Search of human proteins with 157738665

Search of human proteins with 157738665

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157738665 poly (ADP-ribose) polymerase family, member 10
[Homo sapiens]
         (1025 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Hom...  2050   0.0  
gi|22749259 poly (ADP-ribose) polymerase family, member 15 isofo...   134   4e-31
gi|165377137 poly (ADP-ribose) polymerase family, member 15 isof...   134   4e-31
gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Hom...   133   1e-30
gi|38524594 TCDD-inducible poly(ADP-ribose) polymerase [Homo sap...   111   3e-24
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]               93   1e-18
gi|194328777 poly (ADP-ribose) polymerase family, member 11 [Hom...    89   2e-17
gi|226371716 poly (ADP-ribose) polymerase family, member 9 isofo...    79   3e-14
gi|226371714 poly (ADP-ribose) polymerase family, member 9 isofo...    79   3e-14
gi|226371712 poly (ADP-ribose) polymerase family, member 9 isofo...    79   3e-14
gi|226371710 poly (ADP-ribose) polymerase family, member 9 isofo...    79   3e-14
gi|226371706 poly (ADP-ribose) polymerase family, member 9 isofo...    79   3e-14
gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens]     64   1e-09
gi|154759255 collagen, type XXVIII precursor [Homo sapiens]            45   4e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                45   5e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       44   0.001
gi|62510076 hypothetical protein LOC90835 [Homo sapiens]               44   0.001
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    42   0.003
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    42   0.003
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    42   0.003
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    42   0.003
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               42   0.003
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    42   0.004
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    42   0.004
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    42   0.004
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     41   0.007
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               41   0.007
gi|13376842 tankyrase, TRF1-interacting ankyrin-related ADP-ribo...    41   0.007
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               41   0.007
gi|61699226 pulmonary surfactant-associated protein D precursor ...    40   0.011

>gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Homo
            sapiens]
          Length = 1025

 Score = 2050 bits (5310), Expect = 0.0
 Identities = 1025/1025 (100%), Positives = 1025/1025 (100%)

Query: 1    MVAMAEAEAGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPA 60
            MVAMAEAEAGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPA
Sbjct: 1    MVAMAEAEAGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPA 60

Query: 61   DAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLPPGTTPQRLEQHVQALLRASGLPV 120
            DAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLPPGTTPQRLEQHVQALLRASGLPV
Sbjct: 61   DAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLPPGTTPQRLEQHVQALLRASGLPV 120

Query: 121  QPCCALASPRPDRALVQLPKPLSEADVRVLEEQAQNLGLEGTLVSLARVPQARAVRVVGD 180
            QPCCALASPRPDRALVQLPKPLSEADVRVLEEQAQNLGLEGTLVSLARVPQARAVRVVGD
Sbjct: 121  QPCCALASPRPDRALVQLPKPLSEADVRVLEEQAQNLGLEGTLVSLARVPQARAVRVVGD 180

Query: 181  GASVDLLLLELYLENERRSGGGPLEDLQRLPGPLGTVASFQQWQVAERVLQQEHRLQGSE 240
            GASVDLLLLELYLENERRSGGGPLEDLQRLPGPLGTVASFQQWQVAERVLQQEHRLQGSE
Sbjct: 181  GASVDLLLLELYLENERRSGGGPLEDLQRLPGPLGTVASFQQWQVAERVLQQEHRLQGSE 240

Query: 241  LSLVPHYDILEPEELAENTSGGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEE 300
            LSLVPHYDILEPEELAENTSGGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEE
Sbjct: 241  LSLVPHYDILEPEELAENTSGGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEE 300

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
            PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE
Sbjct: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360

Query: 361  GLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEIT 420
            GLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEIT
Sbjct: 361  GLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEIT 420

Query: 421  MGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPGAMRFLQLYHEDLLAGLGDVALLPLEGP 480
            MGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPGAMRFLQLYHEDLLAGLGDVALLPLEGP
Sbjct: 421  MGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPGAMRFLQLYHEDLLAGLGDVALLPLEGP 480

Query: 481  DMTGFRLCGAQASCQAAEEFLRSLLGSISCHVLCLEHPGSARFLLGPEGQHLLQGLEAQF 540
            DMTGFRLCGAQASCQAAEEFLRSLLGSISCHVLCLEHPGSARFLLGPEGQHLLQGLEAQF
Sbjct: 481  DMTGFRLCGAQASCQAAEEFLRSLLGSISCHVLCLEHPGSARFLLGPEGQHLLQGLEAQF 540

Query: 541  QCVFGTERLATATLDTGLEEVDPTEALPVLPGNAHTLWTPDSTGGDQEDVSLEEVRELLA 600
            QCVFGTERLATATLDTGLEEVDPTEALPVLPGNAHTLWTPDSTGGDQEDVSLEEVRELLA
Sbjct: 541  QCVFGTERLATATLDTGLEEVDPTEALPVLPGNAHTLWTPDSTGGDQEDVSLEEVRELLA 600

Query: 601  TLEGLDLDGEDWLPRELEEEGPQEQPEEEVTPGHEEEEPVAPSTVAPRWLEEEAALQLAL 660
            TLEGLDLDGEDWLPRELEEEGPQEQPEEEVTPGHEEEEPVAPSTVAPRWLEEEAALQLAL
Sbjct: 601  TLEGLDLDGEDWLPRELEEEGPQEQPEEEVTPGHEEEEPVAPSTVAPRWLEEEAALQLAL 660

Query: 661  HRSLEPQGQVAEQEEAAALRQALTLSLLEQPPLEAEEPPDGGTDGKAQLVVHSAFEQDVE 720
            HRSLEPQGQVAEQEEAAALRQALTLSLLEQPPLEAEEPPDGGTDGKAQLVVHSAFEQDVE
Sbjct: 661  HRSLEPQGQVAEQEEAAALRQALTLSLLEQPPLEAEEPPDGGTDGKAQLVVHSAFEQDVE 720

Query: 721  ELDRALRAALEVHVQEETVGPWRRTLPAELRARLERCHGVSVALRGDCTILRGFGAHPAR 780
            ELDRALRAALEVHVQEETVGPWRRTLPAELRARLERCHGVSVALRGDCTILRGFGAHPAR
Sbjct: 721  ELDRALRAALEVHVQEETVGPWRRTLPAELRARLERCHGVSVALRGDCTILRGFGAHPAR 780

Query: 781  AARHLVALLAGPWDQSLAFPLAASGPTLAGQTLKGPWNNLERLAENTGEFQEVVRAFYDT 840
            AARHLVALLAGPWDQSLAFPLAASGPTLAGQTLKGPWNNLERLAENTGEFQEVVRAFYDT
Sbjct: 781  AARHLVALLAGPWDQSLAFPLAASGPTLAGQTLKGPWNNLERLAENTGEFQEVVRAFYDT 840

Query: 841  LDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAH 900
            LDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAH
Sbjct: 841  LDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAH 900

Query: 901  GFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGL 960
            GFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGL
Sbjct: 901  GFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGL 960

Query: 961  RAPPLRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSGLPG 1020
            RAPPLRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSGLPG
Sbjct: 961  RAPPLRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSGLPG 1020

Query: 1021 RSPDT 1025
            RSPDT
Sbjct: 1021 RSPDT 1025


>gi|22749259 poly (ADP-ribose) polymerase family, member 15 isoform 2
            [Homo sapiens]
          Length = 444

 Score =  134 bits (337), Expect = 4e-31
 Identities = 66/158 (41%), Positives = 100/158 (63%)

Query: 846  SSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRS 905
            SS  + ++ER+ +  L Q Y++ + ++  + + +  E++L+HGT A +VP +  HGFNRS
Sbjct: 284  SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADSVPYVNQHGFNRS 343

Query: 906  FCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPL 965
              G+NA  YGKG YFA  AS S +D YS P+++G K ++V RVLTG + +GR GL  PP 
Sbjct: 344  CAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPP 403

Query: 966  RGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLIT 1003
            + P +    +DS  +    P +FV+F D QA P +LIT
Sbjct: 404  KNPHNPTDLFDSVTNNTRSPKLFVVFFDNQAYPEYLIT 441


>gi|165377137 poly (ADP-ribose) polymerase family, member 15 isoform 1
            [Homo sapiens]
          Length = 678

 Score =  134 bits (337), Expect = 4e-31
 Identities = 66/158 (41%), Positives = 100/158 (63%)

Query: 846  SSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRS 905
            SS  + ++ER+ +  L Q Y++ + ++  + + +  E++L+HGT A +VP +  HGFNRS
Sbjct: 518  SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADSVPYVNQHGFNRS 577

Query: 906  FCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPL 965
              G+NA  YGKG YFA  AS S +D YS P+++G K ++V RVLTG + +GR GL  PP 
Sbjct: 578  CAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPP 637

Query: 966  RGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLIT 1003
            + P +    +DS  +    P +FV+F D QA P +LIT
Sbjct: 638  KNPHNPTDLFDSVTNNTRSPKLFVVFFDNQAYPEYLIT 675


>gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Homo
            sapiens]
          Length = 1801

 Score =  133 bits (334), Expect = 1e-30
 Identities = 70/175 (40%), Positives = 100/175 (57%), Gaps = 4/175 (2%)

Query: 829  EFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHG 888
            E+  V   F  T     S  R+ ++ER+ +P L   Y+  ++ +  +  +   E+ L+HG
Sbjct: 1628 EYNTVASKFNQTC----SHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHG 1683

Query: 889  TTAPAVPDICAHGFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARV 948
            T A +VP +  +GFNRS+ G+NA  YGKG YFA  A+ S  D YS P+A+G K V+  RV
Sbjct: 1684 TDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRV 1743

Query: 949  LTGDYGQGRRGLRAPPLRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLIT 1003
            LTG Y  G   L  PP + P +    YD+  D +  PS+FV F+D QA P +LIT
Sbjct: 1744 LTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYDYQAYPEYLIT 1798


>gi|38524594 TCDD-inducible poly(ADP-ribose) polymerase [Homo sapiens]
          Length = 657

 Score =  111 bits (278), Expect = 3e-24
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 6/163 (3%)

Query: 849  RVVRVERVSHPLLQQQYELYRERLLQRC---ERRPVEQVLYHGTTAPAVPDICAHGFNRS 905
            R++++ RV +  L ++Y+  +E + ++    +R   E+ L+HGT+   V  IC H F+  
Sbjct: 491  RILQILRVQNQFLWEKYKRKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGICKHNFDPR 550

Query: 906  FCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPL 965
             CG++AT++G+G YFA++AS S    +S  ++ G   +F+A+VLTG Y  G  G+R PP 
Sbjct: 551  VCGKHATMFGQGSYFAKKASYS--HNFSKKSSKGVHFMFLAKVLTGRYTMGSHGMRRPPP 608

