP PG++ P GC
Sbjct: 1092 SPGCPGHFGASGEQGLPGIQ---GPRGSPGRPGPPGSSGPP---------------GCPG 1133
Query: 112 ARGLD--RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP 169
G+ R PGE G GL+ PG G P
Sbjct: 1134 DHGMPGLRGQPGEMGDPGPRGLQGDPGIPG-----------------------------P 1164
Query: 170 PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
P + G S + G G GL G++G G SGL P PVG+P L+G
Sbjct: 1165 PGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKG 1210
Score = 52.4 bits (124), Expect = 4e-07
Identities = 52/157 (33%), Positives = 58/157 (36%), Gaps = 10/157 (6%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + G T P PG P R K G G +RG G G
Sbjct: 98 GPPGAAGDKGDKGPTGVPGFPGLDGIPGHPGPPGPRGKPGMSGHNGSRGDPGFPGGRGAL 157
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
PGG L PG +G G + K R P +P LPG AGG G
Sbjct: 158 GPGGPLG-HPGEKGEKGNSVFILGAVKGIQGDRGDPGLPG------LPGSWGAGGPAGPT 210
Query: 186 GLPGRRGL---PGRSGLQGAAVPPPVGVPSLRGRPWE 219
G PG GL PG+ G G P VGV G P E
Sbjct: 211 GYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPGE 247
Score = 52.0 bits (123), Expect = 5e-07
Identities = 60/189 (31%), Positives = 68/189 (35%), Gaps = 31/189 (16%)
Query: 56 CPAVRGCKR-EGSPGVSAQGGP--LEGTPR-PAAPGAAPRPRRQRLRRRRAKVGGWGCAR 111
CP G G PG GP L+G P P PG L G G
Sbjct: 1131 CPGDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKG 1190
Query: 112 ARGLDRRAP----------GEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRR 159
A GL P GE G G+ P PG RG G P ++ P G + R
Sbjct: 1191 ASGLHDVGPPGPVGIPGLKGERGDPGSPGISP-PGPRGKKGPPGPPGSSGPPGPAGATGR 1249
Query: 160 APQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGR----------SGLQGAAVPP-PV 208
AP+ + P PG G G RG PG GLPG GL G PP P
Sbjct: 1250 APK---DIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPP 1306
Query: 209 GVPSLRGRP 217
G P +G P
Sbjct: 1307 GPPGYKGFP 1315
Score = 50.8 bits (120), Expect = 1e-06
Identities = 51/162 (31%), Positives = 62/162 (38%), Gaps = 33/162 (20%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTP-RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P C+R G+PG+ Q G L G P P APG +P VG G A +GL
Sbjct: 823 PPGHSCER-GAPGIPGQPG-LPGYPGSPGAPGGKGQP---------GDVGPPGPAGMKGL 871
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLRVLPPILP 173
PG GR G PG G G P + PRG P P
Sbjct: 872 ----PGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGL-------------PGFP 914
Query: 174 GLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G G G PG +G PG G+ G +P G+ +G
Sbjct: 915 GFPGERGKPGAEGCPGAKGEPGEKGMSG--LPGDRGLRGAKG 954
Score = 50.4 bits (119), Expect = 2e-06
Identities = 55/157 (35%), Positives = 69/157 (43%), Gaps = 31/157 (19%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPGV+ Q +G P A G P ++ L G G RG D PG G
Sbjct: 748 GSPGVNGQ----KGIPGDPAFGHLGPPGKRGLS------GVPGIKGPRG-DPGCPGAEGP 796
Query: 126 S--PGG-GLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGG 180
+ PG GL+ G G G P H RG AP +P + P LPG + G
Sbjct: 797 AGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERG----APGIPGQ---PGLPGYPGSPG 849
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
A GG+G PG G PG +G++ G+P L GRP
Sbjct: 850 APGGKGQPGDVGPPGPAGMK--------GLPGLPGRP 878
Score = 48.1 bits (113), Expect = 8e-06
Identities = 52/163 (31%), Positives = 63/163 (38%), Gaps = 17/163 (10%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG S + G +P PG P + + VG G A +GL PG GR
Sbjct: 822 GPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGL----PGLPGR 877
Query: 126 SPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
G PG G G P + PRG P P PG GA G
Sbjct: 878 PGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRG----LPGFPGFPGERGKPGAEGCPGAKG 933
Query: 184 GRGLPGRRGLPGRSGLQGA--AVPPP-----VGVPSLRGRPWE 219
G G GLPG GL+GA A+ PP + + S +G P E
Sbjct: 934 EPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPGE 976
