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Search of human proteins with 169160757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169160757 PREDICTED: hypothetical protein [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160757 PREDICTED: hypothetical protein [Homo sapiens] 310 2e-85
gi|113412190 PREDICTED: hypothetical protein [Homo sapiens] 310 2e-85
gi|113408665 PREDICTED: hypothetical protein [Homo sapiens] 310 2e-85
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 42 2e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 42 2e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 42 2e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 42 2e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 40 6e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 40 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 39 0.001
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 39 0.001
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 39 0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.001
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 38 0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.004
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.004
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 38 0.004
gi|211059441 zinc finger protein 843 [Homo sapiens] 37 0.005
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 37 0.008
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 37 0.008
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 37 0.008
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 36 0.011
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 36 0.014
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 36 0.014
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.018
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 35 0.018
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 35 0.018
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 35 0.018
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 35 0.018
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 35 0.024
>gi|169160757 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 310 bits (795), Expect = 2e-85
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL 60
MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL
Sbjct: 1 MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL 60
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA
Sbjct: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
RQRRGPRGCSRQLHNHASFPAGRQGLAGFT
Sbjct: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
>gi|113412190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 310 bits (795), Expect = 2e-85
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL 60
MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL
Sbjct: 1 MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL 60
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA
Sbjct: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
RQRRGPRGCSRQLHNHASFPAGRQGLAGFT
Sbjct: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
>gi|113408665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 310 bits (795), Expect = 2e-85
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL 60
MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL
Sbjct: 1 MNAKQWRATSIRWGGFITITWERLRSVTAFILAETVLASQEVQGGVQVRVYLMNAVPDGL 60
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA
Sbjct: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
RQRRGPRGCSRQLHNHASFPAGRQGLAGFT
Sbjct: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 42.0 bits (97), Expect = 2e-04
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK---GQPRSAGLYGSPSRGGGRVP 113
P G+ G P GL AP G + + GERG K G P S G GSP G P
Sbjct: 376 PPGVPGSPGSSRPGLRGAPGWPGLKGSK-GERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 114 KEPPGSARQRRGPRG 128
PPG R+GP G
Sbjct: 435 PGPPGDIVFRKGPPG 449
Score = 31.6 bits (70), Expect = 0.26
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G +G P V G P G E GE G E G P GL G+P G P+ PG
Sbjct: 739 GAKGEPAVAMPGGPGTPGFPG-ERGNSGEHG--EIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ GP G P G QGL G
Sbjct: 796 ----QPGPPGEQGPPGRCIEGPRGAQGLPG 821
Score = 30.4 bits (67), Expect = 0.59
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR------------------EKGQPRS 98
GL G GPP + L PDN + ++G++GA EKG P
Sbjct: 233 GLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGD 292
Query: 99 AGLYGSPSRGG 109
GL G P + G
Sbjct: 293 PGLQGKPGKDG 303
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
DG+ G P V GL P G E GE+G ++G P G GSP G P PP
Sbjct: 568 DGIPGTPGVKGL-----PGPKG-ELALSGEKG--DQGPPGDPGSPGSPGPAG---PAGPP 616
Query: 118 GSARQRRGPRG 128
G GP+G
Sbjct: 617 G-----YGPQG 622
Score = 28.5 bits (62), Expect = 2.2
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P + G L+ + +EE + G P + G G P G P PPG
Sbjct: 139 GTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPG 198
Query: 119 -----SARQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
GPRG + G +G+ G T
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLT 235
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 59 GLQGGPPVGGL-GLLQAPDNSGHEEEQ-------EGERGAREKGQPRSAGLYGSPSRGGG 110
GL G P GL G P G EQ EG RGA+ G P GL G R G
Sbjct: 777 GLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ--GLPGLNGLKGQQGRRGK 834
Query: 111 RVPKEPPG 118
PK PG
Sbjct: 835 TGPKGDPG 842
Score = 28.1 bits (61), Expect = 2.9
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGARE-------KGQPRSAGLYGSPSRGGGR 111
G +G P + G+ + + E+ +G G E KG+P G G+P G R
Sbjct: 913 GQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNR 972
Query: 112 -VPKEP--------PGSARQRRGPRG 128
VP P PG A GPRG
Sbjct: 973 GVPGMPGLKGLKGLPGPAGP-PGPRG 997
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGR 111
P G G GPP G LG P G + +G G + EKG P G G P G
Sbjct: 1281 PPGTAGDMGPP-GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIG-- 1337
Query: 112 VPKEPPG 118
PK PPG
Sbjct: 1338 -PKGPPG 1343
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 42.0 bits (97), Expect = 2e-04
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK---GQPRSAGLYGSPSRGGGRVP 113
P G+ G P GL AP G + + GERG K G P S G GSP G P
Sbjct: 376 PPGVPGSPGSSRPGLRGAPGWPGLKGSK-GERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 114 KEPPGSARQRRGPRG 128
PPG R+GP G
Sbjct: 435 PGPPGDIVFRKGPPG 449
Score = 31.6 bits (70), Expect = 0.26
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G +G P V G P G E GE G E G P GL G+P G P+ PG
Sbjct: 739 GAKGEPAVAMPGGPGTPGFPG-ERGNSGEHG--EIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ GP G P G QGL G
Sbjct: 796 ----QPGPPGEQGPPGRCIEGPRGAQGLPG 821
Score = 30.4 bits (67), Expect = 0.59
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR------------------EKGQPRS 98
GL G GPP + L PDN + ++G++GA EKG P
Sbjct: 233 GLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGD 292
Query: 99 AGLYGSPSRGG 109
GL G P + G
Sbjct: 293 PGLQGKPGKDG 303
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
DG+ G P V GL P G E GE+G ++G P G GSP G P PP
Sbjct: 568 DGIPGTPGVKGL-----PGPKG-ELALSGEKG--DQGPPGDPGSPGSPGPAG---PAGPP 616
Query: 118 GSARQRRGPRG 128
G GP+G
Sbjct: 617 G-----YGPQG 622
Score = 28.5 bits (62), Expect = 2.2
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P + G L+ + +EE + G P + G G P G P PPG
Sbjct: 139 GTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPG 198
Query: 119 -----SARQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
GPRG + G +G+ G T
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLT 235
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 59 GLQGGPPVGGL-GLLQAPDNSGHEEEQ-------EGERGAREKGQPRSAGLYGSPSRGGG 110
GL G P GL G P G EQ EG RGA+ G P GL G R G
Sbjct: 777 GLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ--GLPGLNGLKGQQGRRGK 834
Query: 111 RVPKEPPG 118
PK PG
Sbjct: 835 TGPKGDPG 842
Score = 28.1 bits (61), Expect = 2.9
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGARE-------KGQPRSAGLYGSPSRGGGR 111
G +G P + G+ + + E+ +G G E KG+P G G+P G R
Sbjct: 913 GQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNR 972
Query: 112 -VPKEP--------PGSARQRRGPRG 128
VP P PG A GPRG
Sbjct: 973 GVPGMPGLKGLKGLPGPAGP-PGPRG 997
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGR 111
P G G GPP G LG P G + +G G + EKG P G G P G
Sbjct: 1281 PPGTAGDMGPP-GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIG-- 1337
Query: 112 VPKEPPG 118
PK PPG
Sbjct: 1338 -PKGPPG 1343
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 42.0 bits (97), Expect = 2e-04
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK---GQPRSAGLYGSPSRGGGRVP 113
P G+ G P GL AP G + + GERG K G P S G GSP G P
Sbjct: 376 PPGVPGSPGSSRPGLRGAPGWPGLKGSK-GERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 114 KEPPGSARQRRGPRG 128
PPG R+GP G
Sbjct: 435 PGPPGDIVFRKGPPG 449
Score = 31.6 bits (70), Expect = 0.26
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G +G P V G P G E GE G E G P GL G+P G P+ PG
Sbjct: 739 GAKGEPAVAMPGGPGTPGFPG-ERGNSGEHG--EIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ GP G P G QGL G
Sbjct: 796 ----QPGPPGEQGPPGRCIEGPRGAQGLPG 821
Score = 30.4 bits (67), Expect = 0.59
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR------------------EKGQPRS 98
GL G GPP + L PDN + ++G++GA EKG P
Sbjct: 233 GLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGD 292
Query: 99 AGLYGSPSRGG 109
GL G P + G
Sbjct: 293 PGLQGKPGKDG 303
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
DG+ G P V GL P G E GE+G ++G P G GSP G P PP
Sbjct: 568 DGIPGTPGVKGL-----PGPKG-ELALSGEKG--DQGPPGDPGSPGSPGPAG---PAGPP 616
Query: 118 GSARQRRGPRG 128
G GP+G
Sbjct: 617 G-----YGPQG 622
Score = 28.5 bits (62), Expect = 2.2
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P + G L+ + +EE + G P + G G P G P PPG
Sbjct: 139 GTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPG 198
Query: 119 -----SARQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
GPRG + G +G+ G T
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLT 235
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 59 GLQGGPPVGGL-GLLQAPDNSGHEEEQ-------EGERGAREKGQPRSAGLYGSPSRGGG 110
GL G P GL G P G EQ EG RGA+ G P GL G R G
Sbjct: 777 GLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ--GLPGLNGLKGQQGRRGK 834
Query: 111 RVPKEPPG 118
PK PG
Sbjct: 835 TGPKGDPG 842
Score = 28.1 bits (61), Expect = 2.9
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGARE-------KGQPRSAGLYGSPSRGGGR 111
G +G P + G+ + + E+ +G G E KG+P G G+P G R
Sbjct: 913 GQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNR 972
Query: 112 -VPKEP--------PGSARQRRGPRG 128
VP P PG A GPRG
Sbjct: 973 GVPGMPGLKGLKGLPGPAGP-PGPRG 997
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGR 111
P G G GPP G LG P G + +G G + EKG P G G P G
Sbjct: 1281 PPGTAGDMGPP-GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIG-- 1337
Query: 112 VPKEPPG 118
PK PPG
Sbjct: 1338 -PKGPPG 1343
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 42.0 bits (97), Expect = 2e-04
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK---GQPRSAGLYGSPSRGGGRVP 113
P G+ G P GL AP G + + GERG K G P S G GSP G P
Sbjct: 376 PPGVPGSPGSSRPGLRGAPGWPGLKGSK-GERGRPGKDAMGTPGSPGCAGSPGLPGSPGP 434
Query: 114 KEPPGSARQRRGPRG 128
PPG R+GP G
Sbjct: 435 PGPPGDIVFRKGPPG 449
Score = 31.6 bits (70), Expect = 0.26
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G +G P V G P G E GE G E G P GL G+P G P+ PG
Sbjct: 739 GAKGEPAVAMPGGPGTPGFPG-ERGNSGEHG--EIGLPGLPGLPGTPGNEGLDGPRGDPG 795
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ GP G P G QGL G
Sbjct: 796 ----QPGPPGEQGPPGRCIEGPRGAQGLPG 821
Score = 30.4 bits (67), Expect = 0.59
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 20/71 (28%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR------------------EKGQPRS 98
GL G GPP + L PDN + ++G++GA EKG P
Sbjct: 233 GLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGD 292
Query: 99 AGLYGSPSRGG 109
GL G P + G
Sbjct: 293 PGLQGKPGKDG 303
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
DG+ G P V GL P G E GE+G ++G P G GSP G P PP
Sbjct: 568 DGIPGTPGVKGL-----PGPKG-ELALSGEKG--DQGPPGDPGSPGSPGPAG---PAGPP 616
Query: 118 GSARQRRGPRG 128
G GP+G
Sbjct: 617 G-----YGPQG 622
Score = 28.5 bits (62), Expect = 2.2