Query: 966  RGPGHVLL-RYDSAVDCICQPSIFVIFHDTQALPTHLITCEHV 1007
              PG V    YDS VD   +P IFVIF+D Q+ P  +I  E V
Sbjct: 609  VNPGSVTSDLYDSCVDNFFEPQIFVIFNDDQSYPYFVIQYEEV 651


>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
          Length = 701

 Score = 93.2 bits (230), Expect = 1e-18
 Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 11/193 (5%)

Query: 823  LAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPV- 881
            L+ ++ E+Q+V   F  TL        V ++ERV +  L + Y+  + ++ ++   + V 
Sbjct: 503  LSSSSEEYQKVWNLFNRTLPF----YFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVD 558

Query: 882  EQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHK 941
            E+ L+HGT+A  V  IC   F+   CG + T YGKG YFAR A+ S    YS  +   H 
Sbjct: 559  ERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYS--HHYSKSDTQTH- 615

Query: 942  AVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHL 1001
             +F+ARVL G++ +G      PP +  G     YDS V+ +  PSIFVIF   Q  P ++
Sbjct: 616  TMFLARVLVGEFVRGNASFVRPPAK-EGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674

Query: 1002 I--TCEHVPRASP 1012
            I  T    P  +P
Sbjct: 675  IQYTTSSKPSVTP 687


>gi|194328777 poly (ADP-ribose) polymerase family, member 11 [Homo
            sapiens]
          Length = 338

 Score = 89.4 bits (220), Expect = 2e-17
 Identities = 68/204 (33%), Positives = 99/204 (48%), Gaps = 35/204 (17%)

Query: 823  LAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPV- 881
            L   T E+ EV   F  T+D  R    + R++R+ +  L   +E +  +  Q  ++R V 
Sbjct: 143  LHNQTHEYNEVANLFGKTMDRNR----IKRIQRIQNLDL---WEFFCRKKAQLKKKRGVP 195

Query: 882  ---EQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFARRAS------------- 925
               EQ+L+HGT++  V  IC H F+    G +  V+GKG YFAR A+             
Sbjct: 196  QINEQMLFHGTSSEFVEAICIHNFDWRINGIHGAVFGKGTYFARDAAYSSRFCKDDIKHG 255

Query: 926  -------LSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSA 978
                   +S+Q R+       +K++F+ARVL GDY  G      PP +   +V L YDS 
Sbjct: 256  NTFQIHGVSLQQRHL---FRTYKSMFLARVLIGDYINGDSKYMRPPSKDGSYVNL-YDSC 311

Query: 979  VDCICQPSIFVIFHDTQALPTHLI 1002
            VD    P IFV+F   Q  P +LI
Sbjct: 312  VDDTWNPKIFVVFDANQIYPEYLI 335


>gi|226371716 poly (ADP-ribose) polymerase family, member 9 isoform b
            [Homo sapiens]
          Length = 819

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 845  RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNR 904
            +  ++V++VE++ + +L   ++  ++ + ++  R+PV   L+          +C  GF R
Sbjct: 628  KCGLQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHRLFQQVPYQFCNVVCRVGFQR 687

Query: 905  SFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPP 964
             +       YG G+YF +      +       AD    VF A VLTG + QG      PP
Sbjct: 688  MYSTPCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIYVFEAEVLTGFFCQGHPLNIVPP 747

Query: 965  LRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSG 1017
               PG  +  +DS VD +  P  FVIF   QA+P +L TC      S D  SG
Sbjct: 748  PLSPG-AIDGHDSVVDNVSSPETFVIFSGMQAIPQYLWTCTQEYVQSQDYSSG 799


>gi|226371714 poly (ADP-ribose) polymerase family, member 9 isoform b
            [Homo sapiens]
          Length = 819

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 845  RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNR 904
            +  ++V++VE++ + +L   ++  ++ + ++  R+PV   L+          +C  GF R
Sbjct: 628  KCGLQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHRLFQQVPYQFCNVVCRVGFQR 687

Query: 905  SFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPP 964
             +       YG G+YF +      +       AD    VF A VLTG + QG      PP
Sbjct: 688  MYSTPCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIYVFEAEVLTGFFCQGHPLNIVPP 747

Query: 965  LRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSG 1017
               PG  +  +DS VD +  P  FVIF   QA+P +L TC      S D  SG
Sbjct: 748  PLSPG-AIDGHDSVVDNVSSPETFVIFSGMQAIPQYLWTCTQEYVQSQDYSSG 799


>gi|226371712 poly (ADP-ribose) polymerase family, member 9 isoform b
            [Homo sapiens]
          Length = 819

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 845  RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNR 904
            +  ++V++VE++ + +L   ++  ++ + ++  R+PV   L+          +C  GF R
Sbjct: 628  KCGLQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHRLFQQVPYQFCNVVCRVGFQR 687

Query: 905  SFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPP 964
             +       YG G+YF +      +       AD    VF A VLTG + QG      PP
Sbjct: 688  MYSTPCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIYVFEAEVLTGFFCQGHPLNIVPP 747

Query: 965  LRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSG 1017
               PG  +  +DS VD +  P  FVIF   QA+P +L TC      S D  SG
Sbjct: 748  PLSPG-AIDGHDSVVDNVSSPETFVIFSGMQAIPQYLWTCTQEYVQSQDYSSG 799


>gi|226371710 poly (ADP-ribose) polymerase family, member 9 isoform a
            [Homo sapiens]
          Length = 854

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 845  RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNR 904
            +  ++V++VE++ + +L   ++  ++ + ++  R+PV   L+          +C  GF R
Sbjct: 663  KCGLQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHRLFQQVPYQFCNVVCRVGFQR 722

Query: 905  SFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPP 964
             +       YG G+YF +      +       AD    VF A VLTG + QG      PP
Sbjct: 723  MYSTPCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIYVFEAEVLTGFFCQGHPLNIVPP 782

Query: 965  LRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSG 1017
               PG  +  +DS VD +  P  FVIF   QA+P +L TC      S D  SG
Sbjct: 783  PLSPG-AIDGHDSVVDNVSSPETFVIFSGMQAIPQYLWTCTQEYVQSQDYSSG 834


>gi|226371706 poly (ADP-ribose) polymerase family, member 9 isoform a
            [Homo sapiens]
          Length = 854

 Score = 78.6 bits (192), Expect = 3e-14
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 1/173 (0%)

Query: 845  RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNR 904
            +  ++V++VE++ + +L   ++  ++ + ++  R+PV   L+          +C  GF R
Sbjct: 663  KCGLQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHRLFQQVPYQFCNVVCRVGFQR 722

Query: 905  SFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPP 964
             +       YG G+YF +      +       AD    VF A VLTG + QG      PP
Sbjct: 723  MYSTPCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIYVFEAEVLTGFFCQGHPLNIVPP 782

Query: 965  LRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLITCEHVPRASPDDPSG 1017
               PG  +  +DS VD +  P  FVIF   QA+P +L TC      S D  SG
Sbjct: 783  PLSPG-AIDGHDSVVDNVSSPETFVIFSGMQAIPQYLWTCTQEYVQSQDYSSG 834


>gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens]
          Length = 902

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 14/158 (8%)

Query: 845  RSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNR 904
            ++S++  ++E++      +  EL  +   ++ + +   ++L++ T+   V  IC++ F+ 
Sbjct: 748  KASMKNFKIEKIKKI---ENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESICSNNFDS 804

Query: 905  SFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPP 964
                 +   YGKG+YFA+ A   +    + P    +  +FVA+VL G + +G     +PP
Sbjct: 805  FLHETHENKYGKGIYFAKDA---IYSHKNCPYDAKNVVMFVAQVLVGKFTEGNITYTSPP 861

Query: 965  LRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHLI 1002
                     ++DS VD    PS+FVIF   Q  P ++I
Sbjct: 862  --------PQFDSCVDTRSNPSVFVIFQKDQVYPQYVI 891


>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
          Length = 1125

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 300 EPGQSGASLRTGPMVQG-RGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLE 358
           EPGQ G     G  V G RG+   G     G+ G+   TGP G  G + +     +G + 
Sbjct: 384 EPGQPGPRGPEG--VPGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVG 441

Query: 359 HEGLVSLRPVGLQEQEGPMSLGPVGSAGPV-ETSKGLLGQEGLVEIAMDSPEQEGLVGPM 417
            +G + +  +G Q ++G    GP+G  GP     +GL G +G  E+    P   G  GP+
Sbjct: 442 PQGPMGIPGIGSQGEQGIQ--GPIGPPGPQGPAGQGLPGSKG--EVGQMGP--TGPRGPV 495

Query: 418 EITMGSLEKAGPV-SPGCVKLAGQEGL 443
            I +      GP   PG + L GQ G+
Sbjct: 496 GIGV-----QGPKGEPGSIGLPGQPGV 517



 Score = 38.9 bits (89), Expect = 0.025
 Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 11/126 (8%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG  G     GPM   RG+  TG+  EPG  G    +GP G   Q  +  +   G     
Sbjct: 643 PGPRGLPGPPGPMGL-RGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPP 701

Query: 361 GLVSLRPVGLQEQEGPMSL-GPVGSAG-PVETSKGLLGQEGLVEIAMD--------SPEQ 410
           G       G++ ++GP    GP G+ G  +   KG  G+ G V    D        SP +
Sbjct: 702 GPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGK 761

Query: 411 EGLVGP 416
           +GL GP
Sbjct: 762 QGLQGP 767


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 54/169 (31%), Positives = 68/169 (40%), Gaps = 36/169 (21%)

Query: 295 MGSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPM 354
           +G   EPG+ G     GP  QG G    G    PG +G   R GP G  G+A        
Sbjct: 336 LGDRGEPGEDGEPGEQGP--QGLG----GPPGLPGSAGLPGRRGPPGPKGEA-------- 381

Query: 355 GSLEHEGLVSLR----PVGLQEQEG-------PMSLGPVGSAGPVETSKGLLGQEGLVEI 403
           G     G+  +R    P GL  + G       P + GP G  GP +   G  G+ G   +
Sbjct: 382 GPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGP-KGEPGFTGRPGGPGV 440

Query: 404 A--------MDSPEQEGLVGPMEITMGSLEKAGPVSP-GCVKLAGQEGL 443
           A        +  P Q GL GP  I  G    AGP+ P G   L G+ GL
Sbjct: 441 AGALGQKGDLGLPGQPGLRGPSGIP-GLQGPAGPIGPQGLPGLKGEPGL 488


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG-QAEQVSSMPM 354
           GS   PG  GA    GP+       + G    PG+ G     G  G+ G Q  +    P+
Sbjct: 531 GSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPL 590

Query: 355 GSLEHEGLVSLRP-----VGLQEQEGPMSL-GPVGSAG----PVET-SKGLLGQEGLVEI 403
           G+   +G    RP     +G++ Q G M L GP GS+G    P E  + G+ GQ G    
Sbjct: 591 GAPGEDG----RPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRG---- 642

