Guide to the Human Genome
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Name: C16orf93 Sequence: fasta or formatted (294aa) NCBI GI: 62510076
Description:

hypothetical protein LOC90835

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         17           2
 C cysteine            3.1          9           1
 D aspartate           2.4          7           1
 E glutamate          11.6         34           4
 F phenylalanine       5.1         15           2
 G glycine             4.1         12           1
 H histidine           3.1          9           1
 I isoleucine          2.7          8           1
 K lysine              5.8         17           1
 L leucine            13.6         40           2
 M methionine          2.0          6           1
 N asparagine          1.4          4           1
 P proline             7.8         23           2
 Q glutamine           5.8         17           2
 R arginine            5.4         16           2
 S serine              6.1         18           2
 T threonine           5.1         15           2
 V valine              4.8         14           2
 W tryptophan          0.7          2           1
 Y tyrosine            3.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90835 
C8orf74               0.047   hypothetical protein LOC203076 
PARP10                0.033   poly (ADP-ribose) polymerase family, member 10 [Hom...
FLJ20674              0.021   hypothetical protein FLJ20674 
TNNT3                 0.019   troponin T3, skeletal, fast isoform 3 
TNNT3                 0.019   troponin T3, skeletal, fast isoform 4 
PRRT2                 0.019   proline-rich transmembrane protein 2 
TNNT2                 0.019   troponin T type 2, cardiac isoform 4 
TNNT2                 0.019   troponin T type 2, cardiac isoform 3 
TNNT2                 0.019   troponin T type 2, cardiac isoform 2 
TNNT2                 0.019   troponin T type 2, cardiac isoform 1 
PCNT                  0.017   pericentrin 
CHIC1                 0.017   cysteine-rich hydrophobic domain 1 
PRKCSH                0.016   protein kinase C substrate 80K-H isoform 1 
RBM25                 0.016   RNA binding motif protein 25 
TNNT3                 0.016   troponin T3, skeletal, fast isoform 2 
PRKCSH                0.016   protein kinase C substrate 80K-H isoform 2 
ZNF853                0.014   zinc finger protein 853 
RP1L1                 0.014   retinitis pigmentosa 1-like 1 
CASC1                 0.014   cancer susceptibility candidate 1 isoform b 
CASC1                 0.014   cancer susceptibility candidate 1 isoform c 
CASC1                 0.014   cancer susceptibility candidate 1 isoform a 
TNNT3                 0.014   troponin T3, skeletal, fast isoform 1 
MYO10                 0.014   myosin X 
ANKS1B                0.014   cajalin 2 isoform a 
ANKS1B                0.014   cajalin 2 isoform c 
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
HAP1                  0.014   huntingtin-associated protein 1 isoform 4 
HAP1                  0.014   huntingtin-associated protein 1 isoform 3 
HAP1                  0.014   huntingtin-associated protein 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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