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P + G L+ + +EE + G P + G G P G P PPG
Sbjct: 139 GTLGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPG 198
Query: 119 -----SARQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
GPRG + G +G+ G T
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLT 235
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/68 (39%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 59 GLQGGPPVGGL-GLLQAPDNSGHEEEQ-------EGERGAREKGQPRSAGLYGSPSRGGG 110
GL G P GL G P G EQ EG RGA+ G P GL G R G
Sbjct: 777 GLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQ--GLPGLNGLKGQQGRRGK 834
Query: 111 RVPKEPPG 118
PK PG
Sbjct: 835 TGPKGDPG 842
Score = 28.1 bits (61), Expect = 2.9
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGARE-------KGQPRSAGLYGSPSRGGGR 111
G +G P + G+ + + E+ +G G E KG+P G G+P G R
Sbjct: 913 GQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPGLKGFAGNPGEKGNR 972
Query: 112 -VPKEP--------PGSARQRRGPRG 128
VP P PG A GPRG
Sbjct: 973 GVPGMPGLKGLKGLPGPAGP-PGPRG 997
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGR 111
P G G GPP G LG P G + +G G + EKG P G G P G
Sbjct: 1281 PPGTAGDMGPP-GRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIG-- 1337
Query: 112 VPKEPPG 118
PK PPG
Sbjct: 1338 -PKGPPG 1343
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 40.4 bits (93), Expect = 6e-04
Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 29/104 (27%)
Query: 57 PDGLQGGP-------PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGG 109
P GL+G P PVG LGL N G E+G +AG G P R G
Sbjct: 1052 PPGLRGFPGDRGLPGPVGALGL---KGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPG 1108
Query: 110 GRVPKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG A ++ +GP+G PAGR GL G
Sbjct: 1109 ---PQGPPGPAGEKGAPGEKGPQG-----------PAGRDGLQG 1138
Score = 38.1 bits (87), Expect = 0.003
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQ--------EGERGAR-EKGQPRSAGLYGSPS 106
PDGL+G P PVG GL +P G +G+ G + EKG P GL G P
Sbjct: 1436 PDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPG 1495
Query: 107 RGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G + + P GP+G +S P G QG+ G
Sbjct: 1496 EQGEKGDRGLP-------GPQG--------SSGPKGEQGITG 1522
Score = 35.8 bits (81), Expect = 0.014
Identities = 34/92 (36%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG +G P PVG G P G Q+G G +KG G GSP G P P
Sbjct: 1332 DGPKGSPGPVGFPGDPGPPGEPG-PAGQDGPPG--DKGDDGEPGQTGSPGPTGEPGPSGP 1388
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG +RGP G + P GRQG G
Sbjct: 1389 PG----KRGPPG--------PAGPEGRQGEKG 1408
Score = 32.7 bits (73), Expect = 0.12
Identities = 30/90 (33%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P G + P E ++GE+GA KG+ AGL G P + G P+ PG
Sbjct: 1378 GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGA--KGE---AGLEGPPGKTGPIGPQGAPG 1432
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ GP G P G QGL G
Sbjct: 1433 ----KPGPDGL-----RGIPGPVGEQGLPG 1453
Score = 30.4 bits (67), Expect = 0.59
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 63 GPPVGGLGLLQAPDNSGHEEEQEG---ERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGS 119
GPP G G AP G + G EKG+P AG G P GG PK G
Sbjct: 1252 GPP-GPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGE 1310
Query: 120 ARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ GP G A+ P G +G G
Sbjct: 1311 -KGESGPSG--------AAGPPGPKGPPG 1330
Score = 29.6 bits (65), Expect = 1.00
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
DGL G P G P +GERG + G+ GL G P G PK PP
Sbjct: 633 DGLAGLPGEKGHRGDPGPSGPPGPPGDDGERG--DDGEVGPRGLPGEPGPRGLLGPKGPP 690
Query: 118 G 118
G
Sbjct: 691 G 691
Score = 29.3 bits (64), Expect = 1.3
Identities = 27/78 (34%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 57 PDGLQGGPPVGGL----GLLQAPDNSGH--EEEQEGERGAREKGQPRSAGLYGSPSRGGG 110
P G QG P GL G + P G + G GA G P G G P GG
Sbjct: 719 PPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGA--DGPPGHPGKEGPPGEKGG 776
Query: 111 RVPKEPPGSARQRRGPRG 128
+ P P G GPRG
Sbjct: 777 QGPPGPQGPIGY-PGPRG 793
Score = 29.3 bits (64), Expect = 1.3
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 28/85 (32%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQ--------------EGERGAREKGQPRSAGLYG 103
DG QG P GG+G A G E +GERG EKG+ +G G
Sbjct: 1266 DGPQGPP--GGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERG--EKGESGPSGAAG 1321
Query: 104 SPSRGGGRVPKEPPGSARQRRGPRG 128
P PK PPG GP+G
Sbjct: 1322 PPG------PKGPPGD----DGPKG 1336
Score = 28.9 bits (63), Expect = 1.7
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 20/86 (23%)
Query: 59 GLQGGP----PVGGLGLLQAPDNSGHE-----------EEQEGERGAREKGQPRS-AGLY 102
GL G P P G +G P +G + Q G G R + PR G
Sbjct: 871 GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKP 930
Query: 103 GSPSRGGGRVPKEPPGSARQRRGPRG 128
G GG P PPG RGP G
Sbjct: 931 GPKGNSGGDGPAGPPG----ERGPNG 952
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 57 PDGLQGGP----PVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGR 111
P G G P P G G + P G +G G A EKG P G G R G +
Sbjct: 1082 PPGPAGSPGERGPAGAAGPIGIPGRPG----PQGPPGPAGEKGAPGEKGPQGPAGRDGLQ 1137
Query: 112 VPKEPPGSARQRRGPRG 128
P PG A GP G
Sbjct: 1138 GPVGLPGPA----GPVG 1150
Score = 28.1 bits (61), Expect = 2.9
Identities = 35/128 (27%), Positives = 44/128 (34%), Gaps = 42/128 (32%)
Query: 59 GLQGGP-PVGGLGLLQAPDNSGHEEE-----------QEGERGAR--------------- 91
G QG P P G G + P SG + E Q+G+ G R
Sbjct: 1174 GEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLP 1233
Query: 92 ----EKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASF-------P 140
EKG+ G G P G R P PG+ GP+G + N +
Sbjct: 1234 GPPGEKGETGDVGQMGPPGPPGPRGPSGAPGA----DGPQGPPGGIGNPGAVGEKGEPGE 1289
Query: 141 AGRQGLAG 148
AG GL G
Sbjct: 1290 AGEPGLPG 1297
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.7 bits (91), Expect = 0.001
Identities = 37/99 (37%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 54 NAVPDGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGR 111
+A P G G GPP G +G + AP G G GA G P +AG G P G
Sbjct: 837 DAGPPGPAGPAGPP-GPIGNVGAPGAKG-ARGSAGPPGAT--GFPGAAGRVGPPGPSGNA 892
Query: 112 VPKEPPGSARQR--RGPRGCSRQLHNHASFPAGRQGLAG 148
P PPG A + +GPRG + PAGR G G
Sbjct: 893 GPPGPPGPAGKEGGKGPRG--------ETGPAGRPGEVG 923
Score = 36.2 bits (82), Expect = 0.011
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G +G P G +G+ P +G +EG+RGAR G+P GL G P GG + PG
Sbjct: 446 GAKGEP--GPVGVQGPPGPAG----EEGKRGAR--GEPGPTGLPGPPGERGGPGSRGFPG 497
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
A GP+G PAG +G G
Sbjct: 498 -ADGVAGPKG-----------PAGERGSPG 515
Score = 35.0 bits (79), Expect = 0.024
Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 57 PDGLQG--GPP--VGGLGLLQAPDNSGHE--------EEQEGERGAR-EKGQPRSAGLYG 103
P G G GPP +G GL P SG E ++G GA+ ++G+ AG G
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPG 1046
Query: 104 SPSRGGGRVPKEPPGSA--RQRRGPRGCSRQLHN-HASFPAGRQGLAG 148
+P G P P G + R GP G + + A PAG QG G
Sbjct: 1047 APGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Score = 34.3 bits (77), Expect = 0.041
Identities = 34/94 (36%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEP 116
DG+ G P G G +P +G + GE G E G P + GL GSP G P
Sbjct: 499 DGVAG--PKGPAGERGSPGPAG-PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGP 555
Query: 117 PGSARQ--RRGPRGCSRQLHNHASFPAGRQGLAG 148
PG A Q R GP G P G +G AG
Sbjct: 556 PGPAGQDGRPGPPG-----------PPGARGQAG 578
Score = 33.5 bits (75), Expect = 0.069
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G G G+ P + E + GERG G P + G G G + P P
Sbjct: 567 PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGV--PGPPGAVGPAGKDGEAGAQGPPGP 624
Query: 117 PGSARQR--RGPRGCSRQLHNHASFPAGRQGLAG 148
G A +R +GP G PAG G AG
Sbjct: 625 AGPAGERGEQGPAGSPG--FQGLPGPAGPPGEAG 656
Score = 32.7 bits (73), Expect = 0.12
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 59 GLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
G+QG P P G G AP N G + + +G P G+ G G PK
Sbjct: 686 GVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDR 745
Query: 118 GSARQRRGPRGCSRQLHNHASFPAGRQGLAGFT 150
G A GP+G A G+ G+ G T
Sbjct: 746 GDA----GPKG--------ADGSPGKDGVRGLT 766
Score = 32.3 bits (72), Expect = 0.15
Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 44 GGVQVRVYLMNAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSA 99
GG+ V + + P GL G P G Q P E G G R G+
Sbjct: 173 GGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDD 232
Query: 100 GLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPA--GRQGLAG 148
G G P R G R P P G AR G G + H F G +G AG
Sbjct: 233 GEAGKPGRPGERGPPGPQG-ARGLPGTAGLP-GMKGHRGFSGLDGAKGDAG 281
Score = 32.0 bits (71), Expect = 0.20
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G++G P P G G N G +G+ GA KG + G+ G+P G R P
Sbjct: 366 PQGVRGEPGPPGPAGAAGPAGNPG----ADGQPGA--KGANGAPGIAGAPGFPGARGPSG 419
Query: 116 PPGSARQRRGPRGCS 130
P G GP+G S
Sbjct: 420 PQGPGGP-PGPKGNS 433
Score = 30.4 bits (67), Expect = 0.59
Identities = 30/96 (31%), Positives = 34/96 (35%), Gaps = 21/96 (21%)
Query: 54 NAVPDGLQGGP----------PVGGLGLLQAPDNSGHE--EEQEGERGAR-------EKG 94
+A P G G P P+G G AP + G G GAR E G
Sbjct: 747 DAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPG 806
Query: 95 QPRSAGLYGSPSRGGGRVPKEPPGSARQR--RGPRG 128
P AG G P G K PG A + GP G
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG 842
Score = 30.0 bits (66), Expect = 0.76
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 17/98 (17%)
Query: 57 PDGLQG-GPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G QG G P G G P G +G+ GA KG+P G+ G P G +E
Sbjct: 417 PSGPQGPGGPPGPKGNSGEPGAPG----SKGDTGA--KGEPGPVGVQGPPGPAG----EE 466
Query: 116 PPGSARQRRGPRGC-----SRQLHNHASFPAGRQGLAG 148
AR GP G R FP G G+AG
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFP-GADGVAG 503
Score = 30.0 bits (66), Expect = 0.76
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 65 PVGGLGLL--QAPDNSGHEEEQEGERGAR----------EKGQPRSAGLYGSPSRGGGRV 112
PVG G Q P E ++G+RG + G P S G G G
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAG 1139
Query: 113 PKEPPGSA 120
P+ PPGSA
Sbjct: 1140 PRGPPGSA 1147
Score = 29.6 bits (65), Expect = 1.00
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 37/131 (28%)
Query: 57 PDGLQGGP----------PVGGLGLLQAPDNSGHEEE-----QEGERG------ARE--- 92
P G QG P P+G G P +G + E + GERG AR
Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG 257
Query: 93 -------KGQPRSAGLYGSPSRGGGRVPKEPPGS-----ARQRRGPRGC-SRQLHNHASF 139
KG +GL G+ G PK PGS A + GPRG + A
Sbjct: 258 TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPG 317
Query: 140 PAGRQGLAGFT 150
PAG +G G T
Sbjct: 318 PAGARGNDGAT 328
Score = 29.6 bits (65), Expect = 1.00
Identities = 31/93 (33%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
PDG G P P G G P G G+ G G P G G P + G R
Sbjct: 549 PDGKTGPPGPAGQDGRPGPPGPPG----ARGQAGVM--GFPGPKGAAGEPGKAGERGVPG 602
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG+ GP G + A P G G AG
Sbjct: 603 PPGAV----GPAG--KDGEAGAQGPPGPAGPAG 629
Score = 29.6 bits (65), Expect = 1.00
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKEPP 117
G++G GL P S E+ G G A +G P SAG G G P PP
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPP 1165
Query: 118 GSARQRRGPRG 128
G R R G G
Sbjct: 1166 G-PRGRTGDAG 1175
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 54 NAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVP 113
+A P G G P G G + P SG+ A ++G G G R G P
Sbjct: 867 SAGPPGATGFP--GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGP 924
Query: 114 KEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A ++ P A PAG G G
Sbjct: 925 PGPPGPAGEKGSP---------GADGPAGAPGTPG 950
Score = 28.1 bits (61), Expect = 2.9
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 59 GLQGGP-PVGGLGLLQAPDNSGHEEE--QEGERGAR-EKGQPRSAGLYGSPSRGGGRVPK 114
G QG P P G G P G + G GAR E+G P G+ G P G R
Sbjct: 641 GFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGAN 700
Query: 115 EPPGS 119
PG+
Sbjct: 701 GAPGN 705
Score = 28.1 bits (61), Expect = 2.9
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 61 QGGP--PVGGLGLLQAPDNSGH-----------EEEQEGERGAREKGQPRSAGLYGSPSR 107
+ GP P G G AP + G +G+ GA KG+P AG G
Sbjct: 783 ESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGA--KGEPGDAGAKGDAGP 840
Query: 108 GGGRVPKEPPG-----SARQRRGPRGCSRQLHNHASFP--AGRQGLAG 148