Query: 404 AMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
              +P ++G VGP          +GPV P    LAG+ G
Sbjct: 643 ---APGKDGEVGP----------SGPVGP--PGLAGERG 666



 Score = 42.0 bits (97), Expect = 0.003
 Identities = 48/152 (31%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQ--VSSMP 353
           G   EPG +G     G M  G G    G    PG SGT   TGP G  G   +  ++  P
Sbjct: 717 GERGEPGITGLPGEKG-MAGGHG--PDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTP 773

Query: 354 MGSLEHEGLVSLRPVGLQEQEGPMSL-GPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEG 412
               +  G+      G    +G   L GP+G  GP     G  G++G        P   G
Sbjct: 774 GPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPA----GPTGEKG-------EPGPRG 822

Query: 413 LVGP--MEITMGSLEKAGPVSPGCVKLAGQEG 442
           LVGP       GS  + GP   G V  AG +G
Sbjct: 823 LVGPPGSRGNPGSRGENGPT--GAVGFAGPQG 852



 Score = 39.7 bits (91), Expect = 0.015
 Identities = 49/156 (31%), Positives = 60/156 (38%), Gaps = 25/156 (16%)

Query: 283 LVTALQGAGTVTMGSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGS 342
           +VT ++G      G    PG  G     GP  +       G   EPG  G     GP G 
Sbjct: 123 VVTGIRGRP----GPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGH 178

Query: 343 L------GQAEQVSSMPMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLG 396
                  G +   S+   G  E  GL S   VGL     P S+GPVG  GP    +GL G
Sbjct: 179 PSHPGPDGLSRPFSAQMAGLDEKSGLGS--QVGLM----PGSVGPVGPRGP----QGLQG 228

Query: 397 QEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSP 432
           Q+G        P + G  GP    MG +   GP  P
Sbjct: 229 QQGGAG-PTGPPGEPGDPGP----MGPIGSRGPEGP 259



 Score = 38.9 bits (89), Expect = 0.025
 Identities = 45/156 (28%), Positives = 58/156 (37%), Gaps = 31/156 (19%)

Query: 300  EPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEH 359
            +PG  G     GP     G    G   E GQ G     GP G+ GQ   +  MP G    
Sbjct: 946  DPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQ-RGIVGMP-GQRGE 1003

Query: 360  EGLVSL----------RPVGLQEQEGPMS-LGPVGSAGPV--ETSKGLLGQEGLVEIAMD 406
             G+  L           P G    +GP   +GP GS GPV     +G  G +G       
Sbjct: 1004 RGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDG------- 1056

Query: 407  SPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
            +P ++G VG         E+     PG   L G +G
Sbjct: 1057 TPGRDGAVG---------ERGDRGDPGPAGLPGSQG 1083



 Score = 35.0 bits (79), Expect = 0.36
 Identities = 42/146 (28%), Positives = 56/146 (38%), Gaps = 30/146 (20%)

Query: 294 TMGSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQ-------A 346
           T G+    G +G+   +GP          GS   PG  G    TGP G  GQ        
Sbjct: 424 TDGTPGAKGPTGSPGTSGP---------PGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPG 474

Query: 347 EQVSSMPMGSLEHEGLVS-LRPVGLQEQEGPM-SLGPVGSAGPVETSKGLLGQEGLVEIA 404
            +  + P G     G+   + P G + + GP    G VG  GPV   +G  G  G     
Sbjct: 475 FKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPV-GERGAPGNRGF---- 529

Query: 405 MDSPEQEGLVGPMEITMGSLEKAGPV 430
              P  +GL GP     G+  + GPV
Sbjct: 530 ---PGSDGLPGP----KGAQGERGPV 548



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 34/162 (20%)

Query: 301 PGQSGASLRTGPMVQGRGIM-TTGSGQEPGQSGTSLRTGPMGSLGQ----AEQVSSMPMG 355
           PG  G +  TGPM    G M   G    PG+ G   R GP G+ GQ           PMG
Sbjct: 317 PGSKGEAGPTGPM----GAMGPLGPRGMPGERG---RLGPQGAPGQRGAHGMPGKPGPMG 369

Query: 356 SLEHEGLVSL----------RPVGLQEQEGPM-SLGPVGSAGPVETS--KGLLGQEGLVE 402
            L   G               P G +  EGP    G  G  GPV +    G +G +G   
Sbjct: 370 PLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDG--- 426

Query: 403 IAMDSPEQEGLVGPMEITMGSLEKAGPV-SPGCVKLAGQEGL 443
               +P  +G  G    T G    AGP  SPG     G +G+
Sbjct: 427 ----TPGAKGPTGSPG-TSGPPGSAGPPGSPGPQGSTGPQGI 463



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQA----EQVSSMPMGS 356
           PG+ G +   GP     GI   G+    G  G     GP+G  G A    E+    P G 
Sbjct: 764 PGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGL 823

Query: 357 LEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP--------VETSKGLLGQEGLVEIAMDSP 408
           +   G  S    G + + GP   G VG AGP        V+   G  GQ+G       SP
Sbjct: 824 VGPPG--SRGNPGSRGENGP--TGAVGFAGPQGPDGQPGVKGEPGEPGQKG----DAGSP 875

Query: 409 EQEGLVG 415
             +GL G
Sbjct: 876 GPQGLAG 882



 Score = 32.0 bits (71), Expect = 3.1
 Identities = 40/149 (26%), Positives = 52/149 (34%), Gaps = 28/149 (18%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQA-EQVSSMPM 354
           GS   PG  G+S   G   +       G    PG+ G    +GP+G  G A E+    P 
Sbjct: 612 GSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPP 671

Query: 355 GSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLV 414
           G           P G Q   GP   GP G  G         G +G+       P   G V
Sbjct: 672 G-----------PTGFQGLPGPP--GPPGEGGKP-------GDQGV-------PGDPGAV 704

Query: 415 GPMEITMGSLEKAGPVSPGCVKLAGQEGL 443
           GP+              PG   L G++G+
Sbjct: 705 GPLGPRGERGNPGERGEPGITGLPGEKGM 733


>gi|62510076 hypothetical protein LOC90835 [Homo sapiens]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 612 WLPRELEEEGPQEQPEEEVTPGHEEEEPVAPSTVAPRWLEE-EAALQLALHRSLEP-QGQ 669
           W   E EEE  +E  E+ VTP  EE E VAP    P  +    A ++  +++ LE  QG 
Sbjct: 200 WPESETEEEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGL 259

Query: 670 VAEQEEAAALRQALTLSLLEQP 691
           V E+ +A+  R +  L+ LE+P
Sbjct: 260 VEERLKASEERLSSKLTALERP 281


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 22/143 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG+ G    TG   QG      G   E G+ G     GP G  G+     S P G L  +
Sbjct: 481 PGEKGHRGDTG--AQG----LPGPPGEDGERGDDGEIGPRGLPGE-----SGPRGLLGPK 529

Query: 361 GLVSLR-PVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEI 419
           G   +  P G++  +GP   GP GS GP +   G  GQ+G       +P  +GL GP   
Sbjct: 530 GPPGIPGPPGVRGMDGPQ--GPKGSLGP-QGEPGPPGQQG-------TPGTQGLPGPQGA 579

Query: 420 TMGSLEKAGPVSPGCVKLAGQEG 442
                EK     PG   + G +G
Sbjct: 580 IGPHGEKGPQGKPGLPGMPGSDG 602



 Score = 38.5 bits (88), Expect = 0.033
 Identities = 48/148 (32%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRT---GPMGSLGQAEQVSSMPMGSL 357
            PG  G     GP  Q       G   EPGQ G+   T   GP G LG+       P GS 
Sbjct: 1186 PGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG-----PAGSP 1240

Query: 358  EHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETS--KGLLGQEGLVEIAMDSPEQEGLVG 415
              EG    R  G   +  P ++G  G  GPV  +   G  G +GL  +   S  Q+G  G
Sbjct: 1241 GSEG----RQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLP-GSVGQQGRPG 1295

Query: 416  PMEITMGSLEKAGPVS-PGCVKLAGQEG 442
                  G     GPV  PG   L G  G
Sbjct: 1296 ----ATGQAGPPGPVGPPGLPGLRGDAG 1319



 Score = 36.6 bits (83), Expect = 0.12
 Identities = 49/155 (31%), Positives = 55/155 (35%), Gaps = 18/155 (11%)

Query: 296 GSGEEPGQSGASLRTGPMVQGR--GIM-TTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM 352
           GS  E G  G   RTGP       G+M   G    PG  G   R GP GSLG        
Sbjct: 677 GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG----FPGF 732

Query: 353 PMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP-----VETSKGLLGQEGLVEIAMDS 407
           P  S E          G + + GP   GP G  GP        +KG  G +G        
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGP--TGPRGQRGPRGATGKSGAKGTSGGDG----PHGP 786

Query: 408 PEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
           P + GL GP         K  P  PG   L G  G
Sbjct: 787 PGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPG 821



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 50/174 (28%)

Query: 302 GQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEG 361
           G  GA+  TGPM +       G   E G  GT+ + G  G  G        P G+   +G
Sbjct: 842 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG--------PPGAPGKDG 893

Query: 362 LVSLRPV-------------GLQEQEGPM----------SLGPVGSAGPV--------ET 390
              LR               GL+  EGP             G  GS GP+        + 
Sbjct: 894 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 953

Query: 391 SKGLLGQEGLVEIAMDSPEQEGLVGP--MEITMGSLEKAGPVSPGCVKLAGQEG 442
             G  G++G+       P ++G +GP   +   G +   GP  P  V  AG++G
Sbjct: 954 PPGAAGEKGV-------PGEKGPIGPTGRDGVQGPVGLPGPAGPPGV--AGEDG 998



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 54/201 (26%), Positives = 69/201 (34%), Gaps = 39/201 (19%)

Query: 251  EPEELAENTSGG--DHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASL 308
            E  E  E+ S G    P  +GPR  +     +G              G    PG  G + 
Sbjct: 1125 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESG------------QPGEPGPPGPKGPTG 1172

Query: 309  RTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPV 368
              GP      +   G    PG+ G   + G  G  G+         G     G  S  P 
Sbjct: 1173 DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED--------GEPGQPG--SPGPT 1222

Query: 369  GLQEQEGPM-SLGPVGSAGPV--ETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLE 425
            G     GP+   GP GS G    +  KG  G  G    A+ +P + G VGP     G   
Sbjct: 1223 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPG----AIGAPGKTGPVGP----AGPAG 1274

Query: 426  KAGPVS----PGCVKLAGQEG 442
            K GP      PG V   G+ G
Sbjct: 1275 KPGPDGLRGLPGSVGQQGRPG 1295



 Score = 31.2 bits (69), Expect = 5.2
 Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 40/145 (27%)