Score = 47.4 bits (111), Expect = 1e-05
Identities = 48/153 (31%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQR-LRRRRAKVGGWGCARARGLDRRAPGEGG 124
G G Q GP+ G P P P P P ++ L + G G RG + P +
Sbjct: 1316 GCDGKDGQKGPV-GFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRG-EPGPPADVD 1373
Query: 125 RSPG-GGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATG 183
P GL +PG RG GA R P P P L G G G
Sbjct: 1374 DCPRIPGLPGAPGMRGPEGAMGLPGM---------RGPSGPGCKGEPGLDGRRGVDGVPG 1424
Query: 184 GRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G PGR+G G G G PP P+G P +G
Sbjct: 1425 SPGPPGRKGDTGEDGYPGGPGPPGPIGDPGPKG 1457
Score = 46.2 bits (108), Expect = 3e-05
Identities = 41/107 (38%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 119 APGEGGRSPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
+PG G GL PG G +G P H P G P +PL+ PP PG
Sbjct: 318 SPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPG-VLVTPPLPLKG-PPGDPGFP 375
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAV---PPPVGVPSLRGRPWEA 220
G TG G PG GL GR G A + P P G P L G P EA
Sbjct: 376 GRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEA 422
Score = 46.2 bits (108), Expect = 3e-05
Identities = 49/160 (30%), Positives = 59/160 (36%), Gaps = 5/160 (3%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRR-QRLRRRRAKVGGWGCARARGL 115
P + G E G+ GP P PG A P R + K G G A GL
Sbjct: 390 PGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGL 449
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
+ PG G G +G VG P + +G P + PP PGL
Sbjct: 450 -QGLPGSSVIYCSVGNPGPQGIKGKVGP-PGGRGPKGEKGNEGLCACEPGPMGPPGPPGL 507
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G+ G GLPG G G G GA PP G+P G
Sbjct: 508 PGRQGSKGDLGLPGWLGTKGDPGPPGAEGPP--GLPGKHG 545
Score = 43.1 bits (100), Expect = 3e-04
Identities = 50/162 (30%), Positives = 62/162 (38%), Gaps = 19/162 (11%)
Query: 66 GSPGVSAQGGPLEGTP----RPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL--DRRA 119
G PG + G EG P P G + P + LR + +G G + +
Sbjct: 915 GFPGERGKPGA-EGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGT 973
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPR-----GRSRRAPQMPLRVLPPILPG 174
PGE G G PG RG G R +P G R P + PP PG
Sbjct: 974 PGEPGPPGDDGF---PGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPPG 1030
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPV-GVPSLRG 215
G+TG RG G GLPG G G+ PP G+ RG
Sbjct: 1031 ---PPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARG 1069
Score = 43.1 bits (100), Expect = 3e-04
Identities = 49/175 (28%), Positives = 61/175 (34%), Gaps = 28/175 (16%)
Query: 57 PAVRGCKRE-GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGL 115
P ++G + + GSPG+S G + P P PG++ P G G A
Sbjct: 1206 PGLKGERGDPGSPGISPPGPRGKKGP-PGPPGSSGPP---------GPAGATGRAPKDIP 1255
Query: 116 DRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGL 175
D PG+ G G +PG G G+ G P P PP PG
Sbjct: 1256 DPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCG----LPGPPGPPGPPGPPGY 1311
Query: 176 SRAGGATGGRGLPGRRGLPGRSGLQGAAVPP-------------PVGVPSLRGRP 217
G G G G G PG G G PP P G+P RG P
Sbjct: 1312 KGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEP 1366
Score = 40.4 bits (93), Expect = 0.002
Identities = 51/170 (30%), Positives = 64/170 (37%), Gaps = 33/170 (19%)
Query: 62 CKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPG 121
C +G G+ G + G P P PG R+ + +G G G PG
Sbjct: 266 CLYKGEKGIKGIPG-MVGLPGP--PG----------RKGESGIGAKGEKGIPGF----PG 308
Query: 122 EGGRSPGGGLEPSPGARGAVGAA--PAAARHRKPRGR--SRRAPQMPLRVLPPILPGLSR 177
G G PG +G +G P P+G +R P P ++ P LP
Sbjct: 309 PRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPL--- 365
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEALATAATP 227
+G PG G PGR G G PP G P L GRP EA A P
Sbjct: 366 -------KGPPGDPGFPGRYGETGDVGPP--GPPGLLGRPGEACAGMIGP 406
