Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PSG11 Sequence: fasta or formatted (213aa) NCBI GI: 164663824
Description:

pregnancy specific beta-1-glycoprotein 11 isoform 2

Referenced in:

Ovary, Uterus and Placenta

Other entries for this name:
alt mRNA [213aa] pregnancy specific beta-1-glycoprotein 11 isoform 2
alt prot [335aa] pregnancy specific beta-1-glycoprotein 11 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         12           1
 C cysteine            2.3          5           1
 D aspartate           1.9          4           1
 E glutamate           5.2         11           2
 F phenylalanine       3.8          8           1
 G glycine             6.6         14           1
 H histidine           1.9          4           1
 I isoleucine          4.7         10           1
 K lysine              3.3          7           1
 L leucine            10.3         22           3
 M methionine          2.3          5           1
 N asparagine          7.0         15           2
 P proline             9.9         21           2
 Q glutamine           2.8          6           1
 R arginine            3.3          7           1
 S serine             11.3         24           3
 T threonine           9.4         20           1
 V valine              2.8          6           1
 W tryptophan          2.3          5           2
 Y tyrosine            3.3          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pregnancy specific beta-1-glycoprotein 11 isoform 2... 
PSG11                 1.000   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.891   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG2                  0.735   pregnancy specific beta-1-glycoprotein 2 
PSG4                  0.664   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG3                  0.524   pregnancy specific beta-1-glycoprotein 3 
PSG7                  0.505   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG5                  0.500   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.500   pregnancy specific beta-1-glycoprotein 5 
PSG6                  0.495   pregnancy specific beta-1-glycoprotein 6 isoform b [...
PSG6                  0.493   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG4                  0.483   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG8                  0.483   pregnancy specific beta-1-glycoprotein 8 isoform c ...
PSG8                  0.481   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.481   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG9                  0.467   pregnancy specific beta-1-glycoprotein 9 
PSG1                  0.464   pregnancy specific beta-1-glycoprotein 1 
CEACAM8               0.462   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.448   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.448   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.441   carcinoembryonic antigen-related cell adhesion molec...
CEACAM6               0.438   carcinoembryonic antigen-related cell adhesion molec...
CEACAM20              0.239   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.239   carcinoembryonic antigen-related cell adhesion mole...
CEACAM7               0.209   carcinoembryonic antigen-related cell adhesion molecu...
CEACAM16              0.190   carcinoembryonic antigen-related cell adhesion molec...
CEACAM20              0.135   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.135   carcinoembryonic antigen-related cell adhesion mole...
CD22                  0.111   CD22 molecule 
HSPG2                 0.104   heparan sulfate proteoglycan 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press