Query: 588 EDVSLEEVRELLATLEGLDLDGEDWLPRELEEEG-----------------PQEQPEEEV 630
           E+V   +V+EL A + G+    E    +ELE EG                 PQ+QP    
Sbjct: 198 EEVFEGDVQEL-AIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQPSRLH 256

Query: 631 TPGHEEEEPVAPSTVAPRWLEEEAALQLALHRSLE-----PQGQVAEQEEAAALRQALTL 685
            P ++E     P +  P   EEE  L+ +L   LE     P+G   E+ E A L   +  
Sbjct: 257 RPQNQE-----PQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGEKGEPAVLEPGM-- 309

Query: 686 SLLEQPPLEAEEPPDGGTDGKAQLV 710
            L+E PP         G +G A L+
Sbjct: 310 -LVEGPP---------GPEGPAGLI 324



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 27/121 (22%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQS---GTSLRTGPMGSLGQAEQV-------- 349
           PG  G     GP      +   G    PGQ    GT    GP G++G   +         
Sbjct: 535 PGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 594

Query: 350 -----SSMPMGSLEHEGLVSLRPVGLQEQEGPMS-LGPVGSAGP-----VETSKGLLGQE 398
                S  P G    EG     P G +  +GP    GP+G  GP     V+  +GL G +
Sbjct: 595 PGMPGSDGPPGHPGKEG-----PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHK 649

Query: 399 G 399
           G
Sbjct: 650 G 650



 Score = 30.4 bits (67), Expect = 8.9
 Identities = 41/140 (29%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM-PM 354
            G+  EPG  G     G         T G    PG  G     GP G  G+   V  M P 
Sbjct: 1037 GADGEPGARGPQGHFGAKGDEG---TRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPP 1093

Query: 355  GSLEHEGLVSLRPVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGL 413
            G     G     P G    +GP    G VG+ GP    KG  G+ G   I      + G+
Sbjct: 1094 GPPGPRG-----PAGPNGADGPQGPPGGVGNLGP-PGEKGEPGESGSPGI----QGEPGV 1143

Query: 414  VGPMEITMGSLEKAGPVSPG 433
             GP        E   P  PG
Sbjct: 1144 KGPRGERGEKGESGQPGEPG 1163


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 22/143 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG+ G    TG   QG      G   E G+ G     GP G  G+     S P G L  +
Sbjct: 460 PGEKGHRGDTG--AQG----LPGPPGEDGERGDDGEIGPRGLPGE-----SGPRGLLGPK 508

Query: 361 GLVSLR-PVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEI 419
           G   +  P G++  +GP   GP GS GP +   G  GQ+G       +P  +GL GP   
Sbjct: 509 GPPGIPGPPGVRGMDGPQ--GPKGSLGP-QGEPGPPGQQG-------TPGTQGLPGPQGA 558

Query: 420 TMGSLEKAGPVSPGCVKLAGQEG 442
                EK     PG   + G +G
Sbjct: 559 IGPHGEKGPQGKPGLPGMPGSDG 581



 Score = 38.5 bits (88), Expect = 0.033
 Identities = 48/148 (32%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRT---GPMGSLGQAEQVSSMPMGSL 357
            PG  G     GP  Q       G   EPGQ G+   T   GP G LG+       P GS 
Sbjct: 1165 PGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG-----PAGSP 1219

Query: 358  EHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETS--KGLLGQEGLVEIAMDSPEQEGLVG 415
              EG    R  G   +  P ++G  G  GPV  +   G  G +GL  +   S  Q+G  G
Sbjct: 1220 GSEG----RQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLP-GSVGQQGRPG 1274

Query: 416  PMEITMGSLEKAGPVS-PGCVKLAGQEG 442
                  G     GPV  PG   L G  G
Sbjct: 1275 ----ATGQAGPPGPVGPPGLPGLRGDAG 1298



 Score = 36.6 bits (83), Expect = 0.12
 Identities = 49/155 (31%), Positives = 55/155 (35%), Gaps = 18/155 (11%)

Query: 296 GSGEEPGQSGASLRTGPMVQGR--GIM-TTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM 352
           GS  E G  G   RTGP       G+M   G    PG  G   R GP GSLG        
Sbjct: 656 GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG----FPGF 711

Query: 353 PMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP-----VETSKGLLGQEGLVEIAMDS 407
           P  S E          G + + GP   GP G  GP        +KG  G +G        
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGP--TGPRGQRGPRGATGKSGAKGTSGGDG----PHGP 765

Query: 408 PEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
           P + GL GP         K  P  PG   L G  G
Sbjct: 766 PGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPG 800



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 50/174 (28%)

Query: 302 GQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEG 361
           G  GA+  TGPM +       G   E G  GT+ + G  G  G        P G+   +G
Sbjct: 821 GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG--------PPGAPGKDG 872

Query: 362 LVSLRPV-------------GLQEQEGPM----------SLGPVGSAGPV--------ET 390
              LR               GL+  EGP             G  GS GP+        + 
Sbjct: 873 PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 932

Query: 391 SKGLLGQEGLVEIAMDSPEQEGLVGP--MEITMGSLEKAGPVSPGCVKLAGQEG 442
             G  G++G+       P ++G +GP   +   G +   GP  P  V  AG++G
Sbjct: 933 PPGAAGEKGV-------PGEKGPIGPTGRDGVQGPVGLPGPAGPPGV--AGEDG 977



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 54/201 (26%), Positives = 69/201 (34%), Gaps = 39/201 (19%)

Query: 251  EPEELAENTSGG--DHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASL 308
            E  E  E+ S G    P  +GPR  +     +G              G    PG  G + 
Sbjct: 1104 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESG------------QPGEPGPPGPKGPTG 1151

Query: 309  RTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPV 368
              GP      +   G    PG+ G   + G  G  G+         G     G  S  P 
Sbjct: 1152 DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED--------GEPGQPG--SPGPT 1201

Query: 369  GLQEQEGPM-SLGPVGSAGPV--ETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLE 425
            G     GP+   GP GS G    +  KG  G  G    A+ +P + G VGP     G   
Sbjct: 1202 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPG----AIGAPGKTGPVGP----AGPAG 1253

Query: 426  KAGPVS----PGCVKLAGQEG 442
            K GP      PG V   G+ G
Sbjct: 1254 KPGPDGLRGLPGSVGQQGRPG 1274



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 27/121 (22%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQS---GTSLRTGPMGSLGQAEQV-------- 349
           PG  G     GP      +   G    PGQ    GT    GP G++G   +         
Sbjct: 514 PGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 573

Query: 350 -----SSMPMGSLEHEGLVSLRPVGLQEQEGPMS-LGPVGSAGP-----VETSKGLLGQE 398
                S  P G    EG     P G +  +GP    GP+G  GP     V+  +GL G +
Sbjct: 574 PGMPGSDGPPGHPGKEG-----PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHK 628

Query: 399 G 399
           G
Sbjct: 629 G 629



 Score = 30.4 bits (67), Expect = 8.9
 Identities = 41/140 (29%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM-PM 354
            G+  EPG  G     G         T G    PG  G     GP G  G+   V  M P 
Sbjct: 1016 GADGEPGARGPQGHFGAKGDEG---TRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPP 1072

Query: 355  GSLEHEGLVSLRPVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGL 413
            G     G     P G    +GP    G VG+ GP    KG  G+ G   I      + G+
Sbjct: 1073 GPPGPRG-----PAGPNGADGPQGPPGGVGNLGP-PGEKGEPGESGSPGI----QGEPGV 1122

Query: 414  VGPMEITMGSLEKAGPVSPG 433
             GP        E   P  PG
Sbjct: 1123 KGPRGERGEKGESGQPGEPG 1142


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 45/143 (31%), Positives = 59/143 (41%), Gaps = 22/143 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG+ G    TG   QG      G   E G+ G     GP G  G+     S P G L  +
Sbjct: 567 PGEKGHRGDTG--AQG----LPGPPGEDGERGDDGEIGPRGLPGE-----SGPRGLLGPK 615

Query: 361 GLVSLR-PVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEI 419
           G   +  P G++  +GP   GP GS GP +   G  GQ+G       +P  +GL GP   
Sbjct: 616 GPPGIPGPPGVRGMDGPQ--GPKGSLGP-QGEPGPPGQQG-------TPGTQGLPGPQGA 665

Query: 420 TMGSLEKAGPVSPGCVKLAGQEG 442
                EK     PG   + G +G
Sbjct: 666 IGPHGEKGPQGKPGLPGMPGSDG 688



 Score = 38.5 bits (88), Expect = 0.033
 Identities = 48/148 (32%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRT---GPMGSLGQAEQVSSMPMGSL 357
            PG  G     GP  Q       G   EPGQ G+   T   GP G LG+       P GS 
Sbjct: 1272 PGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG-----PAGSP 1326

Query: 358  EHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETS--KGLLGQEGLVEIAMDSPEQEGLVG 415
              EG    R  G   +  P ++G  G  GPV  +   G  G +GL  +   S  Q+G  G
Sbjct: 1327 GSEG----RQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLP-GSVGQQGRPG 1381

Query: 416  PMEITMGSLEKAGPVS-PGCVKLAGQEG 442
                  G     GPV  PG   L G  G
Sbjct: 1382 ----ATGQAGPPGPVGPPGLPGLRGDAG 1405



 Score = 36.6 bits (83), Expect = 0.12
 Identities = 49/155 (31%), Positives = 55/155 (35%), Gaps = 18/155 (11%)

Query: 296 GSGEEPGQSGASLRTGPMVQGR--GIM-TTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM 352
           GS  E G  G   RTGP       G+M   G    PG  G   R GP GSLG        
Sbjct: 763 GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG----FPGF 818

Query: 353 PMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP-----VETSKGLLGQEGLVEIAMDS 407
           P  S E          G + + GP   GP G  GP        +KG  G +G        
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGP--TGPRGQRGPRGATGKSGAKGTSGGDG----PHGP 872

Query: 408 PEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
           P + GL GP         K  P  PG   L G  G
Sbjct: 873 PGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPG 907



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 50/174 (28%)

Query: 302  GQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEG 361
            G  GA+  TGPM +       G   E G  GT+ + G  G  G        P G+   +G
Sbjct: 928  GPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPG--------PPGAPGKDG 979

Query: 362  LVSLRPV-------------GLQEQEGPM----------SLGPVGSAGPV--------ET 390
               LR               GL+  EGP             G  GS GP+        + 
Sbjct: 980  PAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 1039

Query: 391  SKGLLGQEGLVEIAMDSPEQEGLVGP--MEITMGSLEKAGPVSPGCVKLAGQEG 442
              G  G++G+       P ++G +GP   +   G +   GP  P  V  AG++G
Sbjct: 1040 PPGAAGEKGV-------PGEKGPIGPTGRDGVQGPVGLPGPAGPPGV--AGEDG 1084