Score = 38.1 bits (87), Expect = 0.008
Identities = 46/172 (26%), Positives = 56/172 (32%), Gaps = 26/172 (15%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P G + +PG GPL G P A P P R G G RG D
Sbjct: 598 PGPPGDHEDATPGGKGFPGPL-GPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPD 656
Query: 117 RRAPGEG----------GRSPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMP 164
+G GR G + PG +G G AP + +GR
Sbjct: 657 GLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGR-------- 708
Query: 165 LRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGR 216
P PG + G G RG G G G G P P G P + G+
Sbjct: 709 -----PGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGVNGQ 755
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/116 (29%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 105 GGWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMP 164
G WG G PGE G G PG +G G + +P
Sbjct: 199 GSWGAGGPAG-PTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPGEVGQQGSPGPT 257
Query: 165 LRVLPP---ILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
L V PP + G G G GLPG G G SG+ G P RG P
Sbjct: 258 LLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIGAKGEKGIPGFPGPRGDP 313
Score = 36.2 bits (82), Expect = 0.031
Identities = 51/166 (30%), Positives = 63/166 (37%), Gaps = 20/166 (12%)
Query: 57 PAVRGCKRE-GSPGVSA-QGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARG 114
P RG K E G+ G+ A + GP+ G P P PG P RQ + +G G +G
Sbjct: 477 PGGRGPKGEKGNEGLCACEPGPM-GPPGP--PGL---PGRQG---SKGDLGLPGWLGTKG 527
Query: 115 LDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPG 174
D PG G G + G G GA R + R P P PG
Sbjct: 528 -DPGPPGAEGPPGLPGKHGASGPPGNKGAKGDMVVSRVKGHKGERGPDGP--------PG 578
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEA 220
G+ G G G +G PG G A P G P G P +A
Sbjct: 579 FPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKA 624
Score = 35.8 bits (81), Expect = 0.040
Identities = 48/175 (27%), Positives = 55/175 (31%), Gaps = 33/175 (18%)
Query: 64 REGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEG 123
R+G G GP G A PG P + VG G PG
Sbjct: 588 RDGHAGEKGDPGP-PGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLG--------FPGPP 638
Query: 124 GRSPGGGLEPSPGARGAVGA-----------APAAARHRKPRGRSRRAPQ-MPLRVLPPI 171
G G+ PG RG G RH P P+ P P
Sbjct: 639 GERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPG---PQG 695
Query: 172 LPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP---------PVGVPSLRGRP 217
PGLS + G G G PG +PG G +G P PVG P G P
Sbjct: 696 APGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSP 750
Score = 35.4 bits (80), Expect = 0.053
Identities = 58/221 (26%), Positives = 73/221 (33%), Gaps = 83/221 (37%)
Query: 59 VRGCKRE-GSPG-------VSAQGGPLEGTPRPAAPGAAPRPRRQR----LRRRRAKVGG 106
+RG K G PG +S +G P G P P P R + ++ RR + G
Sbjct: 949 LRGAKGAIGPPGDEGEMAIISQKGTP--GEPGPPGDDGFPGERGDKGTPGMQGRRGEPGR 1006
Query: 107 WGCARARGLDRRAPGEGGRSPGGGLEPSP----GARGAVGAAPAAARHRKPRGRSRRAPQ 162
+G G R PGE G+ PG P P G RG +G P
Sbjct: 1007 YG---PPGFHRGEPGEKGQ-PGPPGPPGPPGSTGLRGFIGF-----------------PG 1045
Query: 163 MPLRVLPPILPGLSRAGGATGGRGLPGR-------------------------------- 190
+P P PG G G RG G
Sbjct: 1046 LPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGEQ 1105
Query: 191 --------RGLPGRSGLQGAAVPPPV----GVPSLRGRPWE 219
RG PGR G G++ PP G+P LRG+P E
Sbjct: 1106 GLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQPGE 1146
Score = 32.7 bits (73), Expect = 0.34
Identities = 53/181 (29%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG GGP T P PG P + + G G G PGE G+
Sbjct: 196 GLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGV-GVKGQMG----DPGEVGQ 250
Query: 126 --SPGGGLEPSP-------GARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLS 176
SPG L P G +G G P P GR + +PG
Sbjct: 251 QGSPGPTLLVEPPDFCLYKGEKGIKGI-PGMVGLPGPPGRKGESGIGAKGEKG--IPGFP 307