G P PPG A +G RG S FP AGR G G
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARG-SAGPPGATGFPGAAGRVGPPG 887
Score = 26.6 bits (57), Expect = 8.5
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKE 115
DG +G P G G +P +G Q G RG E+G+P + G G+ G
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENG-APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAG 332
Query: 116 PPGSARQRRGPRG 128
PPG GP G
Sbjct: 333 PPGPT----GPAG 341
Score = 26.6 bits (57), Expect = 8.5
Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 22/108 (20%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHE-----------EEQEGERG----AREKGQPRSAGL 101
P G +G P G G AP G + Q GERG G+P G
Sbjct: 930 PAGEKGSP--GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987
Query: 102 YGSPSRGGGRVPKEPPGSARQRRGPRGCS-RQLHNHASFPAGRQGLAG 148
G+ G P PPG A GP G S R+ A GR G G
Sbjct: 988 SGASGERGPPGPMGPPGLA----GPPGESGREGAPGAEGSPGRDGSPG 1031
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P GL+G P GL G AP G E Q G G+ E+G +AG G P R G
Sbjct: 1034 PAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPG--- 1090
Query: 113 PKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG A ++ +GP+G PAGR G+ G
Sbjct: 1091 PQGPPGPAGEKGAPGEKGPQG-----------PAGRDGVQG 1120
Score = 35.8 bits (81), Expect = 0.014
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG +G P PVG G P G Q+G G +KG+ G G P G P P
Sbjct: 1314 DGPKGNPGPVGFPGDPGPPGEPG-PAGQDGVGG--DKGEDGDPGQPGPPGPSGEAGPPGP 1370
Query: 117 PGSARQRRGPRGCS----RQLHNHASFPAGRQGLAGFT 150
PG +RGP G + RQ A AG +G G T
Sbjct: 1371 PG----KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1404
Score = 33.9 bits (76), Expect = 0.053
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 59 GLQGGPPVGG-------LGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGG 110
GL+G P G +GL+ P G ++G+RG +G P + G G P G
Sbjct: 1453 GLKGDPGSKGEKGHPGLIGLIGPPGEQG----EKGDRGLPGTQGSPGAKGDGGIPGPAGP 1508
Query: 111 RVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P PPG +GP+G + ++ PAG++G +G
Sbjct: 1509 LGPPGPPGLPGP-QGPKG-----NKGSTGPAGQKGDSG 1540
Score = 33.5 bits (75), Expect = 0.069
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 37 LASQEVQGGV---QVRVYLMNAV-PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAR 91
+++QE Q Q R+ L P GL G P PVGG G A SG Q G RG +
Sbjct: 521 ISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ-GPRGVQ 579
Query: 92 -EKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
G G G P GGR PG+ +G RG
Sbjct: 580 GPPGPTGKPGKRGRPGADGGRGMPGEPGA----KGDRG 613
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G G P P G G P + E ++GE+GA KG+ AG G P + G P+
Sbjct: 1361 PSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGA--KGE---AGAEGPPGKTGPVGPQG 1411
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G + GP G P G QGL G
Sbjct: 1412 PAG----KPGPEGL-----RGIPGPVGEQGLPG 1435
Score = 32.3 bits (72), Expect = 0.15
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQ--------EGERGAR-EKGQPRSAGLYGSPS 106
P+GL+G P PVG GL A G +G+ G++ EKG P GL G P
Sbjct: 1418 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1477
Query: 107 RGGGRVPKEPPGS 119
G + + PG+
Sbjct: 1478 EQGEKGDRGLPGT 1490
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 30/96 (31%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQ-----EGERGAR-------------------E 92
P GLQG PVG G+ G +Q +G+ GAR E
Sbjct: 1163 PPGLQG--PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1220
Query: 93 KGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
KG+ G G P G R P+ P G+ GP+G
Sbjct: 1221 KGENGDVGPMGPPGPPGPRGPQGPNGA----DGPQG 1252
Score = 29.6 bits (65), Expect = 1.00
Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPK- 114
P G G P P G G A G G EKG+P AG G P G PK
Sbjct: 1229 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1288
Query: 115 --------EPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
PPG+A GP G + P G G GF
Sbjct: 1289 ERGEKGEAGPPGAA----GPPGAKGPPGDDG--PKGNPGPVGF 1325
Score = 28.5 bits (62), Expect = 2.2
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----------EKGQPRSAGLYGSPSRG 108
G QG P G ++ D GE G R GQP AG+ G P
Sbjct: 631 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 690
Query: 109 GGRVPKEPPGSARQR--RGPRGCSRQL----HNHASFPAGRQGLAG 148
G P+ PG Q+ GP+G P G+ GLAG
Sbjct: 691 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 736
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGG 109
G QG P + GL P +E Q GE+GA G P G G P G
Sbjct: 727 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA--LGPPGPQGPIGYPGPRG 775
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 86 GERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
GE+GAR G+ G P G R P P GS R RGP G
Sbjct: 877 GEKGAR--------GVAGKPGPRGQRGPTGPRGS-RGARGPTG 910
Score = 27.3 bits (59), Expect = 5.0
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRV 112
P G QG P GL Q P E+ +G+ G G P G G G
Sbjct: 701 PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALG 760
Query: 113 PKEPPGSARQRRGPRG 128
P P G GPRG
Sbjct: 761 PPGPQGPIGY-PGPRG 775
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P GL+G P GL G AP G E Q G G+ E+G +AG G P R G
Sbjct: 983 PAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPG--- 1039
Query: 113 PKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG A ++ +GP+G PAGR G+ G
Sbjct: 1040 PQGPPGPAGEKGAPGEKGPQG-----------PAGRDGVQG 1069
Score = 35.8 bits (81), Expect = 0.014
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG +G P PVG G P G Q+G G +KG+ G G P G P P
Sbjct: 1263 DGPKGNPGPVGFPGDPGPPGEPG-PAGQDGVGG--DKGEDGDPGQPGPPGPSGEAGPPGP 1319
Query: 117 PGSARQRRGPRGCS----RQLHNHASFPAGRQGLAGFT 150
PG +RGP G + RQ A AG +G G T
Sbjct: 1320 PG----KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1353
Score = 33.9 bits (76), Expect = 0.053
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 59 GLQGGPPVGG-------LGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGG 110
GL+G P G +GL+ P G ++G+RG +G P + G G P G
Sbjct: 1402 GLKGDPGSKGEKGHPGLIGLIGPPGEQG----EKGDRGLPGTQGSPGAKGDGGIPGPAGP 1457
Query: 111 RVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P PPG +GP+G + ++ PAG++G +G
Sbjct: 1458 LGPPGPPGLPGP-QGPKG-----NKGSTGPAGQKGDSG 1489
Score = 33.5 bits (75), Expect = 0.069
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 37 LASQEVQGGV---QVRVYLMNAV-PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAR 91
+++QE Q Q R+ L P GL G P PVGG G A SG Q G RG +
Sbjct: 470 ISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ-GPRGVQ 528
Query: 92 -EKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
G G G P GGR PG+ +G RG
Sbjct: 529 GPPGPTGKPGKRGRPGADGGRGMPGEPGA----KGDRG 562
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G G P P G G P + E ++GE+GA KG+ AG G P + G P+
Sbjct: 1310 PSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGA--KGE---AGAEGPPGKTGPVGPQG 1360
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G + GP G P G QGL G
Sbjct: 1361 PAG----KPGPEGL-----RGIPGPVGEQGLPG 1384
Score = 32.3 bits (72), Expect = 0.15
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQ--------EGERGAR-EKGQPRSAGLYGSPS 106
P+GL+G P PVG GL A G +G+ G++ EKG P GL G P
Sbjct: 1367 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1426
Query: 107 RGGGRVPKEPPGS 119
G + + PG+
Sbjct: 1427 EQGEKGDRGLPGT 1439
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 30/96 (31%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQ-----EGERGAR-------------------E 92
P GLQG PVG G+ G +Q +G+ GAR E
Sbjct: 1112 PPGLQG--PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1169
Query: 93 KGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
KG+ G G P G R P+ P G+ GP+G
Sbjct: 1170 KGENGDVGPMGPPGPPGPRGPQGPNGA----DGPQG 1201
Score = 29.6 bits (65), Expect = 1.00
Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPK- 114
P G G P P G G A G G EKG+P AG G P G PK
Sbjct: 1178 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1237
Query: 115 --------EPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
PPG+A GP G + P G G GF
Sbjct: 1238 ERGEKGEAGPPGAA----GPPGAKGPPGDDG--PKGNPGPVGF 1274
Score = 28.5 bits (62), Expect = 2.2
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----------EKGQPRSAGLYGSPSRG 108
G QG P G ++ D GE G R GQP AG+ G P
Sbjct: 580 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 639
Query: 109 GGRVPKEPPGSARQR--RGPRGCSRQL----HNHASFPAGRQGLAG 148
G P+ PG Q+ GP+G P G+ GLAG
Sbjct: 640 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 685
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGG 109
G QG P + GL P +E Q GE+GA G P G G P G
Sbjct: 676 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA--LGPPGPQGPIGYPGPRG 724
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 86 GERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
GE+GAR G+ G P G R P P GS R RGP G
Sbjct: 826 GEKGAR--------GVAGKPGPRGQRGPTGPRGS-RGARGPTG 859
Score = 27.3 bits (59), Expect = 5.0
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRV 112
P G QG P GL Q P E+ +G+ G G P G G G
Sbjct: 650 PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALG 709
Query: 113 PKEPPGSARQRRGPRG 128
P P G GPRG
Sbjct: 710 PPGPQGPIGY-PGPRG 724
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 39.3 bits (90), Expect = 0.001
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P GL+G P GL G AP G E Q G G+ E+G +AG G P R G
Sbjct: 1022 PAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPG--- 1078
Query: 113 PKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG A ++ +GP+G PAGR G+ G
Sbjct: 1079 PQGPPGPAGEKGAPGEKGPQG-----------PAGRDGVQG 1108
Score = 35.8 bits (81), Expect = 0.014
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG +G P PVG G P G Q+G G +KG+ G G P G P P
Sbjct: 1302 DGPKGNPGPVGFPGDPGPPGEPG-PAGQDGVGG--DKGEDGDPGQPGPPGPSGEAGPPGP 1358
Query: 117 PGSARQRRGPRGCS----RQLHNHASFPAGRQGLAGFT 150
PG +RGP G + RQ A AG +G G T
Sbjct: 1359 PG----KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKT 1392
Score = 33.9 bits (76), Expect = 0.053
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 59 GLQGGPPVGG-------LGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGG 110
GL+G P G +GL+ P G ++G+RG +G P + G G P G
Sbjct: 1441 GLKGDPGSKGEKGHPGLIGLIGPPGEQG----EKGDRGLPGTQGSPGAKGDGGIPGPAGP 1496
Query: 111 RVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P PPG +GP+G + ++ PAG++G +G
Sbjct: 1497 LGPPGPPGLPGP-QGPKG-----NKGSTGPAGQKGDSG 1528
Score = 33.5 bits (75), Expect = 0.069
Identities = 35/98 (35%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 37 LASQEVQGGV---QVRVYLMNAV-PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAR 91
+++QE Q Q R+ L P GL G P PVGG G A SG Q G RG +
Sbjct: 509 ISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQ-GPRGVQ 567
Query: 92 -EKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
G G G P GGR PG+ +G RG
Sbjct: 568 GPPGPTGKPGKRGRPGADGGRGMPGEPGA----KGDRG 601
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 19/93 (20%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G G P P G G P + E ++GE+GA KG+ AG G P + G P+
Sbjct: 1349 PSGEAGPPGPPGKRG----PPGAAGAEGRQGEKGA--KGE---AGAEGPPGKTGPVGPQG 1399
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G + GP G P G QGL G
Sbjct: 1400 PAG----KPGPEGL-----RGIPGPVGEQGLPG 1423
Score = 32.3 bits (72), Expect = 0.15
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQ--------EGERGAR-EKGQPRSAGLYGSPS 106
P+GL+G P PVG GL A G +G+ G++ EKG P GL G P
Sbjct: 1406 PEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPG 1465
Query: 107 RGGGRVPKEPPGS 119
G + + PG+
Sbjct: 1466 EQGEKGDRGLPGT 1478
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 30/96 (31%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQ-----EGERGAR-------------------E 92
P GLQG PVG G+ G +Q +G+ GAR E
Sbjct: 1151 PPGLQG--PVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGE 1208
Query: 93 KGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
KG+ G G P G R P+ P G+ GP+G
Sbjct: 1209 KGENGDVGPMGPPGPPGPRGPQGPNGA----DGPQG 1240
Score = 29.6 bits (65), Expect = 1.00
Identities = 33/103 (32%), Positives = 36/103 (34%), Gaps = 16/103 (15%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPK- 114
P G G P P G G A G G EKG+P AG G P G PK
Sbjct: 1217 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKG 1276
Query: 115 --------EPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