 Score = 34.3 bits (77), Expect = 0.62
 Identities = 54/201 (26%), Positives = 69/201 (34%), Gaps = 39/201 (19%)

Query: 251  EPEELAENTSGG--DHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASL 308
            E  E  E+ S G    P  +GPR  +     +G              G    PG  G + 
Sbjct: 1211 EKGEPGESGSPGIQGEPGVKGPRGERGEKGESG------------QPGEPGPPGPKGPTG 1258

Query: 309  RTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPV 368
              GP      +   G    PG+ G   + G  G  G+         G     G  S  P 
Sbjct: 1259 DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGED--------GEPGQPG--SPGPT 1308

Query: 369  GLQEQEGPM-SLGPVGSAGPV--ETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLE 425
            G     GP+   GP GS G    +  KG  G  G    A+ +P + G VGP     G   
Sbjct: 1309 GENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPG----AIGAPGKTGPVGP----AGPAG 1360

Query: 426  KAGPVS----PGCVKLAGQEG 442
            K GP      PG V   G+ G
Sbjct: 1361 KPGPDGLRGLPGSVGQQGRPG 1381



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 27/121 (22%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQS---GTSLRTGPMGSLGQAEQV-------- 349
           PG  G     GP      +   G    PGQ    GT    GP G++G   +         
Sbjct: 621 PGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL 680

Query: 350 -----SSMPMGSLEHEGLVSLRPVGLQEQEGPMS-LGPVGSAGP-----VETSKGLLGQE 398
                S  P G    EG     P G +  +GP    GP+G  GP     V+  +GL G +
Sbjct: 681 PGMPGSDGPPGHPGKEG-----PPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHK 735

Query: 399 G 399
           G
Sbjct: 736 G 736



 Score = 30.4 bits (67), Expect = 8.9
 Identities = 41/140 (29%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM-PM 354
            G+  EPG  G     G         T G    PG  G     GP G  G+   V  M P 
Sbjct: 1123 GADGEPGARGPQGHFGAKGDEG---TRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPP 1179

Query: 355  GSLEHEGLVSLRPVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGL 413
            G     G     P G    +GP    G VG+ GP    KG  G+ G   I      + G+
Sbjct: 1180 GPPGPRG-----PAGPNGADGPQGPPGGVGNLGP-PGEKGEPGESGSPGI----QGEPGV 1229

Query: 414  VGPMEITMGSLEKAGPVSPG 433
             GP        E   P  PG
Sbjct: 1230 KGPRGERGEKGESGQPGEPG 1249


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 43/132 (32%), Positives = 58/132 (43%), Gaps = 27/132 (20%)

Query: 296  GSGEEPGQSGASLRTGPMV----QGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSS 351
            G+  EPG  G   + GP      +GR     G+  EPG  G   RTGPMG+ G       
Sbjct: 1298 GASGEPGAPGPPGKRGPSGHMGREGRE-GEKGAKGEPGPDGPPGRTGPMGARG------- 1349

Query: 352  MPMGSLEHEGLVSL-RPVGLQEQEG-PMSLGPVGSAGP-----VETSKGLLGQEGLVEIA 404
             P G +  EGL  +  PVG     G P  +GP G  GP     ++   G  G++G + + 
Sbjct: 1350 -PPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLI 1408

Query: 405  MDSPEQEGLVGP 416
                   GL+GP
Sbjct: 1409 -------GLIGP 1413



 Score = 38.5 bits (88), Expect = 0.033
 Identities = 50/176 (28%), Positives = 65/176 (36%), Gaps = 42/176 (23%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
           GS  E GQ GA+ + GP      +   G+   PG+ G     GP G  G        P G
Sbjct: 836 GSRGERGQPGATGQPGPKGD---VGQDGAPGIPGEKGLPGLQGPPGFPG--------PKG 884

Query: 356 SLEHEGLVSLRP--------VGLQEQEGPMS-------------LGPVGSAGPV------ 388
              H+G    RP        +G Q Q GP               +GP+G  GP       
Sbjct: 885 PPGHQGKDG-RPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPP 943

Query: 389 --ETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
             +   GL G+EG  +  +  P   G  GP  +      K GP  PG   L G +G
Sbjct: 944 GEQGLPGLEGREG-AKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKG 998



 Score = 37.4 bits (85), Expect = 0.073
 Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 25/154 (16%)

Query: 302 GQSGASLRTG-PMVQG-RGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEH 359
           G+ G S +TG P ++G RG    GS  E GQ G + + GP G +GQ       P G    
Sbjct: 815 GEKGKSGKTGQPGLEGERG--PPGSRGERGQPGATGQPGPKGDVGQ----DGAP-GIPGE 867

Query: 360 EGLVSLR-PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPM 417
           +GL  L+ P G    +GP    G  G  G     +G LG +G        P   G++GP 
Sbjct: 868 KGLPGLQGPPGFPGPKGPPGHQGKDGRPGH-PGQRGELGFQG----QTGPPGPAGVLGPQ 922

Query: 418 EIT--MGSLEKAGPVSP-------GCVKLAGQEG 442
             T  +G L + GP  P       G   L G+EG
Sbjct: 923 GKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREG 956



 Score = 37.0 bits (84), Expect = 0.095
 Identities = 71/246 (28%), Positives = 94/246 (38%), Gaps = 39/246 (15%)

Query: 215 GTVASFQQWQVAERVLQQEH-RLQGSELSL----------VPHYDILEPEELAENTSGGD 263
           G   SFQQ Q A+ VLQQ    ++G    +          +P +  L+ EE AE   G  
Sbjct: 456 GPPVSFQQAQ-AQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPR 514

Query: 264 HPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGE--EPGQSGASLRTGPMVQGRGIMT 321
               QGP      + + G       GA  +   +G   + G  G     G   Q      
Sbjct: 515 --GLQGPHGPPGRVGKMGR--PGADGARGLPGDTGPKGDRGFDGLPGLPGEKGQRGDFGH 570

Query: 322 TGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSL--RP--VGLQEQEGPM 377
            G    PG+ G     GP G  GQA +    P G L   G      RP   G+    G  
Sbjct: 571 VGQPGPPGEDGERGAEGPPGPTGQAGEPG--PRGLLGPRGSPGPTGRPGVTGIDGAPGAK 628

Query: 378 -SLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVK 436
            ++GP G  GP    +G  G +GL       P  +GL+G    T G  EK  P +PG   
Sbjct: 629 GNVGPPGEPGP-PGQQGNHGSQGL-------PGPQGLIG----TPG--EKGPPGNPGIPG 674

Query: 437 LAGQEG 442
           L G +G
Sbjct: 675 LPGSDG 680



 Score = 35.4 bits (80), Expect = 0.28
 Identities = 54/189 (28%), Positives = 70/189 (37%), Gaps = 11/189 (5%)

Query: 264 HPSTQGPRATKHALLRTGGL-VTALQGAGTVTMGSGEE--PGQSGASLRTG-PMVQGRGI 319
           HP  +GP   K A    G        G   V   SG     G+ G     G P  +G  +
Sbjct: 684 HPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKG-DV 742

Query: 320 MTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM-PMGSLEHEGLVSLRPV-GLQEQEGPM 377
              G   +PG  G     GP G  GQA Q     P GS   +G + +  + G   + GP 
Sbjct: 743 GLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPK 802

Query: 378 -SLGPVGSAGPV--ETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSPGC 434
            S+G  G  GP+  +   G  GQ GL E     P   G  G    T     K      G 
Sbjct: 803 GSIGFPGPLGPIGEKGKSGKTGQPGL-EGERGPPGSRGERGQPGATGQPGPKGDVGQDGA 861

Query: 435 VKLAGQEGL 443
             + G++GL
Sbjct: 862 PGIPGEKGL 870



 Score = 33.1 bits (74), Expect = 1.4
 Identities = 60/246 (24%), Positives = 90/246 (36%), Gaps = 39/246 (15%)

Query: 203 PLEDLQRLPGPL---GTVASFQQWQVAERVLQQEHRLQGSELSLVPHYDILEPEELAENT 259
           P  +L   P PL    TV +     + ER L  +    G+EL  +      E EE  ++T
Sbjct: 294 PAPNLPPTPTPLVVTSTVTTGLNATILERSLDPD---SGTELGTLETKAAREDEEGDDST 350

Query: 260 SGGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGPMVQGRGI 319
            G D  + + P  T+  +           GAG        E G  G      P V  +G 
Sbjct: 351 MGPDFRAAEYPSRTQFQIF---------PGAG--------EKGAKGE-----PAVIEKGQ 388

Query: 320 MTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPVGLQEQEGPMSL 379
              G    PG  G    +GP G  G        P G     G+  +   G++   G + +
Sbjct: 389 QFEGPPGAPGPQGVVGPSGPPGPPGFPGDPG--PPGPAGLPGIPGID--GIRGPPGTVIM 444

Query: 380 GPVGSAGPVETSKGLLGQEGLVEIAMDSPE--QEGLVGPMEITMGSLEKAGPVS-PGCVK 436
            P   AG       +  Q+   +  +   +   +G  GP+ +T     + GPV  PG   
Sbjct: 445 MPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLT----GRPGPVGLPGHPG 500

Query: 437 LAGQEG 442
           L G+EG
Sbjct: 501 LKGEEG 506



 Score = 33.1 bits (74), Expect = 1.4
 Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 26/160 (16%)

Query: 295  MGSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPM 354
            +G+    G  G     GP  Q       G    PG  G   R GP G  GQ         
Sbjct: 1081 VGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQ--------K 1132

Query: 355  GSLEHEGLVS-LRPVGLQEQEGPM----------SLGPVGSAGPVETSKGLLGQEGLVEI 403
            G     G V  + P GLQ   GP           S+GP G+ GP    +G  G EG   +
Sbjct: 1133 GDDGVRGFVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGP-RGPQGPTGSEGTPGL 1191

Query: 404  AMDSPEQEGLVGPMEITMGSLEKAG-PVSPGCVKLAGQEG 442
                  Q G VG      G    AG P  PG   + G +G
Sbjct: 1192 P-GGVGQPGAVG----EKGERGDAGDPGPPGAPGIPGPKG 1226



 Score = 31.2 bits (69), Expect = 5.2
 Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG-------QAEQVSSMP 353
            PGQSG+    GP  + +G  + G    PG +G     GP+G LG         E+     
Sbjct: 1024 PGQSGSEGPVGPAGK-KG--SRGERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGD 1080

Query: 354  MGSLEHEGLVSLR----PVGLQEQEGPMS-LGPVGSAGPV--ETSKGLLGQEGLVEI--- 403
            +G+  H+G    +    P G     GP    GP G+ G        GL GQ+G   +   
Sbjct: 1081 VGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGF 1140

