Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PSG6 Sequence: fasta or formatted (435aa) NCBI GI: 4506175
Description:

pregnancy specific beta-1-glycoprotein 6 isoform a

Referenced in:

Ovary, Uterus and Placenta

Other entries for this name:
alt prot [424aa] pregnancy specific beta-1-glycoprotein 6 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         18           1
 C cysteine            1.6          7           1
 D aspartate           2.8         12           1
 E glutamate           4.6         20           1
 F phenylalanine       2.1          9           1
 G glycine             6.4         28           2
 H histidine           1.6          7           1
 I isoleucine          6.7         29           2
 K lysine              4.4         19           2
 L leucine            11.0         48           3
 M methionine          1.4          6           1
 N asparagine          6.4         28           2
 P proline             8.3         36           2
 Q glutamine           3.7         16           1
 R arginine            4.6         20           1
 S serine              8.3         36           3
 T threonine           8.3         36           2
 V valine              5.7         25           2
 W tryptophan          1.8          8           2
 Y tyrosine            6.2         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pregnancy specific beta-1-glycoprotein 6 isoform a [H... 
PSG6                  0.948   pregnancy specific beta-1-glycoprotein 6 isoform b [...
PSG7                  0.852   pregnancy specific beta-1-glycoprotein 7 precursor ...
PSG3                  0.846   pregnancy specific beta-1-glycoprotein 3 
PSG4                  0.842   pregnancy specific beta-1-glycoprotein 4 isoform 1 [...
PSG9                  0.835   pregnancy specific beta-1-glycoprotein 9 
PSG8                  0.830   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.829   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG1                  0.821   pregnancy specific beta-1-glycoprotein 1 
PSG8                  0.548   pregnancy specific beta-1-glycoprotein 8 isoform c ...
PSG11                 0.483   pregnancy specific beta-1-glycoprotein 11 isoform 1...
PSG4                  0.478   pregnancy specific beta-1-glycoprotein 4 isoform 2 [...
PSG2                  0.476   pregnancy specific beta-1-glycoprotein 2 
PSG5                  0.385   pregnancy specific beta-1-glycoprotein 5 
PSG5                  0.385   pregnancy specific beta-1-glycoprotein 5 
CEACAM6               0.304   carcinoembryonic antigen-related cell adhesion molec...
CEACAM8               0.296   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.295   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.295   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.295   carcinoembryonic antigen-related cell adhesion molec...
CEACAM7               0.248   carcinoembryonic antigen-related cell adhesion molecu...
PSG11                 0.239   pregnancy specific beta-1-glycoprotein 11 isoform 2...
PSG11                 0.239   pregnancy specific beta-1-glycoprotein 11 isoform 2...
CEACAM21              0.171   carcinoembryonic antigen-related cell adhesion molec...
CEACAM21              0.171   carcinoembryonic antigen-related cell adhesion mole...
CEACAM3               0.154   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.133   carcinoembryonic antigen-related cell adhesion mole...
CEACAM20              0.133   carcinoembryonic antigen-related cell adhesion mole...
CEACAM4               0.123   carcinoembryonic antigen-related cell adhesion molec...
CEACAM16              0.123   carcinoembryonic antigen-related cell adhesion molec...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press