Guide to the Human Genome
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Name: CEACAM20 Sequence: fasta or formatted (596aa) NCBI GI: 156564378
Description:

carcinoembryonic antigen-related cell adhesion molecule 20 5L

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [491aa] carcinoembryonic antigen-related cell adhesion molecule 20 4S
alt prot [503aa] carcinoembryonic antigen-related cell adhesion molecule 20 4L
alt prot [584aa] carcinoembryonic antigen-related cell adhesion molecule 20 5S
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         35           3
 C cysteine            1.7         10           1
 D aspartate           3.2         19           1
 E glutamate           7.7         46           2
 F phenylalanine       1.7         10           1
 G glycine             5.2         31           1
 H histidine           3.0         18           2
 I isoleucine          5.7         34           2
 K lysine              2.9         17           1
 L leucine            10.4         62           2
 M methionine          1.8         11           1
 N asparagine          4.0         24           2
 P proline             7.6         45           3
 Q glutamine           4.0         24           1
 R arginine            4.9         29           2
 S serine             11.2         67           3
 T threonine           7.6         45           2
 V valine              7.0         42           2
 W tryptophan          2.0         12           1
 Y tyrosine            2.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carcinoembryonic antigen-related cell adhesion mole... 
CEACAM20              0.970   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.569   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.569   carcinoembryonic antigen-related cell adhesion mole...
CEACAM5               0.150   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.121   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.121   carcinoembryonic antigen-related cell adhesion molec...
PSG9                  0.110   pregnancy specific beta-1-glycoprotein 9 
PSG4                  0.105   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG3                  0.105   pregnancy specific beta-1-glycoprotein 3 
PSG1                  0.105   pregnancy specific beta-1-glycoprotein 1 
PSG8                  0.104   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG8                  0.102   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG6                  0.102   pregnancy specific beta-1-glycoprotein 6 isoform b [...
CEACAM16              0.101   carcinoembryonic antigen-related cell adhesion molec...
PSG7                  0.101   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG6                  0.099   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG11                 0.088   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG11                 0.086   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.086   pregnancy specific beta-1-glycoprotein 11 isoform 2...
CEACAM6               0.086   carcinoembryonic antigen-related cell adhesion molec...
PSG8                  0.083   pregnancy specific beta-1-glycoprotein 8 isoform c ...
PSG2                  0.082   pregnancy specific beta-1-glycoprotein 2 
CEACAM8               0.078   carcinoembryonic antigen-related cell adhesion molec...
PSG4                  0.077   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG5                  0.072   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.072   pregnancy specific beta-1-glycoprotein 5 
HMCN2                 0.053   PREDICTED: hemicentin 2 
HMCN2                 0.053   PREDICTED: hemicentin 2 
HMCN2                 0.053   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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