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQG----AAVPPPVGVPSLRGRPWE--ALATAATPRRC 230
G G G PG GL G GL G + P G P RG P L T P +
Sbjct: 308 GPRGDPGSYGSPGFPGLKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKG 367
Query: 231 P 231
P
Sbjct: 368 P 368
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 173 PGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----------PVGVPSLRG 215
PG G G G PG GL G G++G PP P GVP G
Sbjct: 67 PGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGPTGVPGFPG 119
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 54.3 bits (129), Expect = 1e-07
Identities = 54/153 (35%), Positives = 62/153 (40%), Gaps = 35/153 (22%)
Query: 66 GSPGVSA-QGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
GSPG+ +G P + P P PGA P G G +G DR PG G
Sbjct: 627 GSPGLPGPKGEPGKIVPLPGPPGAEGLP------------GSPGFPGPQG-DRGFPGTPG 673
Query: 125 RSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGG 184
R PG PG +GAVG G P P V GL G G
Sbjct: 674 R-PG-----LPGEKGAVGQP----------GIGFPGPPGPKGV-----DGLPGDMGPPGT 712
Query: 185 RGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G PG GLPG G+QG P VG+P L+G P
Sbjct: 713 PGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLP 745
Score = 50.4 bits (119), Expect = 2e-06
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 16/156 (10%)
Query: 65 EGSPGVSAQGGP--LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGE 122
+G PG + + G L G P PGA + + +VG G A + G+ + GE
Sbjct: 1156 DGIPGSAGEKGEPGLPGRGFPGFPGAKGD------KGSKGEVGFPGLAGSPGIPG-SKGE 1208
Query: 123 GGRSPGGGLEPSPGARGAVGAAPAAAR-HRKPRGRSRRAPQMPLRVLPPILPGLSRAGGA 181
G G + PG G+ G A + R P+G+ P +P + PP LPG+ G
Sbjct: 1209 QGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPG-LPGLPGPMGPPGLPGIDGVKGD 1267
Query: 182 TGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G PG G+PG G G G+P + G P
Sbjct: 1268 KGNPGWPGAPGVPGPKGDPGFQ-----GMPGIGGSP 1298
Score = 50.1 bits (118), Expect = 2e-06
Identities = 50/157 (31%), Positives = 64/157 (40%), Gaps = 14/157 (8%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGW-GCARARGLDRRAPGEGG 124
G PG+ G P APG P P+ + +GG G ++G D PG G
Sbjct: 1257 GLPGIDGVKGDKGNPGWPGAPGV-PGPKGDPGFQGMPGIGGSPGITGSKG-DMGPPGVPG 1314
Query: 125 RSPGGGLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQMPLRVLP--PILPGLSRAGG 180
GL G +G G P A P G P P ++ P LPG G
Sbjct: 1315 FQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPPG-----PPGPYDIIKGEPGLPGPEGPPG 1369
Query: 181 ATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G +GLPG +G G +GL G +P P G+P G P
Sbjct: 1370 LKGLQGLPGPKGQQGVTGLVG--IPGPPGIPGFDGAP 1404
Score = 49.7 bits (117), Expect = 3e-06
Identities = 45/158 (28%), Positives = 64/158 (40%), Gaps = 19/158 (12%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRA------KVGGWGCARARGLDRRA 119
G PG+ G + P PG+ + ++ ++ ++G G +RG D
Sbjct: 918 GDPGLKGDKGDVG---LPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRG-DPGT 973
Query: 120 PGEGGRSPGGGLEPSPGARG--AVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSR 177
PG G+ G PG +G + P A P+G M L P PG
Sbjct: 974 PGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGS---VGGMGL----PGTPGEKG 1026
Query: 178 AGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G +G PG G G G +G A PP +G+P LRG
Sbjct: 1027 VPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRG 1064
Score = 49.7 bits (117), Expect = 3e-06
Identities = 53/178 (29%), Positives = 68/178 (38%), Gaps = 24/178 (13%)
Query: 57 PAVRGCKRE----GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARA 112
P + G K E G PG Q G L G+P A G Q G G
Sbjct: 1200 PGIPGSKGEQGFMGPPGPQGQPG-LPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGL 1258
Query: 113 RGLD-----RRAPGEGGRSPGGGLEPSPGARG--AVGAAPAAARHRKPRGRSRRAPQMPL 165
G+D + PG G G + PG +G +G +P + G P +P
Sbjct: 1259 PGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMG----PPGVPG 1314
