Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CEACAM20 Sequence: fasta or formatted (584aa) NCBI GI: 156564393
Description:

carcinoembryonic antigen-related cell adhesion molecule 20 5S

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [596aa] carcinoembryonic antigen-related cell adhesion molecule 20 5L
alt prot [491aa] carcinoembryonic antigen-related cell adhesion molecule 20 4S
alt prot [503aa] carcinoembryonic antigen-related cell adhesion molecule 20 4L
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         35           3
 C cysteine            1.7         10           1
 D aspartate           3.1         18           1
 E glutamate           7.4         43           2
 F phenylalanine       1.7         10           1
 G glycine             5.3         31           1
 H histidine           3.1         18           2
 I isoleucine          5.8         34           2
 K lysine              2.9         17           1
 L leucine            10.4         61           2
 M methionine          1.7         10           1
 N asparagine          4.1         24           2
 P proline             7.2         42           3
 Q glutamine           3.9         23           1
 R arginine            5.0         29           2
 S serine             11.5         67           3
 T threonine           7.5         44           2
 V valine              7.2         42           2
 W tryptophan          2.1         12           1
 Y tyrosine            2.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carcinoembryonic antigen-related cell adhesion mole... 
CEACAM20              0.992   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.582   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.582   carcinoembryonic antigen-related cell adhesion mole...
CEACAM5               0.154   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.123   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.123   carcinoembryonic antigen-related cell adhesion molec...
PSG9                  0.112   pregnancy specific beta-1-glycoprotein 9 
PSG4                  0.108   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG3                  0.108   pregnancy specific beta-1-glycoprotein 3 
PSG1                  0.107   pregnancy specific beta-1-glycoprotein 1 
PSG8                  0.106   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG8                  0.104   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG6                  0.104   pregnancy specific beta-1-glycoprotein 6 isoform b [...
CEACAM16              0.103   carcinoembryonic antigen-related cell adhesion molec...
PSG7                  0.103   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG6                  0.101   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG11                 0.089   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG11                 0.088   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.088   pregnancy specific beta-1-glycoprotein 11 isoform 2...
CEACAM6               0.088   carcinoembryonic antigen-related cell adhesion molec...
PSG8                  0.085   pregnancy specific beta-1-glycoprotein 8 isoform c ...
PSG2                  0.083   pregnancy specific beta-1-glycoprotein 2 
CEACAM8               0.080   carcinoembryonic antigen-related cell adhesion molec...
PSG4                  0.079   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG5                  0.074   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.074   pregnancy specific beta-1-glycoprotein 5 
HMCN2                 0.054   PREDICTED: hemicentin 2 
HMCN2                 0.054   PREDICTED: hemicentin 2 
HMCN2                 0.054   PREDICTED: hemicentin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press