Query: 404  --AMDSPEQEGLVGP 416
               +  P  +GL GP
Sbjct: 1141 VGVIGPPGLQGLPGP 1155


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 63/205 (30%), Positives = 84/205 (40%), Gaps = 34/205 (16%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
            G   EPG  G     G       I  TG    PG+ G    TG +G  G  E+ S  P+G
Sbjct: 828  GYAGEPGPEGLKGEVGDQGNIGKIGETGPVGLPGEVG---MTGSIGEKG--ERGSPGPLG 882

Query: 356  SLEHEGLVSL-RPVGLQEQEGPMSL-------GPVGSAGP-----VETSKGLLGQEGLVE 402
                +G++    P G+    GP+ L       GP GS GP          GLLG++G ++
Sbjct: 883  PQGEKGVMGYPGPPGVPGPIGPLGLPGHVGARGPPGSQGPKGQRGSRGPDGLLGEQG-IQ 941

Query: 403  IAMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPGAMRFLQLYH 462
             A      +G  GP     G + K G  +PG     G+ GL  +     PG+     L  
Sbjct: 942  GAKGEKGDQGKRGP----HGLIGKTG--NPGERGFQGKPGLQGL-----PGSTGDRGLPG 990

Query: 463  EDLLAGL-GDV---ALLPLEGPDMT 483
            E  L GL GDV     + +EGP  T
Sbjct: 991  EPGLRGLQGDVGPPGEMGMEGPPGT 1015



 Score = 36.2 bits (82), Expect = 0.16
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 12/119 (10%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG  G   + GP      +   G    PG  GT    GP+G+ G+       P G    +
Sbjct: 773 PGDIGIPGQNGPEGPKGLLGNRGPPGPPGLKGTQGEEGPIGAFGELG-----PRGKPGQK 827

Query: 361 GLV-SLRPVGLQEQEGPM-SLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPM 417
           G      P GL+ + G   ++G +G  GPV    GL G+ G+   ++    + G  GP+
Sbjct: 828 GYAGEPGPEGLKGEVGDQGNIGKIGETGPV----GLPGEVGMTG-SIGEKGERGSPGPL 881



 Score = 33.5 bits (75), Expect = 1.1
 Identities = 49/155 (31%), Positives = 64/155 (41%), Gaps = 19/155 (12%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMP-MGSLEH 359
            PGQ G   + G   Q       GS   PG+ G   ++GP G+ G    V  +  MG    
Sbjct: 1109 PGQRGRPGKKGDKGQIGPTGEVGSRGPPGKIG---KSGPKGARGTRGAVGHLGLMGPDGE 1165

Query: 360  EGLVSLRPVGLQEQEGPMSL-GPVGSAG-PVETS-----KGLLGQEGLV--EIAMDSPEQ 410
             G+   R  G Q Q GP  L GP G  G P E S      G  G+ G V  +     P  
Sbjct: 1166 PGIPGYR--GHQGQPGPSGLPGPKGEKGYPGEDSTVLGPPGPRGEPGPVGDQGERGEPGA 1223

Query: 411  EGLVGPMEI--TMGSLEKAGPVSPGCVKLAGQEGL 443
            EG  G + +    G+  + GP  PG     G++GL
Sbjct: 1224 EGYKGHVGVPGLRGATGQQGP--PGEPGDQGEQGL 1256



 Score = 31.6 bits (70), Expect = 4.0
 Identities = 45/147 (30%), Positives = 59/147 (40%), Gaps = 28/147 (19%)

Query: 265  PSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPG---QSGASLRTG--PMVQGRGI 319
            P T+G    +      G + TA    GT   G   EPG   + G   + G   +  GRG+
Sbjct: 1013 PGTEGESGLQGEPGAKGDVGTAGSVGGTGEPGLRGEPGAPGEEGLQGKDGLKGVPGGRGL 1072

Query: 320  MTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSL-----RP--VGLQE 372
               G   E G+ G     GP+G  GQ         G    EG+V +     RP   G + 
Sbjct: 1073 --PGEDGEKGEMGLPGIIGPLGRSGQT--------GLPGPEGIVGIPGQRGRPGKKGDKG 1122

Query: 373  QEGPMSLGPVGSAGPVETSKGLLGQEG 399
            Q GP   G VGS GP     G +G+ G
Sbjct: 1123 QIGP--TGEVGSRGP----PGKIGKSG 1143


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG++G     GP    RG  T G+  +PG +G     GP G++G   Q    P G   + 
Sbjct: 657 PGEAGPRGLLGP----RG--TPGAPGQPGMAGVDGPPGPKGNMG--PQGEPGPPGQQGNP 708

Query: 361 GLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEIT 420
           G     P GL   +GP  +GP G  GP +   GL G  G  +     P +EG  G     
Sbjct: 709 G-----PQGLPGPQGP--IGPPGEKGP-QGKPGLAGLPG-ADGPPGHPGKEGQSG----E 755

Query: 421 MGSLEKAGPVSP 432
            G+L   GP  P
Sbjct: 756 KGALGPPGPQGP 767



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 47/152 (30%), Positives = 59/152 (38%), Gaps = 28/152 (18%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
            G   +PG  G    TGP    RG    G   +PG  GTS   GP G  G  E+    P G
Sbjct: 883  GVAGKPGPRGQRGPTGPR-GSRG--ARGPTGKPGPKGTSGGDGPPGPPG--ERGPQGPQG 937

Query: 356  SLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVG 415
                       PVG    +GP   GP G  G +    G  G+ G  +     P   G+VG
Sbjct: 938  -----------PVGFPGPKGPP--GPPGKDG-LPGHPGQRGETGF-QGKTGPPGPGGVVG 982

Query: 416  PMEITMGSLEKAGPVS----PGCVKLAGQEGL 443
            P     G   + GP+     PG     G++GL
Sbjct: 983  P----QGPTGETGPIGERGHPGPPGPPGEQGL 1010



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 59/224 (26%), Positives = 78/224 (34%), Gaps = 39/224 (17%)

Query: 257  ENTSGGDHP----STQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGP 312
            + TSGGD P      +GP+  +  +   G              G   + G++G   +TGP
Sbjct: 915  KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 974

Query: 313  MVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG----------QAEQVSSMPMGSLEHEGL 362
               G  +   G   E G  G     GP G  G          +  +    P G    +G 
Sbjct: 975  PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP 1034

Query: 363  VSLR-------------PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSP 408
              LR               GL+  EGP    GPVGS G    S G  G  GL       P
Sbjct: 1035 AGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE-RGSAGTAGPIGL----PGRP 1089

Query: 409  EQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEP 452
              +G  GP      + EK  P   G    AG++G+   V L  P
Sbjct: 1090 GPQGPPGP------AGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1127



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 48/149 (32%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM----PMGS 356
            PG  G     GP  Q       G G + G+ G   + GP G  G+A          P G+
Sbjct: 1326 PGDPGPPGEPGPAGQD------GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA 1379

Query: 357  LEHEGLVSLRPV-GLQEQEGPM-SLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLV 414
               EG    +   G    EGP    GPVG  GP     G  G EGL  I     EQ GL 
Sbjct: 1380 AGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPA----GKPGPEGLRGIPGPVGEQ-GLP 1434

Query: 415  GPMEITMGSLEKAGPVS-PGCVKLAGQEG 442
            G      G     GP+  PG   L G  G
Sbjct: 1435 G----AAGQDGPPGPMGPPGLPGLKGDPG 1459



 Score = 31.6 bits (70), Expect = 4.0
 Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 328  PGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP 387
            PG+ G +   GPMG  G        P G    +G     P G    +GP   G VGS G 
Sbjct: 1218 PGEKGENGDVGPMGPPG--------PPGPRGPQG-----PNGADGPQGPP--GSVGSVGG 1262

Query: 388  VETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
            V    G  G+ G  E     P  E  VG  +   G   +AGP  PG     G +G
Sbjct: 1263 V----GEKGEPG--EAGNPGPPGEAGVGGPKGERGEKGEAGP--PGAAGPPGAKG 1309



 Score = 31.2 bits (69), Expect = 5.2
 Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGT---SLRTGPMGSLGQAEQVSSM 352
           G+   PGQ G +   GP      +   G    PGQ G        GP G +G   +    
Sbjct: 670 GTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKG-- 727

Query: 353 PMGSLEHEGLVSL-RPVGLQEQEG----------PMSLGPVGSAGP-----------VET 390
           P G     GL     P G   +EG          P   GP+G  GP           ++ 
Sbjct: 728 PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKG 787

Query: 391 SKGLLGQEGLVEIAMD-----SPEQEGLVGPM--EITMGSLEKAGPV-SPGCVKLAGQEG 442
           SKG  G++G      D        + G +GP   +   G   +AGP   PG    AG++G
Sbjct: 788 SKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 847



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 51/197 (25%), Positives = 71/197 (36%), Gaps = 41/197 (20%)

Query: 261 GGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGPMVQGRGIM 320
           G   P+     A   A+L+   +  AL+G           PG  G + R GP+       
Sbjct: 515 GSKGPTISAQEAQAQAILQQARI--ALRGP----------PGPMGLTGRPGPVGGPGSSG 562

Query: 321 TTGSGQEPGQSGTSLRTGPMGSLGQ--------AEQVSSMP-----MGSLEHEGLVSL-R 366
             G   +PG  G     GP G  G+        A+    MP      G    +GL  L  
Sbjct: 563 AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 622

Query: 367 PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLE 425
             G + + GP    GP G  G +    G +G  GL   A       GL+GP         
Sbjct: 623 DKGHRGERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEA----GPRGLLGP--------- 668

Query: 426 KAGPVSPGCVKLAGQEG 442
           +  P +PG   +AG +G
Sbjct: 669 RGTPGAPGQPGMAGVDG 685


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG++G     GP    RG  T G+  +PG +G     GP G++G   Q    P G   + 
Sbjct: 606 PGEAGPRGLLGP----RG--TPGAPGQPGMAGVDGPPGPKGNMG--PQGEPGPPGQQGNP 657

Query: 361 GLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEIT 420
           G     P GL   +GP  +GP G  GP +   GL G  G  +     P +EG  G     
Sbjct: 658 G-----PQGLPGPQGP--IGPPGEKGP-QGKPGLAGLPG-ADGPPGHPGKEGQSG----E 704

Query: 421 MGSLEKAGPVSP 432
            G+L   GP  P
Sbjct: 705 KGALGPPGPQGP 716



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 47/152 (30%), Positives = 59/152 (38%), Gaps = 28/152 (18%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
           G   +PG  G    TGP    RG    G   +PG  GTS   GP G  G  E+    P G
Sbjct: 832 GVAGKPGPRGQRGPTGPR-GSRG--ARGPTGKPGPKGTSGGDGPPGPPG--ERGPQGPQG 886

Query: 356 SLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVG 415
                      PVG    +GP   GP G  G +    G  G+ G  +     P   G+VG
Sbjct: 887 -----------PVGFPGPKGPP--GPPGKDG-LPGHPGQRGETGF-QGKTGPPGPGGVVG 931