Query: 166 RVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQG--------AAVPPPVGVPSLRG 215
P LPGL G G +G+PG +GLPG G G +P P G P L+G
Sbjct: 1315 FQGPKGLPGLQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKG 1372
Score = 48.9 bits (115), Expect = 5e-06
Identities = 47/163 (28%), Positives = 62/163 (38%), Gaps = 25/163 (15%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G PGV +G P PG +P + + + G G GL R +G
Sbjct: 269 QGMPGVGEKG-------EPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGE 321
Query: 125 RSPGGGLEPSPGARGAV-GAAPAAARHRK-------PRGRS--RRAPQMPLRVLPPILPG 174
+ G PG G V G P + + PRG + P +P + PP LP
Sbjct: 322 KGEAG----PPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLP- 376
Query: 175 LSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G PG RG G G G ++P P G L G P
Sbjct: 377 ---VPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPP 416
Score = 46.2 bits (108), Expect = 3e-05
Identities = 50/158 (31%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
+G G S ++G P P P ++G G A+G DR PG G
Sbjct: 460 KGQKGESCLICDIDGYRGPPGPQGPP-----------GEIGFPGQPGAKG-DRGLPGRDG 507
Query: 125 RS----PGG--GLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
+ P G GL PGA+G G R + +G P P + P + G + +
Sbjct: 508 VAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGD----PGFPGQ---PGMTGRAGS 560
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPP-PVGVPSLRG 215
G G GLPG +G PG GL+G PP VG P RG
Sbjct: 561 PGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRG 598
Score = 45.8 bits (107), Expect = 4e-05
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG 179
PG+ G + GL + G RG GA+ + P +P + PP PG+
Sbjct: 75 PGQKGDTGEPGLPGTKGTRGPPGASGYPG--------NPGLPGIPGQDGPPGPPGIPGCN 126
Query: 180 GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRPWEAL 221
G G RG G GLPG +G G P G+P ++G P E L
Sbjct: 127 GTKGERGPLGPPGLPGFAGNPG-----PPGLPGMKGDPGEIL 163
Score = 45.4 bits (106), Expect = 5e-05
Identities = 54/159 (33%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 66 GSPGVSAQGGPLEGTPRPAA-PGAAPRPRRQRLRRR-RAKVGGWGCARARGLDRRAPGEG 123
G GV+ GP +GTP PGA P R + G G G+ RA G
Sbjct: 504 GRDGVAGVPGP-QGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRA-GSP 561
Query: 124 GRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAG---- 179
GR GL PG +G+ G+ P G P PP PG AG
Sbjct: 562 GRDGHPGL---PGPKGSPGSVGLKGERGPPGGVG--FPGSRGDTGPPGPPGYGPAGPIGD 616
Query: 180 -GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G G G PG GLPG G G VP P G P G P
Sbjct: 617 KGQAGFPGGPGSPGLPGPKGEPGKIVPLP-GPPGAEGLP 654
Score = 44.7 bits (104), Expect = 9e-05
Identities = 46/161 (28%), Positives = 59/161 (36%), Gaps = 9/161 (5%)
Query: 65 EGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD-----RRA 119
EG PG GP P PG P + + +G G +G+D
Sbjct: 651 EGLPGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPG-IGFPGPPGPKGVDGLPGDMGP 709
Query: 120 PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR---VLPPILPGLS 176
PG GR GL +PG +G G K P P + P +PG
Sbjct: 710 PGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEH 769
Query: 177 RAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
A G G +G+ G G PG G G+ P +G P RG P
Sbjct: 770 GAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPP 810
Score = 43.9 bits (102), Expect = 1e-04
Identities = 49/172 (28%), Positives = 63/172 (36%), Gaps = 25/172 (14%)
Query: 66 GSPGVSAQGGP----LEGTPRPAAPGAAP-RPRRQRLRRRRAKVG-----GWGCARARGL 115
G PG+ G P ++G P P P RP L G G G +GL
Sbjct: 685 GQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGL 744
Query: 116 DRRA--PGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILP 173
PG G G+ PG GA+G +P P +P V P +P
Sbjct: 745 PGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPG-----PPGLPGSVGSPGVP 799