PPG+A GP G + P G G GF
Sbjct: 1277 ERGEKGEAGPPGAA----GPPGAKGPPGDDG--PKGNPGPVGF 1313
Score = 28.5 bits (62), Expect = 2.2
Identities = 31/106 (29%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----------EKGQPRSAGLYGSPSRG 108
G QG P G ++ D GE G R GQP AG+ G P
Sbjct: 619 GPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPK 678
Query: 109 GGRVPKEPPGSARQR--RGPRGCSRQL----HNHASFPAGRQGLAG 148
G P+ PG Q+ GP+G P G+ GLAG
Sbjct: 679 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAG 724
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGG 109
G QG P + GL P +E Q GE+GA G P G G P G
Sbjct: 715 GPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA--LGPPGPQGPIGYPGPRG 763
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 86 GERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
GE+GAR G+ G P G R P P GS R RGP G
Sbjct: 865 GEKGAR--------GVAGKPGPRGQRGPTGPRGS-RGARGPTG 898
Score = 27.3 bits (59), Expect = 5.0
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRV 112
P G QG P GL Q P E+ +G+ G G P G G G
Sbjct: 689 PPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALG 748
Query: 113 PKEPPGSARQRRGPRG 128
P P G GPRG
Sbjct: 749 PPGPQGPIGY-PGPRG 763
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/87 (39%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 63 GPPVGGLGLLQAPDNSGHEEEQEGERGA-REKGQPRSAGLYGSPSRGGGRVPKEPPGSAR 121
GPP G G AP +G E +GERGA EKG+ G+ G P G P P G
Sbjct: 804 GPP-GPAGFPGAPGQNG-EPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG 861
Query: 122 QRRGPRGCSRQLHNHASFPAGRQGLAG 148
+R P G A FP G +GL G
Sbjct: 862 ERGSPGG-----PGAAGFP-GARGLPG 882
Score = 35.4 bits (80), Expect = 0.018
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 61 QGGPP-----VGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
+GGPP GG G P G + E+ G G P + GL G P G P
Sbjct: 835 EGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPG 894
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P GS + GP G PAG G G
Sbjct: 895 PSGSP-GKDGPPG-----------PAGNTGAPG 915
Score = 34.3 bits (77), Expect = 0.041
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRV 112
P G G P G P ++ + GERGA +G P + G GSP G +
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128
Query: 113 PKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG A RGP G S P G+ G +G
Sbjct: 1129 AIGSPGPAGP-RGPVG--------PSGPPGKDGTSG 1155
Score = 33.1 bits (74), Expect = 0.090
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G G P G G++ P G++ G+ G E+G P G G P + G P+ P
Sbjct: 565 PPGPSG--PRGQPGVMGFPGPKGNDGAP-GKNG--ERGGPGGPGPQGPPGKNGETGPQGP 619
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG GP G + P G QGL G
Sbjct: 620 PGPT----GPGG-----DKGDTGPPGPQGLQG 642
Score = 32.7 bits (73), Expect = 0.12
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 24/108 (22%)
Query: 59 GLQGGPPVGG-LGLLQAPDNSGHE--EEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
GL G P + G G+ P GH + + GE+G E G P G G P G P
Sbjct: 243 GLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG--ETGAPGLKGENGLPGENGAPGPMG 300
Query: 116 PPGS--------------ARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
P G+ AR G RG Q P G G AGF
Sbjct: 301 PRGAPGERGRPGLPGAAGARGNDGARGSDGQ-----PGPPGPPGTAGF 343
Score = 32.7 bits (73), Expect = 0.12
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G +G P G GL A G++ + + G P +AG GSP G P
Sbjct: 298 PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAG 357
Query: 116 PPGS--ARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PGS A +RG G Q H A P G G+ G
Sbjct: 358 SPGSNGAPGQRGEPG--PQGHAGAQGPPGPPGING 390
Score = 32.3 bits (72), Expect = 0.15
Identities = 35/111 (31%), Positives = 39/111 (35%), Gaps = 34/111 (30%)
Query: 39 SQEVQGGVQVRVYLMNAVPDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPR 97
S +V+ GV V GL G P P G G P SGH G P
Sbjct: 157 SYDVKSGVAV---------GGLAGYPGPAGPPGPPGPPGTSGHP------------GSPG 195
Query: 98 SAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
S G G P G P PPG GP G PAG+ G +G
Sbjct: 196 SPGYQGPPGEPGQAGPSGPPGPP-GAIGPSG-----------PAGKDGESG 234
Score = 31.2 bits (69), Expect = 0.34
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 29/109 (26%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSA----------------GLY 102
G +G P G P+ E+ GERGA PR A G+
Sbjct: 483 GERGAPGFRGPA---GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMP 539
Query: 103 GSPSRGGGRVPKEPPGSARQ--RRGPRGCSRQLHNHASFPAGRQGLAGF 149
GSP G PPGS + R GP G S P G+ G+ GF
Sbjct: 540 GSPGGPGSDGKPGPPGSQGESGRPGPPG--------PSGPRGQPGVMGF 580
Score = 31.2 bits (69), Expect = 0.34
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 59 GLQGGP----PVGGLGLLQAPDNSGHE-----EEQEGERGAR-------EKGQPRSAGLY 102
GL+GG P GG G P G + GERG +KG+P G
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD 752
Query: 103 GSPSRGGGRVPK---EPPGSARQ 122
G P + G R P PPG A Q
Sbjct: 753 GVPGKDGPRGPTGPIGPPGPAGQ 775
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 65 PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGS--ARQ 122
P G G AP G E +G GA+ G P G+ GSP G P PG+
Sbjct: 355 PAGSPGSNGAPGQRG-EPGPQGHAGAQ--GPPGPPGINGSPGGKGEMGPAGIPGAPGLMG 411
Query: 123 RRGPRGCSRQLHNHASFPAGRQGLAG 148
RGP G PAG G G
Sbjct: 412 ARGPPG-----------PAGANGAPG 426
Score = 30.8 bits (68), Expect = 0.45
Identities = 35/104 (33%), Positives = 43/104 (41%), Gaps = 23/104 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--------EGERGAR-EKGQPRSAGLYGSPS 106
P GLQG P GG G P G + + +G+ GA E+G P GL G+P
Sbjct: 637 PQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPP---GLAGAPG 693
Query: 107 RGGGRVPKEPPG--SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
GG P P G A GP G A+ G QG+ G
Sbjct: 694 LRGGAGPPGPEGGKGAAGPPGPPG--------AAGTPGLQGMPG 729
Score = 30.4 bits (67), Expect = 0.59
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 67 GGLGLLQAPDNSGHE--EEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRR 124
G G+ P G + + GE GA G P +AG G+P G P PG +
Sbjct: 450 GEAGIPGVPGAKGEDGKDGSPGEPGAN--GLPGAAGERGAPGFRGPAGPNGIPG----EK 503
Query: 125 GPRGCSRQLHNHASFPAGRQGLAG 148
GP G A PAG +G AG
Sbjct: 504 GPAG-----ERGAPGPAGPRGAAG 522
Score = 30.4 bits (67), Expect = 0.59
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 57 PDGLQGGPPVGGL----GLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRV 112
P G QG P + G G P + G G ++G+ S G G+P G
Sbjct: 994 PPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG 1053
Query: 113 PKEPPGSA--RQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P P G + R GP G + A PAG +G G
Sbjct: 1054 PVGPAGKSGDRGESGPAGPA-----GAPGPAGSRGAPG 1086
Score = 28.5 bits (62), Expect = 2.2
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 59 GLQGGPPVGGL----GLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPK 114
G GGP G GL P ++G+ + G P AG G+P G PK
Sbjct: 864 GSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPK 923
Query: 115 EPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G ++ P Q A P G G+ G
Sbjct: 924 GDAGQPGEKGSP---GAQGPPGAPGPLGIAGITG 954
Score = 28.1 bits (61), Expect = 2.9
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQE--------GERGAREKGQPRSAGLYGSPSRGG 109
+G +GGP GG G P +G Q G++G + G P GL G P GG
Sbjct: 593 NGERGGP--GGPGPQGPPGKNGETGPQGPPGPTGPGGDKG--DTGPPGPQGLQGLPGTGG 648
Query: 110 GRVPKEPPGSARQRRGPRG 128
PG GP+G
Sbjct: 649 PPGENGKPGEP----GPKG 663
Score = 28.1 bits (61), Expect = 2.9
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAG---LYGSPSRGGGRVP 113
P GL G P + G +G + G+ A G P +AG L G P GG
Sbjct: 685 PPGLAGAPGLRG--------GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGS 736
Query: 114 KEPPGSARQRRGP 126
P G + GP
Sbjct: 737 PGPKGDKGEPGGP 749
Score = 26.6 bits (57), Expect = 8.5
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 32/108 (29%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEE-----------QEGERGAR-------EKGQPRSAG 100
GLQG P G G L +P G + E ++G RG GQP G
Sbjct: 723 GLQGMP--GERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKG 780
Query: 101 LYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G+P G P+ PG R GP G PAG G G
Sbjct: 781 EGGAPGLPGIAGPRGSPGE-RGETGPPG-----------PAGFPGAPG 816
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 38.1 bits (87), Expect = 0.003
Identities = 36/94 (38%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 58 DGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPK 114
DG G GPP G G P G + G++G A EKG+ AG+ G P + G P
Sbjct: 1346 DGAAGKEGPP-GKQGFYGPPGPKG-DPGAAGQKGQAGEKGR---AGMPGGPGKSGSMGPV 1400
Query: 115 EPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A G RG H A P+G GL G
Sbjct: 1401 GPPGPA----GERG-----HPGAPGPSGSPGLPG 1425
Score = 31.6 bits (70), Expect = 0.26
Identities = 32/90 (35%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 42 VQGGVQVRVYLMNAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPR---S 98
VQG YL+ G QG P V GL S E RG +G P S
Sbjct: 960 VQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGS 1019
Query: 99 AGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
GL G P G R + PPG R GP G
Sbjct: 1020 PGLPGPPGLPGQRGEEGPPG-MRGSPGPPG 1048
Score = 30.0 bits (66), Expect = 0.76
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKE 115
P G +G P G GL +G E +G++G A G P + G G P G +
Sbjct: 654 PSGEKGEPGPPGFGLPGKQGKAG-ERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQG 712
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G ++ L + AGR G G
Sbjct: 713 PAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPG 745
Score = 30.0 bits (66), Expect = 0.76
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 45 GVQVRVYLMNAVPDGLQGGPP--VGGLGLLQAPDNSGHEEEQEGERGAREKGQPR---SA 99
G+Q L D + GPP G G P G + E+ A EKG+P S
Sbjct: 1066 GLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSE 1125
Query: 100 GLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
GL G P G R + P G++ + +G +G Q FP G G GF
Sbjct: 1126 GLPGPPGPAGPRGERGPQGNSGE-KGDQGFQGQ----PGFP-GPPGPPGF 1169
Score = 29.6 bits (65), Expect = 1.00
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 24/108 (22%)
Query: 59 GLQGGP-PVGGLGLLQAPD---NSGHE--------------EEQEGERGAREKGQPRSAG 100
GL+G P P G GL+ P +GH G GA +G+P + G
Sbjct: 1225 GLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGA--EGEPGAMG 1282
Query: 101 LYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G P G P PPG + GP G S G +GLAG
Sbjct: 1283 PQGRPGPPGHVGPPGPPG----QPGPAGISAVGLKGDRGATGERGLAG 1326
Score = 28.5 bits (62), Expect = 2.2
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P GL +Q P + + G G +G G G P G P+ PPG
Sbjct: 756 GRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPG 815
Query: 119 SARQR--------RGPRGCSRQLHNHASFPAGRQGLAGFT 150
++ +G G S P GR G G T
Sbjct: 816 PTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQT 855
Score = 28.1 bits (61), Expect = 2.9
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GL G P G P + G E + A ++G P G YG P PK PG
Sbjct: 1323 GLAGLPGQPG-----PPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPG------PKGDPG 1371
Query: 119 SARQR 123
+A Q+
Sbjct: 1372 AAGQK 1376
Score = 27.7 bits (60), Expect = 3.8
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 58 DGLQGGPPVGGL--GLLQAPDNSGHEEEQ--EGERGAREKGQPRSAGLYGSPSRGGGRVP 113
DG P + G + P G + EQ EG + GQP G+ G P G +
Sbjct: 722 DGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGE 781
Query: 114 KEPPGSARQRRGPRG 128
PPG R +GP+G
Sbjct: 782 PGPPG--RGVQGPQG 794
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.004
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKE 115
P G +G P V G P G GE G A EKG P + GL G P + G
Sbjct: 592 PQGARGQPGVMGF-----PGPKG----ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 642
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A GP G + A P+G QGL G
Sbjct: 643 PPGPA----GPAG--ERGEQGAPGPSGFQGLPG 669
Score = 35.0 bits (79), Expect = 0.024
Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G +G P GL P GH + E G P G GSP G P P
Sbjct: 271 PQGARGFPGTPGL-----PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 117 PG--SARQRRGPRGCSRQLHNHAS-FPAGRQGLAG 148
G R R GP G + N PAG G G
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG 360
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G G P P G G+ G +G GA G P +AG G P G P
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARG----AQGPPGAT--GFPGAAGRVGPPGSNGNPGPPG 918
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG + + GP+G S P GR G G