Query: 416 PMEITMGSLEKAGPVS----PGCVKLAGQEGL 443
           P     G   + GP+     PG     G++GL
Sbjct: 932 P----QGPTGETGPIGERGHPGPPGPPGEQGL 959



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 59/224 (26%), Positives = 78/224 (34%), Gaps = 39/224 (17%)

Query: 257  ENTSGGDHP----STQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGP 312
            + TSGGD P      +GP+  +  +   G              G   + G++G   +TGP
Sbjct: 864  KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 923

Query: 313  MVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG----------QAEQVSSMPMGSLEHEGL 362
               G  +   G   E G  G     GP G  G          +  +    P G    +G 
Sbjct: 924  PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP 983

Query: 363  VSLR-------------PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSP 408
              LR               GL+  EGP    GPVGS G    S G  G  GL       P
Sbjct: 984  AGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE-RGSAGTAGPIGL----PGRP 1038

Query: 409  EQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEP 452
              +G  GP      + EK  P   G    AG++G+   V L  P
Sbjct: 1039 GPQGPPGP------AGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1076



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 48/149 (32%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM----PMGS 356
            PG  G     GP  Q       G G + G+ G   + GP G  G+A          P G+
Sbjct: 1275 PGDPGPPGEPGPAGQD------GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA 1328

Query: 357  LEHEGLVSLRPV-GLQEQEGPM-SLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLV 414
               EG    +   G    EGP    GPVG  GP     G  G EGL  I     EQ GL 
Sbjct: 1329 AGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPA----GKPGPEGLRGIPGPVGEQ-GLP 1383

Query: 415  GPMEITMGSLEKAGPVS-PGCVKLAGQEG 442
            G      G     GP+  PG   L G  G
Sbjct: 1384 G----AAGQDGPPGPMGPPGLPGLKGDPG 1408



 Score = 31.6 bits (70), Expect = 4.0
 Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 328  PGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP 387
            PG+ G +   GPMG  G        P G    +G     P G    +GP   G VGS G 
Sbjct: 1167 PGEKGENGDVGPMGPPG--------PPGPRGPQG-----PNGADGPQGPP--GSVGSVGG 1211

Query: 388  VETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
            V    G  G+ G  E     P  E  VG  +   G   +AGP  PG     G +G
Sbjct: 1212 V----GEKGEPG--EAGNPGPPGEAGVGGPKGERGEKGEAGP--PGAAGPPGAKG 1258



 Score = 31.2 bits (69), Expect = 5.2
 Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGT---SLRTGPMGSLGQAEQVSSM 352
           G+   PGQ G +   GP      +   G    PGQ G        GP G +G   +    
Sbjct: 619 GTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKG-- 676

Query: 353 PMGSLEHEGLVSL-RPVGLQEQEG----------PMSLGPVGSAGP-----------VET 390
           P G     GL     P G   +EG          P   GP+G  GP           ++ 
Sbjct: 677 PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKG 736

Query: 391 SKGLLGQEGLVEIAMD-----SPEQEGLVGPM--EITMGSLEKAGPV-SPGCVKLAGQEG 442
           SKG  G++G      D        + G +GP   +   G   +AGP   PG    AG++G
Sbjct: 737 SKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 796



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 51/197 (25%), Positives = 71/197 (36%), Gaps = 41/197 (20%)

Query: 261 GGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGPMVQGRGIM 320
           G   P+     A   A+L+   +  AL+G           PG  G + R GP+       
Sbjct: 464 GSKGPTISAQEAQAQAILQQARI--ALRGP----------PGPMGLTGRPGPVGGPGSSG 511

Query: 321 TTGSGQEPGQSGTSLRTGPMGSLGQ--------AEQVSSMP-----MGSLEHEGLVSL-R 366
             G   +PG  G     GP G  G+        A+    MP      G    +GL  L  
Sbjct: 512 AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 571

Query: 367 PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLE 425
             G + + GP    GP G  G +    G +G  GL   A       GL+GP         
Sbjct: 572 DKGHRGERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEA----GPRGLLGP--------- 617

Query: 426 KAGPVSPGCVKLAGQEG 442
           +  P +PG   +AG +G
Sbjct: 618 RGTPGAPGQPGMAGVDG 634


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG++G     GP    RG  T G+  +PG +G     GP G++G   Q    P G   + 
Sbjct: 645 PGEAGPRGLLGP----RG--TPGAPGQPGMAGVDGPPGPKGNMG--PQGEPGPPGQQGNP 696

Query: 361 GLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEIT 420
           G     P GL   +GP  +GP G  GP +   GL G  G  +     P +EG  G     
Sbjct: 697 G-----PQGLPGPQGP--IGPPGEKGP-QGKPGLAGLPG-ADGPPGHPGKEGQSG----E 743

Query: 421 MGSLEKAGPVSP 432
            G+L   GP  P
Sbjct: 744 KGALGPPGPQGP 755



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 47/152 (30%), Positives = 59/152 (38%), Gaps = 28/152 (18%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
           G   +PG  G    TGP    RG    G   +PG  GTS   GP G  G  E+    P G
Sbjct: 871 GVAGKPGPRGQRGPTGPR-GSRG--ARGPTGKPGPKGTSGGDGPPGPPG--ERGPQGPQG 925

Query: 356 SLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVG 415
                      PVG    +GP   GP G  G +    G  G+ G  +     P   G+VG
Sbjct: 926 -----------PVGFPGPKGPP--GPPGKDG-LPGHPGQRGETGF-QGKTGPPGPGGVVG 970

Query: 416 PMEITMGSLEKAGPVS----PGCVKLAGQEGL 443
           P     G   + GP+     PG     G++GL
Sbjct: 971 P----QGPTGETGPIGERGHPGPPGPPGEQGL 998



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 59/224 (26%), Positives = 78/224 (34%), Gaps = 39/224 (17%)

Query: 257  ENTSGGDHP----STQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGP 312
            + TSGGD P      +GP+  +  +   G              G   + G++G   +TGP
Sbjct: 903  KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP 962

Query: 313  MVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG----------QAEQVSSMPMGSLEHEGL 362
               G  +   G   E G  G     GP G  G          +  +    P G    +G 
Sbjct: 963  PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP 1022

Query: 363  VSLR-------------PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSP 408
              LR               GL+  EGP    GPVGS G    S G  G  GL       P
Sbjct: 1023 AGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE-RGSAGTAGPIGL----PGRP 1077

Query: 409  EQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEP 452
              +G  GP      + EK  P   G    AG++G+   V L  P
Sbjct: 1078 GPQGPPGP------AGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1115



 Score = 33.9 bits (76), Expect = 0.81
 Identities = 48/149 (32%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 301  PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM----PMGS 356
            PG  G     GP  Q       G G + G+ G   + GP G  G+A          P G+
Sbjct: 1314 PGDPGPPGEPGPAGQD------GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA 1367

Query: 357  LEHEGLVSLRPV-GLQEQEGPM-SLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLV 414
               EG    +   G    EGP    GPVG  GP     G  G EGL  I     EQ GL 
Sbjct: 1368 AGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPA----GKPGPEGLRGIPGPVGEQ-GLP 1422

Query: 415  GPMEITMGSLEKAGPVS-PGCVKLAGQEG 442
            G      G     GP+  PG   L G  G
Sbjct: 1423 G----AAGQDGPPGPMGPPGLPGLKGDPG 1447



 Score = 31.6 bits (70), Expect = 4.0
 Identities = 37/115 (32%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 328  PGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGP 387
            PG+ G +   GPMG  G        P G    +G     P G    +GP   G VGS G 
Sbjct: 1206 PGEKGENGDVGPMGPPG--------PPGPRGPQG-----PNGADGPQGPP--GSVGSVGG 1250

Query: 388  VETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
            V    G  G+ G  E     P  E  VG  +   G   +AGP  PG     G +G
Sbjct: 1251 V----GEKGEPG--EAGNPGPPGEAGVGGPKGERGEKGEAGP--PGAAGPPGAKG 1297



 Score = 31.2 bits (69), Expect = 5.2
 Identities = 48/180 (26%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGT---SLRTGPMGSLGQAEQVSSM 352
           G+   PGQ G +   GP      +   G    PGQ G        GP G +G   +    
Sbjct: 658 GTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKG-- 715

Query: 353 PMGSLEHEGLVSL-RPVGLQEQEG----------PMSLGPVGSAGP-----------VET 390
           P G     GL     P G   +EG          P   GP+G  GP           ++ 
Sbjct: 716 PQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKG 775

Query: 391 SKGLLGQEGLVEIAMD-----SPEQEGLVGPM--EITMGSLEKAGPV-SPGCVKLAGQEG 442
           SKG  G++G      D        + G +GP   +   G   +AGP   PG    AG++G
Sbjct: 776 SKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKG 835



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 51/197 (25%), Positives = 71/197 (36%), Gaps = 41/197 (20%)

Query: 261 GGDHPSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGPMVQGRGIM 320
           G   P+     A   A+L+   +  AL+G           PG  G + R GP+       
Sbjct: 503 GSKGPTISAQEAQAQAILQQARI--ALRGP----------PGPMGLTGRPGPVGGPGSSG 550

Query: 321 TTGSGQEPGQSGTSLRTGPMGSLGQ--------AEQVSSMP-----MGSLEHEGLVSL-R 366
             G   +PG  G     GP G  G+        A+    MP      G    +GL  L  
Sbjct: 551 AKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 610

Query: 367 PVGLQEQEGPMS-LGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPMEITMGSLE 425
             G + + GP    GP G  G +    G +G  GL   A       GL+GP         
Sbjct: 611 DKGHRGERGPQGPPGPPGDDG-MRGEDGEIGPRGLPGEA----GPRGLLGP--------- 656

Query: 426 KAGPVSPGCVKLAGQEG 442
           +  P +PG   +AG +G
Sbjct: 657 RGTPGAPGQPGMAGVDG 673


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 47/158 (29%), Positives = 60/158 (37%), Gaps = 30/158 (18%)

Query: 300 EPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSM-PMGSLE 358
           EPG  G   R GP  QG      G    PG  G  + TGP+G  G+     +  P G   
Sbjct: 306 EPGYPGLIGRQGP--QGE----KGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPG 359

Query: 359 HEGLVSLRPVGLQEQEGPMSLGPVGSAGP--VETSKGLLGQEGLVEIAMDSPE-QEGLVG 415
            +G       GL  Q GP  L   G AG       +G  G  G    ++  P  ++GL G
Sbjct: 360 PKGF-----PGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPG 414

Query: 416 PMEITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPG 453
           P            P SPG     GQ G    ++  +PG
Sbjct: 415 P------------PGSPG---PPGQPGYTNGIVECQPG 437



