Guide to the Human Genome
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Name: CEACAM6 Sequence: fasta or formatted (344aa) NCBI GI: 40255013
Description:

carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen)

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         25           2
 C cysteine            1.5          5           1
 D aspartate           2.3          8           1
 E glutamate           4.7         16           2
 F phenylalanine       2.3          8           1
 G glycine             6.7         23           1
 H histidine           1.5          5           1
 I isoleucine          4.9         17           1
 K lysine              2.6          9           1
 L leucine             9.3         32           3
 M methionine          1.2          4           1
 N asparagine          8.7         30           2
 P proline             8.4         29           2
 Q glutamine           4.7         16           2
 R arginine            2.9         10           1
 S serine              9.0         31           2
 T threonine           8.7         30           2
 V valine              7.8         27           1
 W tryptophan          1.7          6           2
 Y tyrosine            3.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carcinoembryonic antigen-related cell adhesion molec... 
CEACAM5               0.790   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.789   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.789   carcinoembryonic antigen-related cell adhesion molec...
CEACAM8               0.773   carcinoembryonic antigen-related cell adhesion molec...
PSG2                  0.518   pregnancy specific beta-1-glycoprotein 2 
PSG5                  0.510   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.510   pregnancy specific beta-1-glycoprotein 5 
PSG11                 0.501   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG4                  0.498   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
CEACAM7               0.445   carcinoembryonic antigen-related cell adhesion molecu...
PSG7                  0.417   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG8                  0.414   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.414   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG1                  0.405   pregnancy specific beta-1-glycoprotein 1 
PSG4                  0.400   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG3                  0.396   pregnancy specific beta-1-glycoprotein 3 
PSG9                  0.394   pregnancy specific beta-1-glycoprotein 9 
PSG6                  0.391   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG6                  0.391   pregnancy specific beta-1-glycoprotein 6 isoform b [...
CEACAM3               0.332   carcinoembryonic antigen-related cell adhesion mole...
PSG8                  0.304   pregnancy specific beta-1-glycoprotein 8 isoform c ...
CEACAM21              0.301   carcinoembryonic antigen-related cell adhesion molec...
CEACAM21              0.298   carcinoembryonic antigen-related cell adhesion mole...
PSG11                 0.273   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.273   pregnancy specific beta-1-glycoprotein 11 isoform 2...
CEACAM16              0.220   carcinoembryonic antigen-related cell adhesion molec...
CEACAM4               0.207   carcinoembryonic antigen-related cell adhesion molec...
CEACAM20              0.149   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.149   carcinoembryonic antigen-related cell adhesion mole...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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