Sbjct: 919 PPGPS-GKDGPKGARGD-----SGPPGRAGEPG 945
Score = 32.3 bits (72), Expect = 0.15
Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 41 EVQGGVQVRVYLMNAVPDGLQGGP-PVGGLGLLQAPDNSGHEEEQ--EGERGAR----EK 93
E GG Q+ V P G +G P P G G N G E G G R
Sbjct: 189 EKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP 248
Query: 94 GQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPA--GRQGLAG 148
G+P G G P + G R P P G AR G G + H +P G +G AG
Sbjct: 249 GKPGDDGEAGKPGKAGERGPPGPQG-ARGFPGTPGLP-GVKGHRGYPGLDGAKGEAG 303
Score = 31.6 bits (70), Expect = 0.26
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 63 GPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GPP P E+ G+RG + EKG P G G P G P PPG
Sbjct: 120 GPP--------GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG 168
Score = 31.6 bits (70), Expect = 0.26
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P+G QG P G G +P +G + KG + G+ G+P G R P P
Sbjct: 385 PEGAQG--PRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 442
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
G+ GP G Q G G+AGF
Sbjct: 443 QGAT----GPLGPKGQ--------TGEPGIAGF 463
Score = 30.4 bits (67), Expect = 0.59
Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK----------GQPRSAGLYGSPS 106
P GLQG P G + P + ++G GA K G P AG G
Sbjct: 745 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG 804
Query: 107 RGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G P P GSA R P + P G G AG
Sbjct: 805 EVG---PPGPAGSAGARGAPG------ERGETGPPGPAGFAG 837
Score = 30.0 bits (66), Expect = 0.76
Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 65 PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRR 124
P G G AP GERG E G P AG G P G K G A Q+
Sbjct: 811 PAGSAGARGAP----------GERG--ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 858
Query: 125 GPRGCSRQLHNHASFPAGRQGLAG 148
Q + A P G G+ G
Sbjct: 859 DAGAPGPQGPSGAPGPQGPTGVTG 882
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRVPK 114
GL G G ++ S E G G R E+G+ AG G+ G P
Sbjct: 294 GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA 353
Query: 115 EPPGSARQRRGP 126
PPG GP
Sbjct: 354 GPPGPVGPAGGP 365
Score = 27.3 bits (59), Expect = 5.0
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 59 GLQG--GP--PVGGLGLL--QAPDNSGHEEEQEGERGAREK----------GQPRSAGLY 102
G QG GP P G G+ Q P E + GERG + G P +G
Sbjct: 1092 GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1151
Query: 103 GSPSRGGGRVPKEPPGSARQRRGPRG 128
G+ G P+ PPG GP G
Sbjct: 1152 GASGPAGPSGPRGPPGPV----GPSG 1173
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.004
Identities = 35/93 (37%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKE 115
P G +G P V G P G GE G A EKG P + GL G P + G
Sbjct: 523 PQGARGQPGVMGF-----PGPKG----ANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG 573
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A GP G + A P+G QGL G
Sbjct: 574 PPGPA----GPAG--ERGEQGAPGPSGFQGLPG 600
Score = 35.0 bits (79), Expect = 0.024
Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G +G P GL P GH + E G P G GSP G P P
Sbjct: 202 PQGARGFPGTPGL-----PGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 256
Query: 117 PG--SARQRRGPRGCSRQLHNHAS-FPAGRQGLAG 148
G R R GP G + N PAG G G
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG 291
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G G P P G G+ G +G GA G P +AG G P G P
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARG----AQGPPGAT--GFPGAAGRVGPPGSNGNPGPPG 849
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG + + GP+G S P GR G G
Sbjct: 850 PPGPS-GKDGPKGARGD-----SGPPGRAGEPG 876
Score = 32.3 bits (72), Expect = 0.15
Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 41 EVQGGVQVRVYLMNAVPDGLQGGP-PVGGLGLLQAPDNSGHEEEQ--EGERGAR----EK 93
E GG Q+ V P G +G P P G G N G E G G R
Sbjct: 120 EKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP 179
Query: 94 GQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPA--GRQGLAG 148
G+P G G P + G R P P G AR G G + H +P G +G AG
Sbjct: 180 GKPGDDGEAGKPGKAGERGPPGPQG-ARGFPGTPGLP-GVKGHRGYPGLDGAKGEAG 234
Score = 31.6 bits (70), Expect = 0.26
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 63 GPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GPP P E+ G+RG + EKG P G G P G P PPG
Sbjct: 51 GPP--------GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPG 99
Score = 31.6 bits (70), Expect = 0.26
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P+G QG P G G +P +G + KG + G+ G+P G R P P
Sbjct: 316 PEGAQG--PRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP 373
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAGF 149
G+ GP G Q G G+AGF
Sbjct: 374 QGAT----GPLGPKGQ--------TGEPGIAGF 394
Score = 30.4 bits (67), Expect = 0.59
Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 19/102 (18%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK----------GQPRSAGLYGSPS 106
P GLQG P G + P + ++G GA K G P AG G
Sbjct: 676 PPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKG 735
Query: 107 RGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G P P GSA R P + P G G AG
Sbjct: 736 EVG---PPGPAGSAGARGAPG------ERGETGPPGPAGFAG 768
Score = 30.0 bits (66), Expect = 0.76
Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 65 PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRR 124
P G G AP GERG E G P AG G P G K G A Q+
Sbjct: 742 PAGSAGARGAP----------GERG--ETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 789
Query: 125 GPRGCSRQLHNHASFPAGRQGLAG 148
Q + A P G G+ G
Sbjct: 790 DAGAPGPQGPSGAPGPQGPTGVTG 813
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRVPK 114
GL G G ++ S E G G R E+G+ AG G+ G P
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA 284
Query: 115 EPPGSARQRRGP 126
PPG GP
Sbjct: 285 GPPGPVGPAGGP 296
Score = 27.3 bits (59), Expect = 5.0
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 20/86 (23%)
Query: 59 GLQG--GP--PVGGLGLL--QAPDNSGHEEEQEGERGAREK----------GQPRSAGLY 102
G QG GP P G G+ Q P E + GERG + G P +G
Sbjct: 1023 GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1082
Query: 103 GSPSRGGGRVPKEPPGSARQRRGPRG 128
G+ G P+ PPG GP G
Sbjct: 1083 GASGPAGPSGPRGPPGPV----GPSG 1104
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 37.7 bits (86), Expect = 0.004
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
+GL G P G Q + S E ++GE+G EKG P AGL G G P PP
Sbjct: 315 NGLHGAPGFPGQKGEQGFEGSKGETGEKGEQG--EKGDPALAGLNGENGLKGDLGPHGPP 372
Query: 118 GSARQR--RGPRG 128
G ++ GP G
Sbjct: 373 GPKGEKGDTGPPG 385
Score = 32.7 bits (73), Expect = 0.12
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 63 GPPVGGLGLLQAPDNSGHE--EEQEGERGAREKGQPRSAGLYGS-----PSRGGGRVPKE 115
GPP G GL P + G + Q+GERG G P S GL G+ P G P+
Sbjct: 1057 GPP-GKDGLPGPPGDPGPQGYRGQKGERGEPGIGLPGSPGLPGTSALGLPGSPGAPGPQG 1115
Query: 116 PPGSARQRRGPRGC 129
PPG + R P C
Sbjct: 1116 PPGPS-GRCNPEDC 1128
Score = 32.0 bits (71), Expect = 0.20
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 85 EGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG-----SARQRRGPRGCSRQLHNHASF 139
+GE G K P GL G+P G R PK G + GP+G A
Sbjct: 576 KGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQG 635
Query: 140 PAGRQGLAG 148
PAG G+ G
Sbjct: 636 PAGEPGIQG 644
Score = 28.5 bits (62), Expect = 2.2
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 92 EKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPA--GRQGLAG 148
E+G G Y S +R G P+ PPG R GP+G S+ + P G +GL G
Sbjct: 712 EEGGAGEPGKYDSMARKGDIGPRGPPG-IPGREGPKG-SKGERGYPGIPGEKGDEGLQG 768
Score = 28.1 bits (61), Expect = 2.9
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 25/81 (30%)
Query: 41 EVQGGVQVRVYLMNAVPDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSA 99
+++GGV V Y P G +G P PVG G + P
Sbjct: 830 KIKGGVNVPSYPGPPGPPGPKGDPGPVGEPGAMGLP------------------------ 865
Query: 100 GLYGSPSRGGGRVPKEPPGSA 120
GL G P G R P PPG A
Sbjct: 866 GLEGFPGVKGDRGPAGPPGIA 886
Score = 26.9 bits (58), Expect = 6.5
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 67 GGLGLLQAPDNSGHE--EEQEGERGARE-KGQPRSAGLYGSPSRGGGRVPKEPPGSARQR 123
G +G P G E + +GERG G+ GL G P G P PPG +
Sbjct: 729 GDIGPRGPPGIPGREGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRT 788
Query: 124 RGPRGCSRQLHNHASFPAGRQGLAG 148
P + + P G+ G G
Sbjct: 789 GHPGPTGAKGEKGSDGPPGKPGPPG 813
Score = 26.6 bits (57), Expect = 8.5
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 63 GPPV--GGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GPP G LG+ Q P +E Q G RG G P + G P PPG
Sbjct: 385 GPPALPGSLGI-QGPQGPPGKEGQRGRRGKT-----------GPPGKPGPPGPPGPPG 430
>gi|211059441 zinc finger protein 843 [Homo sapiens]
Length = 348
Score = 37.4 bits (85), Expect = 0.005
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 52 LMNAVPDGLQGGP--PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGG 109
L VP GL P P+GGL + Q P + +QEG G PRS G SR
Sbjct: 229 LQPLVPSGLPAVPAVPLGGLEVAQVPPATQPAAQQEGAMG------PRSCASAGRDSREA 282
Query: 110 GRVP--KEPPGSARQRR--GPRGCSR 131
+ P EP A Q R GP G +R
Sbjct: 283 VQAPGYPEPARKASQHRAAGPLGEAR 308
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKE 115
P GL G P G + P S E+ GE G +GQP G G P G + +
Sbjct: 626 PPGLPGIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEGQPGVDGATGLPGMKGEKGARG 685
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P GS ++ P +R L P G++G AG
Sbjct: 686 PNGSVGEKGDPG--NRGLPG----PPGKKGQAG 712
Score = 30.0 bits (66), Expect = 0.76
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 19/72 (26%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-------EKGQPRSAGLYGSPSRGG 109
P G +G P V G L +GE+GAR EKG P + GL G P + G
Sbjct: 659 PPGPEGQPGVDGATGLPG---------MKGEKGARGPNGSVGEKGDPGNRGLPGPPGKKG 709
Query: 110 GRVP---KEPPG 118
P PPG
Sbjct: 710 QAGPPGVMGPPG 721
Score = 28.5 bits (62), Expect = 2.2
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 60 LQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSP--SRGGGRVPKEPP 117
L GPP GL P +G Q+GE +G P + GL G P R G P PP
Sbjct: 1050 LMSGPP----GLPGNPGPAG----QKGETVVGPQGPPGAPGLPGPPGFGRPGDPGPPGPP 1101
Query: 118 G 118
G
Sbjct: 1102 G 1102
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 36.6 bits (83), Expect = 0.008
Identities = 39/106 (36%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPK 114
P G G P P+G LG A SG EE +G+ GA KG G G P + G R P
Sbjct: 1050 PTGKDGIPGPLGPLGPPGAAGPSG-EEGDKGDVGAPGHKGSKGDKGDAGPPGQPGIRGPA 1108
Query: 115 EPPG-----SARQRRGPRGCSRQLHNH-------ASFPAGRQGLAG 148
PG A+ RRGP G Q + P G QGL G
Sbjct: 1109 GHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPG 1154
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G G P G + P E +EGE+GA KG+P G G P R G + P
Sbjct: 1296 PPGASGEPGAPGPPGKRGPSGHMGREGREGEKGA--KGEP---GPDGPPGRTGPMGARGP 1350
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG R GP G P G GL G
Sbjct: 1351 PG----RVGPEGL-----RGIPGPVGEPGLLG 1373
Score = 33.1 bits (74), Expect = 0.090
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGH-----EEEQEGERG-------AREKGQPRSAGLY 102
P GLQG GPP G +G + P G + +G+RG EKGQ G
Sbjct: 513 PRGLQGPHGPP-GRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHV 571
Query: 103 GSPS---RGGGRVPKEPPGSARQ--RRGPRGCSRQLHNHASFPAGRQGLAG 148
G P G R + PPG Q GPRG + P GR G+ G
Sbjct: 572 GQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGP--RGSPGPTGRPGVTG 620
Score = 31.6 bits (70), Expect = 0.26
Identities = 39/127 (30%), Positives = 46/127 (36%), Gaps = 36/127 (28%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGH--------------EEEQEGERG------------ 89
P+GL+G P PVG GLL AP G + +GE+G
Sbjct: 1356 PEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPG 1415
Query: 90 -AREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHAS-------FPA 141
A EKG G+ G P G P P GS GP G + L S P
Sbjct: 1416 EAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSL-GHPGPPGVAGPLGQKGSKGSPGSMGPR 1474
Query: 142 GRQGLAG 148
G G AG
Sbjct: 1475 GDTGPAG 1481
Score = 29.6 bits (65), Expect = 1.00
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKE 115
G QG GPP G G+L P E GERG G P GL G R G +
Sbjct: 905 GFQGQTGPP-GPAGVL-GPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELG 962
Query: 116 PPGSARQRRGPRG 128
PPG + GP G
Sbjct: 963 PPGPL-GKEGPAG 974
Score = 29.6 bits (65), Expect = 1.00
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 57 PDGLQGGP----PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRV 112