Query: 174 GLSRAG--GATGGRGLPGR------RGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G+ G G GG+G PG +G G G G +P P G +G P
Sbjct: 800 GIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLP 851
Score = 43.9 bits (102), Expect = 1e-04
Identities = 55/168 (32%), Positives = 64/168 (38%), Gaps = 22/168 (13%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P V+G K G PGV G L+G P PG P + G G GL
Sbjct: 725 PGVQGQK--GEPGVGLPG--LKGLP--GLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQ 778
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLP----PIL 172
G G GL S G+ G G P AR P G+ P + P
Sbjct: 779 ----GIRGEPGPPGLPGSVGSPGVPGIGPPGARG-PPGGQGPPGLSGPPGIKGEKGFPGF 833
Query: 173 PGLSRAG-----GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
PGL G GA G G+ G+ GLPG G QGA P G P +G
Sbjct: 834 PGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGA--PGIPGFPGSKG 879
Score = 43.1 bits (100), Expect = 3e-04
Identities = 57/182 (31%), Positives = 70/182 (38%), Gaps = 24/182 (13%)
Query: 56 CPAVRGCKRE-GSPGVSAQGG--PLEGTPRPAAP----GAAPRPRRQRLRRRRAKVGGWG 108
C V+G K E G PG+ G ++G P P G P + R G G
Sbjct: 41 CHGVKGQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASG 100
Query: 109 CARARGLDRRAPGEGGRSPGG--GLEPSPGARGAVG--AAPAAARHRKPRGRSRRAPQM- 163
GL +G P G G + G RG +G P A + P G P M
Sbjct: 101 YPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNPGPPG----LPGMK 156
Query: 164 --PLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPP----PVGVPSLRGRP 217
P +L + PG+ G G G+PG G PG GLQG PP P G P G P
Sbjct: 157 GDPGEILGHV-PGMLLKG-ERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPP 214
Query: 218 WE 219
E
Sbjct: 215 GE 216
Score = 43.1 bits (100), Expect = 3e-04
Identities = 44/169 (26%), Positives = 57/169 (33%), Gaps = 52/169 (30%)
Query: 54 LACPAVRGCKRE-------GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGG 106
+ P +RG K + GSPG + G + P +PG P G
Sbjct: 1057 IGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSP------------GS 1104
Query: 107 WGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLR 166
G + GL PGE G GL+ PG +G G
Sbjct: 1105 VGYPGSPGL----PGEKGDKGLPGLDGIPGVKGEAG------------------------ 1136
Query: 167 VLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
LPG G G +G PG G+PG +G +G P G P G
Sbjct: 1137 -----LPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPG 1180
Score = 42.0 bits (97), Expect = 6e-04
Identities = 46/166 (27%), Positives = 57/166 (34%), Gaps = 27/166 (16%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG + G + P GA P Q +R G G + G+ P
Sbjct: 749 GIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARG 808
Query: 126 SPGG----GLEPSPGARGAVGAA-------PAAARHRKPRGRSRRAPQMPLRVLP----- 169
PGG GL PG +G G P + +G Q L LP
Sbjct: 809 PPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGA 868
Query: 170 PILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
P +PG + G G G PG+ G PG PVG P L G
Sbjct: 869 PGIPGFPGSKGEMGVMGTPGQPGSPG-----------PVGAPGLPG 903
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/123 (32%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 99 RRRAKVG--GWGCARARGLDRRAPGEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGR 156
R AK G G GC + G G+ GL PG +G +G P P+G
Sbjct: 24 RAAAKGGCAGSGCGKCD-----CHGVKGQKGERGL---PGLQGVIGF-PGMQGPEGPQG- 73
Query: 157 SRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGR 216
P P LPG G G G PG GLPG G G P P G+P G
Sbjct: 74 ---PPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGP--PGPPGIPGCNGT 128
Query: 217 PWE 219
E
Sbjct: 129 KGE 131
Score = 39.3 bits (90), Expect = 0.004
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 21/158 (13%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
GSPG++ G + P G P Q ++ + G G A+GL PG G
Sbjct: 1296 GSPGITGSKGDMGPPGVPGFQGPKGLPGLQGIKGDQ---GDQGVPGAKGLPG-PPGPPG- 1350
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVL-PPILPGLSRA------ 178
