Guide to the Human Genome
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Name: CEACAM4 Sequence: fasta or formatted (244aa) NCBI GI: 71143132
Description:

carcinoembryonic antigen-related cell adhesion molecule 4

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         27           2
 C cysteine            1.2          3           1
 D aspartate           3.7          9           1
 E glutamate           3.7          9           2
 F phenylalanine       2.0          5           1
 G glycine             8.6         21           2
 H histidine           3.3          8           1
 I isoleucine          6.1         15           1
 K lysine              1.6          4           1
 L leucine            10.2         25           3
 M methionine          0.4          1           1
 N asparagine          3.3          8           2
 P proline             8.6         21           3
 Q glutamine           4.5         11           1
 R arginine            4.1         10           1
 S serine              8.2         20           2
 T threonine           7.8         19           2
 V valine              6.1         15           2
 W tryptophan          1.2          3           1
 Y tyrosine            4.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carcinoembryonic antigen-related cell adhesion molec... 
CEACAM3               0.622   carcinoembryonic antigen-related cell adhesion mole...
CEACAM6               0.297   carcinoembryonic antigen-related cell adhesion molec...
CEACAM8               0.285   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.268   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.268   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.261   carcinoembryonic antigen-related cell adhesion molec...
CEACAM21              0.251   carcinoembryonic antigen-related cell adhesion molec...
CEACAM21              0.251   carcinoembryonic antigen-related cell adhesion mole...
PSG5                  0.248   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.248   pregnancy specific beta-1-glycoprotein 5 
PSG7                  0.244   pregnancy specific beta-1-glycoprotein 7 precursor ...
CEACAM7               0.244   carcinoembryonic antigen-related cell adhesion molecu...
PSG2                  0.242   pregnancy specific beta-1-glycoprotein 2 
PSG8                  0.240   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.240   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG4                  0.236   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG4                  0.236   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG11                 0.234   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG6                  0.227   pregnancy specific beta-1-glycoprotein 6 isoform a [H...
PSG6                  0.227   pregnancy specific beta-1-glycoprotein 6 isoform b [...
PSG3                  0.227   pregnancy specific beta-1-glycoprotein 3 
PSG1                  0.227   pregnancy specific beta-1-glycoprotein 1 
PSG9                  0.225   pregnancy specific beta-1-glycoprotein 9 
CEACAM16              0.108   carcinoembryonic antigen-related cell adhesion molec...
CEACAM19              0.089   carcinoembryonic antigen-related cell adhesion mole...
CEACAM19              0.089   carcinoembryonic antigen-related cell adhesion molec...
CEACAM18              0.062   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.049   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.049   carcinoembryonic antigen-related cell adhesion mole...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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