P G +G P P+G LG P +G G++G+ KG P S G G G
Sbjct: 1431 PPGPKGDPGPPGPIGSLGHPGPPGVAG----PLGQKGS--KGSPGSMGPRGDTGPAG--- 1481
Query: 113 PKEPPGSARQRRGPR 127
P PPG+ + G R
Sbjct: 1482 PPGPPGAPAELHGLR 1496
Score = 28.1 bits (61), Expect = 2.9
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG +G P G G L P + G +G G EKG P G G P G P
Sbjct: 1252 DGAKGSVGPTGLPGDLGPPGDPG-VSGIDGSPG--EKGDPGDVGGPGPPGASGEPGAPGP 1308
Query: 117 PGSARQRRGPRG 128
PG +RGP G
Sbjct: 1309 PG----KRGPSG 1316
Score = 26.9 bits (58), Expect = 6.5
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 57 PDGLQGGP----PVGGLGLLQAPDNSG-----HEEEQEGERGAREKGQPRSAGLYGSPSR 107
P GL G P P G G+ P + G E GE+GA +G P SAG G P
Sbjct: 654 PQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGA--QGPPGSAGPPGYPGP 711
Query: 108 GG 109
G
Sbjct: 712 RG 713
Score = 26.9 bits (58), Expect = 6.5
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPK 114
P GL+G GPP G + A + G G GQ S G G + G R +
Sbjct: 990 PTGLKGDKGPP----GPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGER 1045
Query: 115 EPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG + P A+ P+G +G G
Sbjct: 1046 GPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKG 1079
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 36.6 bits (83), Expect = 0.008
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 40 QEVQGGVQVRVYLMNAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSA 99
QE++G ++R G+QG PP G + G +E G G++ + P
Sbjct: 825 QEMRGPQEIR---------GMQGPPPQGSM--------LGPPQELRGPPGSQSQQGPPQG 867
Query: 100 GLYGSPSRGGGRVPKEPPGSARQRRGP 126
L G P +GG + P P G RGP
Sbjct: 868 SL-GPPPQGGMQGPPGPQGQQNPARGP 893
Score = 33.1 bits (74), Expect = 0.090
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRS-AGLYGSPSRGGGRVPK 114
P G+Q P P G LG P G Q G G + P+ G G P G P+
Sbjct: 674 PQGMQRHPGPHGPLGPQGPPGPQGSSGPQ-GHMGPQGPPGPQGHIGPQGPPGPQGHLGPQ 732
Query: 115 EPPGSARQR--RGPRGCSRQLHNHA-SFPAGRQGLAG 148
PPG+ + GPRG H H G QG+ G
Sbjct: 733 GPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQG 769
Score = 29.3 bits (64), Expect = 1.3
Identities = 24/83 (28%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGER-----------GAREKGQPRSAGLYGSP 105
P +GG GG G Q SG +GE G G P G GS
Sbjct: 1253 PSEDRGGKGRGGPGPAQRVPKSGRSSSLDGEHHDGYHRDEPFGGPPGSGTPSRGGRSGSN 1312
Query: 106 SRGGGRVPKEPPGSARQRRGPRG 128
G + PP R G RG
Sbjct: 1313 WGRGSNMNSGPPRRGASRGGGRG 1335
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 36.2 bits (82), Expect = 0.011
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 25/95 (26%)
Query: 57 PDGLQGGPPVGGL----------------GLLQAPDNSGHEEE-----QEGERGAREKGQ 95
P G +G P V GL G L P G E +GE G+ KGQ
Sbjct: 1470 PAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGS--KGQ 1527
Query: 96 PRSAGLYGSPSRGGGRVPKEPPGSA--RQRRGPRG 128
P +G G P G PK PPG + +GPRG
Sbjct: 1528 PGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRG 1562
Score = 31.6 bits (70), Expect = 0.26
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 14/101 (13%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREK----GQPRSAGLYGSPSRGGGRV 112
P G +G PVG G P + G+ QEG +G R K GQP G G P G +
Sbjct: 1344 PPGDRG--PVGDRGDRGEPGDPGYPG-QEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKG 1400
Query: 113 PKEPPG-----SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ P G A RRG +G Q GRQGL G
Sbjct: 1401 AEGPKGKQGKAGAPGRRGVQGL--QGLPGPRGVVGRQGLEG 1439
Score = 30.4 bits (67), Expect = 0.59
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 51 YLMNAVPDGLQGGPP--VGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSR 107
+L + P L GPP G GL P G G GAR +G P G YG+P
Sbjct: 613 HLAGSTPFPLLMGPPGPKGDCGLPGPPGLPG----LPGIPGARGPRGPP---GPYGNPGL 665
Query: 108 GGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G PPG+ Q+ P + H+ A G GL+G
Sbjct: 666 PG------PPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSG 700
Score = 28.9 bits (63), Expect = 1.7
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 57 PDGLQG-----GPPVGGLGLLQAPDNSGHEEEQEGERGAR-------EKGQPRSAGLYGS 104
P G QG GPP G G P G E+ G G+R G P + GL G
Sbjct: 1073 PAGEQGSRGLKGPP-GPQGRPGRPGQQGVAGER-GHLGSRGFPGIPGPSGPPGTKGLPGE 1130
Query: 105 PSRGGGRVPKEPPGSARQRRGPRG 128
P G + P PPG GP+G
Sbjct: 1131 PGPQGPQGPIGPPG----EMGPKG 1150
Score = 27.3 bits (59), Expect = 5.0
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 17/92 (18%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G+ G P G +G P G GE G + G P S G G G R P+ P
Sbjct: 1019 PPGVPG--PKGSMGHPGMPGGMG----TPGEPGPQ--GPPGSRGPPGMRGAKGRRGPRGP 1070
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G A + +G RG P G QG G
Sbjct: 1071 DGPAGE-QGSRGLKG--------PPGPQGRPG 1093
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 35.8 bits (81), Expect = 0.014
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 62 GGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA- 120
G P + GL P ++GE+G E G P GL G P G + P+ PPG+
Sbjct: 1421 GEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAP---GLPGQPGSPGEQGPRGPPGAIG 1477
Query: 121 ----RQRRGPRG-CSRQLHNHASFPAGRQGLAG 148
R GP G + PAG +GL G
Sbjct: 1478 PKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG 1510
Score = 33.1 bits (74), Expect = 0.090
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 61 QGGPPVGGLGLLQAPDNSGHEEE-----QEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
Q G P G GL+ + G + + +GE+G E+G P G G G P
Sbjct: 2669 QSGAP-GKEGLIGPKGDRGFDGQPGPKGDQGEKG--ERGTPGIGGFPGPSGNDGSAGPPG 2725
Query: 116 PPGSARQRRGPRGCSRQ 132
PPGS RGP G Q
Sbjct: 2726 PPGSVGP-RGPEGLQGQ 2741
Score = 32.7 bits (73), Expect = 0.12
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 55 AVPDGLQGGP----PVGGLGLLQAPDNSGHEEEQ-------EGERGAREKGQPRSAGLYG 103
A P G +G P P G G + P SG + ++ G RG E+G+P G G
Sbjct: 2427 AGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRG--ERGEPGIRGEDG 2484
Query: 104 SPSRGGGRVPKEPPGSARQRRGPRG 128
P + G R PPGS R RG +G
Sbjct: 2485 RPGQEGPRGLTGPPGS-RGERGEKG 2508
Score = 32.3 bits (72), Expect = 0.15
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 57 PDGLQGGPP----------VGGLGLLQAPDNSGHEEEQEGERGAREK-GQPRSAGLYGSP 105
P GL G P GG+G P G E ++GERG + + G P G G P
Sbjct: 2029 PSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERG-ERGEKGERGEQGRDGPPGLPGTPGPP 2087
Query: 106 SRGGGRVPKEPPGSARQ-RRGPRG 128
G +V + PG +GP G
Sbjct: 2088 GPPGPKVSVDEPGPGLSGEQGPPG 2111
Score = 32.0 bits (71), Expect = 0.20
Identities = 38/123 (30%), Positives = 50/123 (40%), Gaps = 42/123 (34%)
Query: 57 PDGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVP 113
P GL G GPP G G P +G + ++ GE G++ E+G P GL G P G VP
Sbjct: 1888 PPGLPGPVGPP--GQGFPGVPGGTGPKGDR-GETGSKGEQGLPGERGLRGEP----GSVP 1940
Query: 114 K-----------------------EPPGS----ARQRRGPRGCSRQLHNHASFPAGRQGL 146
E GS +RRGP+G S + P G++G
Sbjct: 1941 NVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGE-----QGPPGKEGP 1995
Query: 147 AGF 149
GF
Sbjct: 1996 IGF 1998
Score = 30.0 bits (66), Expect = 0.76
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 81 EEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSARQRRGPRG 128
++ + GE G R GQ G G P R G P+ PPGSA +G RG
Sbjct: 1255 QKGEPGEMGLR--GQVGPPGDPGLPGRTGAPGPQGPPGSA-TAKGERG 1299
Score = 29.6 bits (65), Expect = 1.00
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
DG +G P V G L P E G G G P + G G+P G + EP
Sbjct: 2268 DGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPG 2327
Query: 118 GSA-RQRRGPRG 128
R GPRG
Sbjct: 2328 AKGDRGLPGPRG 2339
Score = 29.6 bits (65), Expect = 1.00
Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKE 115
P G +G P + G + G RG R EKG SAGL G +G V
Sbjct: 2470 PRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKG--DKGDSAVILG 2527
Query: 116 PPGSARQR-----RGPRG 128
PPG + RGPRG
Sbjct: 2528 PPGPRGAKGDMGERGPRG 2545
Score = 29.3 bits (64), Expect = 1.3
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 82 EEQEGERG-AREKGQPRSAGLYGSPS-RG-----GGRVPKEPPGSARQRRGPRGCS 130
E + G +G + E+G P G G P RG G P+ PPG A RGP G S
Sbjct: 1975 ERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPS 2030
Score = 29.3 bits (64), Expect = 1.3
Identities = 31/75 (41%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 63 GPP--VGGLGLLQAPDNSGHE--EEQEGERGAREKGQPRSAG---LYGSPSRGGGRVPKE 115
GPP G LGL P G Q G RG E GQP +G L G P R G P
Sbjct: 2383 GPPGVKGDLGLPGLPGAPGVVGFPGQTGPRG--EMGQPGPSGERGLAGPPGREGIPGPLG 2440
Query: 116 PPGSARQRRGPRGCS 130
PPG GP G S
Sbjct: 2441 PPGPPGS-VGPPGAS 2454
Score = 28.9 bits (63), Expect = 1.7
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 23/98 (23%)
Query: 59 GLQGGP----PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSR----GGG 110
GL+G P PVG G P G ++G+P G G P R G G
Sbjct: 1658 GLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEP---GPPGPPGRLVDTGPG 1714
Query: 111 RVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
K PG R + GPRG P G GL G
Sbjct: 1715 AREKGEPGD-RGQEGPRG-----------PKGDPGLPG 1740
Score = 28.5 bits (62), Expect = 2.2
Identities = 30/96 (31%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 54 NAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGARE-KGQPRSAGLYGSPSRGGGRV 112
+A G +G P G G +P +G+ G GA KG P G G P G R
Sbjct: 1291 SATAKGERGFP--GADGRPGSPGRAGNP----GTPGAPGLKGSPGLPGPRGDPGERGPRG 1344
Query: 113 PKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PK PG+ Q G G P+G G G
Sbjct: 1345 PKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRG 1380
Score = 28.1 bits (61), Expect = 2.9
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P GL G P G P ++ G + E+G P G G P G + PK
Sbjct: 2077 PPGLPGTPGPPG------PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGD 2130
Query: 117 PG-----SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G R GPRG + P G +G+AG
Sbjct: 2131 RGVPGIKGDRGEPGPRG----QDGNPGLP-GERGMAG 2162
Score = 27.7 bits (60), Expect = 3.8
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 27/110 (24%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAR----EKGQPRSAGLYGSPSRGGGRV 112
GL G GPP GL + S ++ +G+RG ++G+P G G+P G R
Sbjct: 2102 GLSGEQGPP--GLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERG 2159
Query: 113 ------------PKEPPG--SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG GP G + PAG QG +G
Sbjct: 2160 MAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAP-----GLAGPAGPQGPSG 2204
Score = 27.3 bits (59), Expect = 5.0
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGH----EEEQEGERGAREKGQ----PRSAGLYGSPSRG 108
P G +G P+G G P G ++ GERG G+ P GL G P
Sbjct: 1375 PPGPRG--PLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSP 1432
Query: 109 GGRVPKEPPGSARQRRGPRGCS 130
G + P PPG ++G +G S
Sbjct: 1433 GPQGPVGPPG----KKGEKGDS 1450
Score = 26.9 bits (58), Expect = 6.5
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Query: 57 PDGLQGGP------------PVGGLGLLQAPDNSGHEEEQEGERG----AREKGQPRSAG 100
P GL+G P P G +GL P SG Q G G E G+P + G
Sbjct: 2202 PSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQ-GSPGLPGQVGETGKPGAPG 2260
Query: 101 LYGSPSRGGGRVPKEPPGS 119
G+ + G R PGS
Sbjct: 2261 RDGASGKDGDRGSPGVPGS 2279
Score = 26.6 bits (57), Expect = 8.5
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GL+G G+GL P E GE G GQ GL G P G R K G
Sbjct: 2455 GLKGDKGDPGVGL-PGPRGERGEPGIRGEDG--RPGQEGPRGLTGPPGSRGERGEKGDVG 2511
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
SA +G +G S + P G +G G
Sbjct: 2512 SA-GLKGDKGDSAVILG----PPGPRGAKG 2536
Score = 26.6 bits (57), Expect = 8.5
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 58 DGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG G P P G +G + P+ ++ + G G R G P G P G R +
Sbjct: 2718 DGSAGPPGPPGSVGP-RGPEGLQGQKGERGPPGERVVGAP------GVPGAPGERGEQGR 2770
Query: 117 PGSARQRRGPRG 128
PG A GPRG
Sbjct: 2771 PGPA----GPRG 2778
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 35.8 bits (81), Expect = 0.014
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 55 AVPDGLQGGP-PVGGLGLLQAPDNSGHEEEQE-GERGAREKGQPRSAGLYGSPSRGGGRV 112
A P GL G +G +G + AP G + + G G EKG+ S GL G P R G +
Sbjct: 489 AGPMGLPGPKGDIGAIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKG 548
Query: 113 PKEPPGSARQ--------RRGPRG 128
+ PG + RGP+G
Sbjct: 549 MRGEPGELGEPGLPGEVGMRGPQG 572
Score = 33.9 bits (76), Expect = 0.053
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG----------AREKGQPRSAGLYGSPS 106