P ++ PG G G P + ++ + + PP +PG A
Sbjct: 1351 -PYDIIKGEPGLPGPEGPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQKGE 1409
Query: 179 ---GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
G TG RG PG PG GL G+ PP G PS+
Sbjct: 1410 MGPAGPTGPRGFPGP---PGPDGLPGSMGPP--GTPSV 1442
Score = 38.1 bits (87), Expect = 0.008
Identities = 41/136 (30%), Positives = 48/136 (35%), Gaps = 2/136 (1%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGGR 125
G PG GP + P PG P + G G RG PG G
Sbjct: 85 GLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERG-PLGPPGLPGF 143
Query: 126 SPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGR 185
+ G PG +G G +G R P +P PP LPGL G G
Sbjct: 144 AGNPGPPGLPGMKGDPGEILGHVPGMLLKGE-RGFPGIPGTPGPPGLPGLQGPVGPPGFT 202
Query: 186 GLPGRRGLPGRSGLQG 201
G PG G PG G +G
Sbjct: 203 GPPGPPGPPGPPGEKG 218
Score = 37.7 bits (86), Expect = 0.011
Identities = 36/111 (32%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 121 GEGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRA-PQMPLRVLPPILPGLSRAG 179
G+ G+ G + SPG G G P + P+G A P P P I+ G G
Sbjct: 287 GKPGKDGDKGEKGSPGFPGEPGY-PGLIGRQGPQGEKGEAGPPGP----PGIVIGTGPLG 341
Query: 180 --------GATGGRGLPGRRG---LPGRSGLQGAAVPPPVGVPSLRGRPWE 219
G G RG PG +G LPG+ G G VP G P G E
Sbjct: 342 EKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGE 392
Score = 35.8 bits (81), Expect = 0.040
Identities = 46/153 (30%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 66 GSPGVSAQGGP-LEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG 124
GSPGV G P G P P P + + G +G D+ A G G
Sbjct: 794 GSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKG-DKGAQGLPG 852
Query: 125 RSPGGGLEPSPGARGAVGAA--PAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGAT 182
+ GL PG +GA G P + G P P P PGL G
Sbjct: 853 ITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMG----TPGQPGSPGPVGAPGLPGEKGDH 908
Query: 183 GGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRG 215
G G G RG PG G +G VG+P G
Sbjct: 909 GFPGSSGPRGDPGLKGDKG-----DVGLPGKPG 936
Score = 34.7 bits (78), Expect = 0.090
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 19/159 (11%)
Query: 66 GSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLDRRAPGEGG- 124
G PG G + +P A G P R + G G G A GE G
Sbjct: 477 GPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIGQPG----AKGEPGE 532
Query: 125 -----RSPGGGLEPS-PGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRA 178
R G +P PG G G A + R P +P P GL
Sbjct: 533 FYFDLRLKGDKGDPGFPGQPGMTGRAGSPGRDGHPG--------LPGPKGSPGSVGLKGE 584
Query: 179 GGATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
G GG G PG RG G G G P+G G P
Sbjct: 585 RGPPGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGFP 623
Score = 33.5 bits (75), Expect = 0.20
Identities = 43/178 (24%), Positives = 62/178 (34%), Gaps = 25/178 (14%)
Query: 57 PAVRGCKREGSPGVSAQGGPLEGTPRPAAPGAAPRPRRQRLRRRRAKVGGWGCARARGLD 116
P + GC G + GPL P G P ++ ++ G +
Sbjct: 120 PGIPGCN-----GTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGE 174
Query: 117 RRAPGEGGRSPGGGLEPSPGARGAVG-----------AAPAAARHRKPRGRSRRAPQMPL 165
R PG G GL PG +G VG P + G S + P+
Sbjct: 175 RGFPGIPGTPGPPGL---PGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDK 231
Query: 166 RVL----PPILPGLSRAG--GATGGRGLPGRRGLPGRSGLQGAAVPPPVGVPSLRGRP 217
PP +PG ++ G +G G++G PG G+ G G P RG+P
Sbjct: 232 GDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPRGKP 289
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.141 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,757,319
Number of Sequences: 37866
Number of extensions: 989678
Number of successful extensions: 17861
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 1074
Number of HSP's that attempted gapping in prelim test: 6765
Number of HSP's gapped (non-prelim): 4350
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.