 Score = 36.2 bits (82), Expect = 0.16
 Identities = 44/161 (27%), Positives = 58/161 (36%), Gaps = 24/161 (14%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG-QAEQVSSMPMGSLEH 359
           PGQ G + R G   +       G    PG  G     GP G +G    +  + P G    
Sbjct: 549 PGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGP--- 605

Query: 360 EGLVSLRPVGLQEQEG-------PMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEG 412
            G     P+G + Q G       P   GP G  G +    G  G EGL       P   G
Sbjct: 606 PGYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGL-------PGSPG 658

Query: 413 LVGPMEITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPG 453
             GP        ++  P +PG   L G++G V    +  PG
Sbjct: 659 FPGPQG------DRGFPGTPGRPGLPGEKGAVGQPGIGFPG 693


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 55/192 (28%), Positives = 76/192 (39%), Gaps = 28/192 (14%)

Query: 265  PSTQGPRATKHALLRTGGLVTALQGAGTVTMGSGEEPGQSGASLRTGPM-------VQG- 316
            P   GP+ +       GG+ T  +       GS   PG  GA  R GP         QG 
Sbjct: 1020 PGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGS 1079

Query: 317  RGIM----TTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPVGLQE 372
            RG+       G    PGQ G +   G +GS G        P G    +GL      G Q 
Sbjct: 1080 RGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPG--PSGPPGTKGLPG--EPGPQG 1135

Query: 373  QEGPMSLGPVGSAGPVETSKGLLGQEGLVEIA--------MDSPEQEGLVGPMEITMGSL 424
             +GP  +GP G  GP +   G +G+ GL   A        + +P ++GL+G      G  
Sbjct: 1136 PQGP--IGPPGEMGP-KGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIG-QRGEPGLE 1191

Query: 425  EKAGPVSPGCVK 436
              +GP+ P  +K
Sbjct: 1192 GDSGPMGPDGLK 1203



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 22/148 (14%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
            G   E G++GA    G   QG+ +   G   +PG  GT    G  GSLG         MG
Sbjct: 1246 GKQGEKGRTGAKGAKG--YQGQ-LGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGR--MG 1300

Query: 356  SLEHEGLVSLRPVGLQEQEGPMSLGPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVG 415
            +    GL      G    +G   +GP+G  GP +  KG  G++G  E     P   G VG
Sbjct: 1301 AQGEPGL-----AGYDGHKG--IVGPLGPPGP-KGEKGEQGEDGKAEGPPGPPGDRGPVG 1352

Query: 416  PMEITMGSLEKAGPVSPGCVKLAGQEGL 443
                     ++     PG     GQEG+
Sbjct: 1353 ---------DRGDRGEPGDPGYPGQEGV 1371



 Score = 33.1 bits (74), Expect = 1.4
 Identities = 47/154 (30%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
            GS   PG  GA  + GP+ +     + G    PG  G     GP G  G  E +   P  
Sbjct: 874  GSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNG-PEGMKGKPGA 932

Query: 356  SLEHEGLVSLR-PVGLQEQEGPMSLGPVGSAG--PVETSKGLLGQEGLVEIAMDSPEQEG 412
                 GL   R  +G +  EGPM  GP G+ G       KG  G+ GL +     P   G
Sbjct: 933  ----RGLPGPRGQLGPEGDEGPM--GPPGAPGLEGQPGRKGFPGRPGL-DGVKGEPGDPG 985

Query: 413  LVGPM--EITMGSLEKAGPVSPGCVKLAGQEGLV 444
              GP+  +  MG +   G   PG V   G  G++
Sbjct: 986  RPGPVGEQGFMGFIGLVG--EPGIVGEKGDRGMM 1017



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 39/123 (31%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 296  GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
            G    PG +G     GP          G    PG+ GT  RTG  G+  Q E  S    G
Sbjct: 1472 GKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGN--QGEPGSKGQPG 1529

Query: 356  SLEHEGLVSLRPVGLQEQEGPM-SLGPVGSAGPVETSKGLLGQEGLV-EIAMDSPEQEGL 413
                 G   +   GL   +GP   +G  G  GP     GL+G+EG+V  + +  P   GL
Sbjct: 1530 DSGEMGFPGM--AGLFGPKGPPGDIGFKGIQGP-RGPPGLMGKEGIVGPLGILGP--SGL 1584

Query: 414  VGP 416
             GP
Sbjct: 1585 PGP 1587



 Score = 30.4 bits (67), Expect = 8.9
 Identities = 44/146 (30%), Positives = 54/146 (36%), Gaps = 11/146 (7%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHE 360
           PG  GA  + G      G    G+  + G  G S   GP G  G        P G    +
Sbjct: 666 PGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPG--PAGHPGEQ 723

Query: 361 GLVSLR-PVGLQEQEGPMSL-GPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLVGPME 418
           G        G +   G   L GPVG  GP + S+G +G  GL  +   S  + GL G   
Sbjct: 724 GQPGPEGSPGAKGYPGRQGLPGPVGDPGP-KGSRGYIGLPGLFGLP-GSDGERGLPG--- 778

Query: 419 ITMGSLEKAG-PVSPGCVKLAGQEGL 443
              G   K G P  PG     G  GL
Sbjct: 779 -VPGKRGKMGMPGFPGVFGERGPPGL 803


>gi|13376842 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
            polymerase 2 [Homo sapiens]
          Length = 1166

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 32/205 (15%)

Query: 823  LAENTGEFQEVVRAFYDTLDAARSS---------IRVVRVERVSHPLLQQQYELYRERLL 873
            L+ +  EFQ V      T+   R             ++++++V +  L ++Y   R+ + 
Sbjct: 958  LSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVS 1017

Query: 874  QRCERRPVEQVLYHGTTAPAVPDICAHGFNRSFCGRNATV---YGKGVYFARRASLSVQD 930
            +       E++L+HG+  P V  I   GF+     R+A +   +G G+YFA  +S S Q 
Sbjct: 1018 EENHNHANERMLFHGS--PFVNAIIHKGFDE----RHAYIGGMFGAGIYFAENSSKSNQY 1071

Query: 931  RYSPPNADG------------HKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSA 978
             Y      G            H+ +   RV  G        ++      PGH  +    +
Sbjct: 1072 VYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAH-SPPGHHSVTGRPS 1130

Query: 979  VDCICQPSIFVIFHDTQALPTHLIT 1003
            V+ +     +VI+   QA P +LIT
Sbjct: 1131 VNGLALAE-YVIYRGEQAYPEYLIT 1154


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 29/157 (18%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG-QAEQVSSMPMGSLEH 359
           PG  G     GP  +       G   EPG  GT    GP G+ G + EQ  ++    +++
Sbjct: 255 PGPKGEPGSMGPRGENGVDGAPGPKGEPGHRGTDGAAGPRGAPGLKGEQGDTV---VIDY 311

Query: 360 EGLVSLRPVGLQEQEGPMSLGPVGSAGP--VETSKGLLGQEGLVEIAMDSPEQEGLVGPM 417
           +G +      L   +GP   GP G  GP  +  +KG LG  G       +P  +G  GP 
Sbjct: 312 DGRI------LDALKGPP--GPQGPPGPPGIPGAKGELGLPG-------APGIDGEKGPK 356

Query: 418 EITMGSLEKAGPVSPGCVKLAGQEGLVEMVLLMEPGA 454
                  +K  P  PG   L G+ G  EM L   PGA
Sbjct: 357 G------QKGDPGEPGPAGLKGEAG--EMGLSGLPGA 385



 Score = 30.8 bits (68), Expect = 6.8
 Identities = 45/156 (28%), Positives = 54/156 (34%), Gaps = 44/156 (28%)

Query: 301 PGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLG----------QAEQVS 350
           PG  G     GP  Q       G   EPG +G     G MG  G          + E  S
Sbjct: 344 PGAPGIDGEKGPKGQ------KGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESAS 397

Query: 351 SMPMGSLEHEGLVSLRPVGLQEQEGPMSL----GPVGSAGPVETSKGLLGQEGLVEIAMD 406
                SL  + +V   P G     GPM L    GP G  G  +  KG  G+ G       
Sbjct: 398 DSLQESLA-QLIVEPGPPGPPGPPGPMGLQGIQGPKGLDG-AKGEKGASGERG------- 448

Query: 407 SPEQEGLVGPMEITMGSLEKAGPVSPGCVKLAGQEG 442
                GL GP+          GP  PG + L G +G
Sbjct: 449 ---PSGLPGPV----------GP--PGLIGLPGTKG 469



 Score = 30.4 bits (67), Expect = 8.9
 Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 323 GSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMGSLEHEGLVSLRPVGLQEQEG----PMS 378
           G    PGQSG     GP+G  G+      +P    E        P G Q Q+G    P  
Sbjct: 133 GDPGPPGQSGRDGYPGPLGLDGK----PGLPGPKGEKGAPGDFGPRGDQGQDGAAGPPGP 188

Query: 379 LGPVGSAGPV-ETSK-GLLGQEGLVEIAMDSPEQEGLVGP 416
            GP G+ GP  +T K G  G +G        P Q+G +GP
Sbjct: 189 PGPPGARGPPGDTGKDGPRGAQGPAG-PKGEPGQDGEMGP 227


>gi|61699226 pulmonary surfactant-associated protein D precursor
           [Homo sapiens]
          Length = 375

 Score = 40.0 bits (92), Expect = 0.011
 Identities = 45/148 (30%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 296 GSGEEPGQSGASLRTGPMVQGRGIMTTGSGQEPGQSGTSLRTGPMGSLGQAEQVSSMPMG 355
           G   +PG  GA+ + G   Q   +   G     G+ G    TGP G  G       +P G
Sbjct: 61  GEKGDPGLPGAAGQAGMPGQAGPVGPKGDNGSVGEPGPKGDTGPSGPPGP----PGVP-G 115

Query: 356 SLEHEGLVSLRPVGLQEQEGPMSL-GPVGSAGPVETSKGLLGQEGLVEIAMDSPEQEGLV 414
               EG     P+G Q   GP    GP G AGP    KG +G  G+      S    GL 
Sbjct: 116 PAGREG-----PLGKQGNIGPQGKPGPKGEAGP----KGEVGAPGM----QGSAGARGLA 162

Query: 415 GPMEITMGSLEKAGPVSPGCVKLAGQEG 442
           GP        E+  P + G    AG  G
Sbjct: 163 GPKGERGVPGERGVPGNTGAAGSAGAMG 190


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,905,370
Number of Sequences: 37866
Number of extensions: 2474730
Number of successful extensions: 11190
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 278
Number of HSP's that attempted gapping in prelim test: 9840
Number of HSP's gapped (non-prelim): 1180
length of query: 1025
length of database: 18,247,518
effective HSP length: 112
effective length of query: 913
effective length of database: 14,006,526
effective search space: 12787958238
effective search space used: 12787958238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.