P GL G P G LQ ++GERG ++G+P +G+ G
Sbjct: 573 PPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQG 632
Query: 107 RGGGRVPKEP---PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G P P PGS Q+ G +G A P G QG G
Sbjct: 633 EKGDVGPAGPPGVPGSVVQQEGLKG-----EQGAPGPRGHQGAPG 672
Score = 33.9 bits (76), Expect = 0.053
Identities = 26/61 (42%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GLQG P G LG Q P + QEG GA P +AG G+P G P PPG
Sbjct: 883 GLQGRP--GELGP-QGPTGPPGAKGQEGAHGA-----PGAAGNPGAPGHVGAPGPSGPPG 934
Query: 119 S 119
S
Sbjct: 935 S 935
Score = 33.1 bits (74), Expect = 0.090
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 55 AVPDGLQGGP-------PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSR 107
A P G+QG P P G GL P G +E ++G+ G G+P AG G P
Sbjct: 1212 AGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEG-KEGRDGKPGP--PGEPGKAGEPGLPGP 1268
Query: 108 GGGRVPKEPPGSARQ--RRGPRGCSRQLHNHASFPAGRQGLAG 148
G R P G GPRG + A G++GL G
Sbjct: 1269 EGARGPPGFKGHTGDSGAPGPRG-----ESGAMGLPGQEGLPG 1306
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
P G+ G G +G P G +QEG +G E+G P G G+P G R P
Sbjct: 624 PSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKG--EQGAPGPRGHQGAPGPPGARGPIG 681
Query: 116 PPGSARQRRGPRGCSRQLHNHASF-PAGRQGLAG 148
P G R GP G P G GL G
Sbjct: 682 PEG----RDGPPGLQGLRGKKGDMGPPGIPGLLG 711
Score = 31.6 bits (70), Expect = 0.26
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
GLQG P G+ P G GE G G+P G G P + G P PPG
Sbjct: 711 GLQGPPGPPGV---PGPPGPGGSPGLPGEIGF--PGKPGPPGPTGPPGKDGPNGPPGPPG 765
Query: 119 SARQ--RRGPRGCSRQLHNHASFPAGRQGLAG 148
+ + RG G + G QGLAG
Sbjct: 766 TKGEPGERGEDGLPGKPGLRGEI--GEQGLAG 795
Score = 31.6 bits (70), Expect = 0.26
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 63 GPP--VGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
GPP G L E+ +GE+G + G P GL G P G + P PPG A
Sbjct: 846 GPPGLPGTTSLFTPHPRMPGEQGPKGEKG--DPGLPGEPGLQGRPGELGPQGPTGPPG-A 902
Query: 121 RQRRGPRGCSRQL-------HNHASFPAGRQGLAG 148
+ + G G H A P+G G G
Sbjct: 903 KGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVG 937
Score = 31.2 bits (69), Expect = 0.34
Identities = 30/97 (30%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 55 AVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVP 113
A P GL G P + G P S E +GE G + ++G P G G P G
Sbjct: 1152 AGPPGLPGPPGIAG------PQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPG---- 1201
Query: 114 KEPPGS--ARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG+ GP G P G QG +G
Sbjct: 1202 --PPGADGIAGAAGPPGIQGSPGKEG--PPGPQGPSG 1234
Score = 29.6 bits (65), Expect = 1.00
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 63 GPP--VGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEPPGS 119
GPP VG GL P G + GE+GA E+G P G G P G +P PPG
Sbjct: 931 GPPGSVGAPGLRGTPGKDG----ERGEKGAAGEEGSPGPVGPRGDPGAPG--LP-GPPGK 983
Query: 120 AR 121
+
Sbjct: 984 GK 985
Score = 29.3 bits (64), Expect = 1.3
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 22/100 (22%)
Query: 55 AVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPK 114
A P G G P GGL P +GERGA KG P + G+ G +P
Sbjct: 1514 AGPMGEPGRPGQGGLEGPSGPIG------PKGERGA--KGDPGAPGVGLRGEMGPPGIPG 1565
Query: 115 EP--PGSARQR----RGPRGCSRQLHNHASFPAGRQGLAG 148
+P PG A+ GP+G + PAG GL G
Sbjct: 1566 QPGEPGYAKDGLPGIPGPQG--------ETGPAGHPGLPG 1597
Score = 27.7 bits (60), Expect = 3.8
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 59 GLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPP 117
GL G P G GL AP G E+ G++G EKG+ GL G G P PP
Sbjct: 792 GLAGRPGEKGEAGLPGAPGFPGVRGEK-GDQG--EKGELGLPGLKGDRGEKGEAGPAGPP 848
Query: 118 G 118
G
Sbjct: 849 G 849
Score = 27.7 bits (60), Expect = 3.8
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P G QG P G G +P + G + G G GQ S G GSP G P+ P
Sbjct: 1316 PQGPQG--PRGPPGKNGSPGSPG----EPGPSGT--PGQKGSKGENGSPGLPGFLGPRGP 1367
Query: 117 PGSARQRRGP 126
PG ++ P
Sbjct: 1368 PGEPGEKGVP 1377
Score = 26.9 bits (58), Expect = 6.5
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPG 118
G G P + G + P E+ G+ G G+P G G G + K PPG
Sbjct: 1351 GENGSPGLPGFLGPRGPPGEPGEKGVPGKEGV--PGKPGEPGFKGERGDPGIKGDKGPPG 1408
Query: 119 SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
Q P + H P G G G
Sbjct: 1409 GKGQPGDPGIPGHKGHTGLMGPQGLPGENG 1438
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 35.4 bits (80), Expect = 0.018
Identities = 37/105 (35%), Positives = 42/105 (40%), Gaps = 25/105 (23%)
Query: 57 PDGLQGGPPV-GGLGLLQAPDNSGHEEEQEGERGAR-------EKGQPRSAGLYGSPSRG 108
PDG +G P V G +G SG GERGA EKG+P G G+P R
Sbjct: 617 PDGNKGEPGVVGAVGTAGPSGPSG----LPGERGAAGIPGGKGEKGEPGLRGEIGNPGRD 672
Query: 109 G-----GRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G G V P A RG G A+ PAG G G
Sbjct: 673 GARGAPGAVGAPGPAGATGDRGEAG--------AAGPAGPAGPRG 709
Score = 33.1 bits (74), Expect = 0.090
Identities = 32/82 (39%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 57 PDGLQGGP----PVGGLGLLQAPDNSGHEEE--QEGERGAR-EKGQPRSAGLYGS---PS 106
P G+QGG P G G P SG E + GERG E G P AG G P
Sbjct: 536 PQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPG 595
Query: 107 RGGGRVPKEPPGSARQRRGPRG 128
G P P GS RGP G
Sbjct: 596 ESGAAGPTGPIGS----RGPSG 613
Score = 32.7 bits (73), Expect = 0.12
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 20/99 (20%)
Query: 59 GLQGGP-PVGGLGLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRVPK 114
G+ G P P+G G P N G + G+ G +KG AG G+P G +
Sbjct: 472 GIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQ 531
Query: 115 EPPG-----SARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG + +GP G P G QGL G
Sbjct: 532 GPPGPQGVQGGKGEQGPPG-----------PPGFQGLPG 559
Score = 32.3 bits (72), Expect = 0.15
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 57 PDGLQGGP-PVGGLGLLQAPDNSGHEEE--QEGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P G QG P P G G + P G E G G R E+G P +G G G R
Sbjct: 551 PPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRG 610
Query: 113 PKEPPG 118
P PPG
Sbjct: 611 PSGPPG 616
Score = 31.6 bits (70), Expect = 0.26
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 56 VPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
+P + G GL+ P +G +GE G KG+P SAG G P G +
Sbjct: 329 IPGPVGAAGATGARGLVGEPGPAG----SKGESG--NKGEPGSAGPQGPPGPSGEEGKRG 382
Query: 116 PPGSARQRRGPRG 128
P G A GP G
Sbjct: 383 PNGEAGS-AGPPG 394
Score = 30.8 bits (68), Expect = 0.45
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 62 GGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSAR 121
G P+G +G P +G Q + A E G+P G G R P PPG A
Sbjct: 89 GPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEP------GQTGPAGARGPAGPPGKAG 142
Query: 122 QRRGPRGCSRQLHNHASFPAGRQGLAG 148
+ P R P G +G G
Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFPG 169
Score = 30.8 bits (68), Expect = 0.45
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 73 QAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSP-SRG----GGRVPKEPPGSARQRRGP 126
Q P EE + G G A G P GL GSP SRG GR P +R GP
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGP 428
Query: 127 RGCSRQLHNHASFPAGRQGLAG 148
G R + A P G GL G
Sbjct: 429 AGV-RGPNGDAGRP-GEPGLMG 448
Score = 30.8 bits (68), Expect = 0.45
Identities = 34/99 (34%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 57 PDGLQG--GP--PVGGLGLLQAPDNSGHEEEQEGERGAREK-GQPRSAGLYGSPSRGGGR 111
P G G GP PVG G P+ G+ G G P +AG G P G
Sbjct: 746 PKGENGVVGPTGPVGAAGPA-GPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS 804
Query: 112 VPKEPPGSARQR--RGPRGCSRQLHNHASFPAGRQGLAG 148
P PPG A + RGPRG P GR G G
Sbjct: 805 GPPGPPGPAGKEGLRGPRG--------DQGPVGRTGEVG 835
Score = 29.6 bits (65), Expect = 1.00
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 13/107 (12%)
Query: 55 AVPDGLQGGP-PVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSR------ 107
A P G +G P VG G+ AP +G + + GQP G G P
Sbjct: 900 AGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGA 959
Query: 108 GGGRVPKEPPGSARQ--RRGPRGCSRQLHNHASF----PAGRQGLAG 148
G P P G A + RG G S + + P+G QG+ G
Sbjct: 960 AGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRG 1006
Score = 27.7 bits (60), Expect = 3.8
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGARE-KGQPRSAGLYGSPSRGG------ 109
P G +G P GL + + +G+ GA KG+P + G G+P + G
Sbjct: 161 PQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPG 220
Query: 110 --GRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
GRV P AR G G PAG G AG
Sbjct: 221 ERGRVGAPGPAGARGSDGSVG--------PVGPAGPIGSAG 253
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 35.4 bits (80), Expect = 0.018
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P GL+G P GL G P G+E G G+ E+G S G G P R G
Sbjct: 894 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--- 950
Query: 113 PKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG+A ++ +GP G P GR G+ G
Sbjct: 951 PQGPPGAAGEKGVPGEKGPIG-----------PTGRDGVQG 980
Score = 34.7 bits (78), Expect = 0.031
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 55 AVPDGLQG--GPPVGGLGLLQAPDNSGHEEEQ-----EGERGAR-EKGQPRSAGLYGSPS 106
A P+G G GPP GG+G L P G E +GE G + +G+ G G P
Sbjct: 1102 AGPNGADGPQGPP-GGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPG 1160
Query: 107 RGGGRVPKEPPGSARQRRGPRG 128
G PK P G GP+G
Sbjct: 1161 EPGPPGPKGPTGD----DGPKG 1178
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 54 NAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVP 113
N P G G P G G + D + + ++GE G + G P G G P G R P
Sbjct: 1179 NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG--QPGSPGPTGENGPPGPLGKRGP 1236
Query: 114 KEPPGSARQRRGPRG 128
PGS R+G +G
Sbjct: 1237 AGSPGS-EGRQGGKG 1250
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG+QG PVG G P +G E+ +GE G +KG + G +G P G P
Sbjct: 976 DGVQG--PVGLPGPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQ 1032
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG+A P Q H A G +G G
Sbjct: 1033 PGAAGADGEPGARGPQGHFGAKGDEGTRGFNG 1064
Score = 31.6 bits (70), Expect = 0.26
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
+ GPP G LG + P S E ++G +GA KG P + G G G P PG
Sbjct: 1224 ENGPP-GPLGK-RGPAGSPGSEGRQGGKGA--KGDPGAIGAPGKTGPVGPAGPAGKPGPD 1279
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAG 148
R P +Q A+ AG G G
Sbjct: 1280 GLRGLPGSVGQQGRPGATGQAGPPGPVG 1307
Score = 31.2 bits (69), Expect = 0.34
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 59 GLQGGP----PVGGLGLLQAPDNSGHE-----------EEQEGERGAREKGQPRSA-GLY 102
GL G P P G LG P SG + + G G R + PR A G
Sbjct: 713 GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKS 772
Query: 103 GSPSRGGGRVPKEPPGSARQRRGPRG 128
G+ GG P PPG R GP+G
Sbjct: 773 GAKGTSGGDGPHGPPGE-RGLPGPQG 797
Score = 31.2 bits (69), Expect = 0.34
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKE 115
G QG GPP G G++ P + E GERG G P GL G+ + G +
Sbjct: 827 GFQGKTGPP-GPPGVV-GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG 884
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A + GP G FP G +GL G
Sbjct: 885 PPG-APGKDGPAGL-------RGFP-GERGLPG 908
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNS-GHEEE-----QEGERGAR-------------EKGQPR 97
P G+ G P V G+ Q P S G + E Q+G G + EKG
Sbjct: 531 PPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQG 590
Query: 98 SAGLYGSPSRGG--GRVPKEPPGSARQRRGPRG 128
GL G P G G KE P + +GP G
Sbjct: 591 KPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 623
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEPP 117
G +G P G +GL+ P G ++G+RG +G P G G P G P PP
Sbjct: 1322 GEKGHP--GLIGLIGPPGEQG----EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP 1375
Query: 118 GSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G GP+G A+ P G +G G
Sbjct: 1376 GLPGP-AGPKGA-----KGATGPGGPKGEKG 1400
Score = 30.0 bits (66), Expect = 0.76
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQ-----------EGERGAR-EKGQPRSAGLYGS 104
PDGL+G P G +G P +G G+ GA+ EKG P GL G
Sbjct: 1278 PDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGP 1335
Query: 105 PSRGGGRVPKEPPG 118
P G + + PG
Sbjct: 1336 PGEQGEKGDRGLPG 1349
Score = 28.9 bits (63), Expect = 1.7
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 58 DGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
+G +G GPP G +GL P SG EKG+ G G P G R P
Sbjct: 1057 EGTRGFNGPP-GPIGLQGLPGPSG------------EKGETGDVGPMGPPGPPGPRGPAG 1103
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G+ GP+G + N P G +G G
