Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PSG11 Sequence: fasta or formatted (335aa) NCBI GI: 164663836
Description:

pregnancy specific beta-1-glycoprotein 11 isoform 1

Referenced in:

Ovary, Uterus and Placenta

Other entries for this name:
alt prot [213aa] pregnancy specific beta-1-glycoprotein 11 isoform 2
alt prot [213aa] pregnancy specific beta-1-glycoprotein 11 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         18           1
 C cysteine            1.5          5           1
 D aspartate           2.7          9           1
 E glutamate           4.5         15           2
 F phenylalanine       3.3         11           1
 G glycine             7.5         25           1
 H histidine           2.1          7           1
 I isoleucine          6.0         20           3
 K lysine              3.3         11           1
 L leucine            11.0         37           3
 M methionine          1.8          6           1
 N asparagine          6.3         21           2
 P proline             7.8         26           2
 Q glutamine           3.6         12           1
 R arginine            3.6         12           1
 S serine              9.0         30           3
 T threonine           9.3         31           2
 V valine              4.2         14           2
 W tryptophan          2.1          7           2
 Y tyrosine            5.4         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pregnancy specific beta-1-glycoprotein 11 isoform 1... 
PSG2                  0.891   pregnancy specific beta-1-glycoprotein 2 
PSG4                  0.796   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG5                  0.713   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.713   pregnancy specific beta-1-glycoprotein 5 
PSG7                  0.663   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG3                  0.645   pregnancy specific beta-1-glycoprotein 3 
PSG1                  0.645   pregnancy specific beta-1-glycoprotein 1 
PSG8                  0.637   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.637   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG6                  0.628   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG6                  0.628   pregnancy specific beta-1-glycoprotein 6 isoform b [...
PSG4                  0.624   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG9                  0.599   pregnancy specific beta-1-glycoprotein 9 
PSG11                 0.561   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.561   pregnancy specific beta-1-glycoprotein 11 isoform 2...
CEACAM8               0.525   carcinoembryonic antigen-related cell adhesion molec...
CEACAM6               0.506   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.494   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.494   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.485   carcinoembryonic antigen-related cell adhesion molec...
PSG8                  0.352   pregnancy specific beta-1-glycoprotein 8 isoform c ...
CEACAM7               0.319   carcinoembryonic antigen-related cell adhesion molecu...
CEACAM21              0.224   carcinoembryonic antigen-related cell adhesion molec...
CEACAM21              0.222   carcinoembryonic antigen-related cell adhesion mole...
CEACAM16              0.210   carcinoembryonic antigen-related cell adhesion molec...
CEACAM3               0.199   carcinoembryonic antigen-related cell adhesion mole...
CEACAM4               0.164   carcinoembryonic antigen-related cell adhesion molec...
CEACAM20              0.154   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.154   carcinoembryonic antigen-related cell adhesion mole...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press