Sbjct: 1104 PNGA----DGPQGPPGGVGNLG--PPGEKGEPG 1130
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 35.4 bits (80), Expect = 0.018
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P GL+G P GL G P G+E G G+ E+G S G G P R G
Sbjct: 873 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--- 929
Query: 113 PKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG+A ++ +GP G P GR G+ G
Sbjct: 930 PQGPPGAAGEKGVPGEKGPIG-----------PTGRDGVQG 959
Score = 34.7 bits (78), Expect = 0.031
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 55 AVPDGLQG--GPPVGGLGLLQAPDNSGHEEEQ-----EGERGAR-EKGQPRSAGLYGSPS 106
A P+G G GPP GG+G L P G E +GE G + +G+ G G P
Sbjct: 1081 AGPNGADGPQGPP-GGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPG 1139
Query: 107 RGGGRVPKEPPGSARQRRGPRG 128
G PK P G GP+G
Sbjct: 1140 EPGPPGPKGPTGD----DGPKG 1157
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 54 NAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVP 113
N P G G P G G + D + + ++GE G + G P G G P G R P
Sbjct: 1158 NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG--QPGSPGPTGENGPPGPLGKRGP 1215
Query: 114 KEPPGSARQRRGPRG 128
PGS R+G +G
Sbjct: 1216 AGSPGS-EGRQGGKG 1229
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG+QG PVG G P +G E+ +GE G +KG + G +G P G P
Sbjct: 955 DGVQG--PVGLPGPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQ 1011
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG+A P Q H A G +G G
Sbjct: 1012 PGAAGADGEPGARGPQGHFGAKGDEGTRGFNG 1043
Score = 31.6 bits (70), Expect = 0.26
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
+ GPP G LG + P S E ++G +GA KG P + G G G P PG
Sbjct: 1203 ENGPP-GPLGK-RGPAGSPGSEGRQGGKGA--KGDPGAIGAPGKTGPVGPAGPAGKPGPD 1258
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAG 148
R P +Q A+ AG G G
Sbjct: 1259 GLRGLPGSVGQQGRPGATGQAGPPGPVG 1286
Score = 31.2 bits (69), Expect = 0.34
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 59 GLQGGP----PVGGLGLLQAPDNSGHE-----------EEQEGERGAREKGQPRSA-GLY 102
GL G P P G LG P SG + + G G R + PR A G
Sbjct: 692 GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKS 751
Query: 103 GSPSRGGGRVPKEPPGSARQRRGPRG 128
G+ GG P PPG R GP+G
Sbjct: 752 GAKGTSGGDGPHGPPGE-RGLPGPQG 776
Score = 31.2 bits (69), Expect = 0.34
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKE 115
G QG GPP G G++ P + E GERG G P GL G+ + G +
Sbjct: 806 GFQGKTGPP-GPPGVV-GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG 863
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A + GP G FP G +GL G
Sbjct: 864 PPG-APGKDGPAGL-------RGFP-GERGLPG 887
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNS-GHEEE-----QEGERGAR-------------EKGQPR 97
P G+ G P V G+ Q P S G + E Q+G G + EKG
Sbjct: 510 PPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQG 569
Query: 98 SAGLYGSPSRGG--GRVPKEPPGSARQRRGPRG 128
GL G P G G KE P + +GP G
Sbjct: 570 KPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 602
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEPP 117
G +G P G +GL+ P G ++G+RG +G P G G P G P PP
Sbjct: 1301 GEKGHP--GLIGLIGPPGEQG----EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP 1354
Query: 118 GSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G GP+G A+ P G +G G
Sbjct: 1355 GLPGP-AGPKGA-----KGATGPGGPKGEKG 1379
Score = 30.0 bits (66), Expect = 0.76
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQ-----------EGERGAR-EKGQPRSAGLYGS 104
PDGL+G P G +G P +G G+ GA+ EKG P GL G
Sbjct: 1257 PDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGP 1314
Query: 105 PSRGGGRVPKEPPG 118
P G + + PG
Sbjct: 1315 PGEQGEKGDRGLPG 1328
Score = 28.9 bits (63), Expect = 1.7
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 58 DGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
+G +G GPP G +GL P SG EKG+ G G P G R P
Sbjct: 1036 EGTRGFNGPP-GPIGLQGLPGPSG------------EKGETGDVGPMGPPGPPGPRGPAG 1082
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G+ GP+G + N P G +G G
Sbjct: 1083 PNGA----DGPQGPPGGVGNLG--PPGEKGEPG 1109
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 35.4 bits (80), Expect = 0.018
Identities = 34/101 (33%), Positives = 44/101 (43%), Gaps = 23/101 (22%)
Query: 57 PDGLQGGPPVGGL-GLLQAPDNSGHEEEQ--EGERGAR-EKGQPRSAGLYGSPSRGGGRV 112
P GL+G P GL G P G+E G G+ E+G S G G P R G
Sbjct: 980 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPG--- 1036
Query: 113 PKEPPGSARQR-----RGPRGCSRQLHNHASFPAGRQGLAG 148
P+ PPG+A ++ +GP G P GR G+ G
Sbjct: 1037 PQGPPGAAGEKGVPGEKGPIG-----------PTGRDGVQG 1066
Score = 34.7 bits (78), Expect = 0.031
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 55 AVPDGLQG--GPPVGGLGLLQAPDNSGHEEEQ-----EGERGAR-EKGQPRSAGLYGSPS 106
A P+G G GPP GG+G L P G E +GE G + +G+ G G P
Sbjct: 1188 AGPNGADGPQGPP-GGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPG 1246
Query: 107 RGGGRVPKEPPGSARQRRGPRG 128
G PK P G GP+G
Sbjct: 1247 EPGPPGPKGPTGD----DGPKG 1264
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 54 NAVPDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVP 113
N P G G P G G + D + + ++GE G + G P G G P G R P
Sbjct: 1265 NPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG--QPGSPGPTGENGPPGPLGKRGP 1322
Query: 114 KEPPGSARQRRGPRG 128
PGS R+G +G
Sbjct: 1323 AGSPGS-EGRQGGKG 1336
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 58 DGLQGGPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKEP 116
DG+QG PVG G P +G E+ +GE G +KG + G +G P G P
Sbjct: 1062 DGVQG--PVGLPGPAGPPGVAG-EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQ 1118
Query: 117 PGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PG+A P Q H A G +G G
Sbjct: 1119 PGAAGADGEPGARGPQGHFGAKGDEGTRGFNG 1150
Score = 31.6 bits (70), Expect = 0.26
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
+ GPP G LG + P S E ++G +GA KG P + G G G P PG
Sbjct: 1310 ENGPP-GPLGK-RGPAGSPGSEGRQGGKGA--KGDPGAIGAPGKTGPVGPAGPAGKPGPD 1365
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQGLAG 148
R P +Q A+ AG G G
Sbjct: 1366 GLRGLPGSVGQQGRPGATGQAGPPGPVG 1393
Score = 31.2 bits (69), Expect = 0.34
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 59 GLQGGP----PVGGLGLLQAPDNSGHE-----------EEQEGERGAREKGQPRSA-GLY 102
GL G P P G LG P SG + + G G R + PR A G
Sbjct: 799 GLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKS 858
Query: 103 GSPSRGGGRVPKEPPGSARQRRGPRG 128
G+ GG P PPG R GP+G
Sbjct: 859 GAKGTSGGDGPHGPPGE-RGLPGPQG 883
Score = 31.2 bits (69), Expect = 0.34
Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 59 GLQG--GPPVGGLGLLQAPDNSGHEEEQEGERG-AREKGQPRSAGLYGSPSRGGGRVPKE 115
G QG GPP G G++ P + E GERG G P GL G+ + G +
Sbjct: 913 GFQGKTGPP-GPPGVV-GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG 970
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
PPG A + GP G FP G +GL G
Sbjct: 971 PPG-APGKDGPAGL-------RGFP-GERGLPG 994
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNS-GHEEE-----QEGERGAR-------------EKGQPR 97
P G+ G P V G+ Q P S G + E Q+G G + EKG
Sbjct: 617 PPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQG 676
Query: 98 SAGLYGSPSRGG--GRVPKEPPGSARQRRGPRG 128
GL G P G G KE P + +GP G
Sbjct: 677 KPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSG 709
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 59 GLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAR-EKGQPRSAGLYGSPSRGGGRVPKEPP 117
G +G P G +GL+ P G ++G+RG +G P G G P G P PP
Sbjct: 1408 GEKGHP--GLIGLIGPPGEQG----EKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPP 1461
Query: 118 GSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
G GP+G A+ P G +G G
Sbjct: 1462 GLPGP-AGPKGA-----KGATGPGGPKGEKG 1486
Score = 30.0 bits (66), Expect = 0.76
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQ-----------EGERGAR-EKGQPRSAGLYGS 104
PDGL+G P G +G P +G G+ GA+ EKG P GL G
Sbjct: 1364 PDGLRGLP--GSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGP 1421
Query: 105 PSRGGGRVPKEPPG 118
P G + + PG
Sbjct: 1422 PGEQGEKGDRGLPG 1435
Score = 28.9 bits (63), Expect = 1.7
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 58 DGLQG--GPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKE 115
+G +G GPP G +GL P SG EKG+ G G P G R P
Sbjct: 1143 EGTRGFNGPP-GPIGLQGLPGPSG------------EKGETGDVGPMGPPGPPGPRGPAG 1189
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQGLAG 148
P G+ GP+G + N P G +G G
Sbjct: 1190 PNGA----DGPQGPPGGVGNLG--PPGEKGEPG 1216
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 35.4 bits (80), Expect = 0.018
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P +G PP GG P G E + G + +G P G P GG P+ P
Sbjct: 180 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGP 239
Query: 117 PGSARQRRGP 126
P + +GP
Sbjct: 240 PPHPGKPQGP 249
Score = 34.7 bits (78), Expect = 0.031
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGL-YGSPSRGGGRVPKE 115
P +G PP GG P G E Q + G + +G P G G P +GG +
Sbjct: 75 PGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 134
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQG 145
PP + P G Q N + P R G
Sbjct: 135 PPRPGK----PEGPPPQGGNQSQGPPPRPG 160
Score = 32.7 bits (73), Expect = 0.12
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGL-YGSPSRGGGRVPKE 115
P +G PP GG P G E + G + +G P G G P +GG +
Sbjct: 54 PGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGP 113
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQG 145
PP + P G Q N + P R G
Sbjct: 114 PPRPGK----PEGPPPQGGNQSQGPPPRPG 139
Score = 32.7 bits (73), Expect = 0.12
Identities = 20/70 (28%), Positives = 26/70 (37%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P +G PP GG P G E + G + +G P G P G P+ P
Sbjct: 201 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRP 260
Query: 117 PGSARQRRGP 126
P R + P
Sbjct: 261 PPPGRPQGPP 270
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGL-YGSPSRGGGRVPKE 115
P +G PP GG P G E + G + +G P G G P +GG +
Sbjct: 117 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 176
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQG 145
PP + P G Q N + P R G
Sbjct: 177 PPHPGK----PEGPPPQGGNQSQGPPPRPG 202
Score = 32.3 bits (72), Expect = 0.15
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGL-YGSPSRGGGRVPKE 115
P +G PP GG P G E + G + +G P G G P +GG +
Sbjct: 138 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGP 197
Query: 116 PPGSARQRRGPRGCSRQLHNHASFPAGRQG 145
PP + P G Q N + P R G
Sbjct: 198 PPRPGK----PEGPPPQGGNQSQGPPPRPG 223
Score = 32.0 bits (71), Expect = 0.20
Identities = 20/70 (28%), Positives = 27/70 (38%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P +G PP GG P + G E + G + +G P G P GG + P
Sbjct: 159 PGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 218
Query: 117 PGSARQRRGP 126
P + GP
Sbjct: 219 PPRPGKPEGP 228
Score = 31.6 bits (70), Expect = 0.26
Identities = 20/70 (28%), Positives = 26/70 (37%)
Query: 57 PDGLQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEP 116
P +G PP GG P G E + G + +G P G P GG + P
Sbjct: 96 PGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 155
Query: 117 PGSARQRRGP 126
P + GP
Sbjct: 156 PPRPGKPEGP 165
Score = 28.5 bits (62), Expect = 2.2
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 61 QGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPRSAGLYGSPSRGGGRVPKEPPGSA 120
+G P GG + P G E + + G + +G P G P GG + PP
Sbjct: 37 EGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRP 96
Query: 121 RQRRGPRGCSRQLHNHASFPAGRQG 145
+ P G Q N + P R G
Sbjct: 97 GK---PEGQPPQGGNQSQGPPPRPG 118
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 35.0 bits (79), Expect = 0.024
Identities = 36/108 (33%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 40 QEVQGGVQVRVYLMNAVPDG--LQGGPPVGGLGLLQAPDNSGHEEEQEGERGAREKGQPR 97
Q+ Q RV + V DG Q G P G LQ GH ++Q + A+
Sbjct: 278 QQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQ-----GHAQQQ-AQHQAQAAQAAA 331
Query: 98 SAGLYGSPSRGGGRVPKEPPGSARQRRGPRGCSRQLHNHASFPAGRQG 145
+A GS G G P PGSA Q S L +HA+ PA QG
Sbjct: 332 AAISVGSGGAGLGAHPGHQPGSAGQ-------SPDLAHHAASPAALQG 372
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,273,691
Number of Sequences: 37866
Number of extensions: 420839
Number of successful extensions: 3055
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 222
Number of HSP's that attempted gapping in prelim test: 2041
Number of HSP's gapped (non-prelim): 1045
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.