Guide to the Human Genome
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Name: TIPARP Sequence: fasta or formatted (657aa) NCBI GI: 38524594
Description:

TCDD-inducible poly(ADP-ribose) polymerase

Referenced in:

polyADP-Ribose Polymerase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7         18           1
 C cysteine            2.3         15           1
 D aspartate           5.8         38           2
 E glutamate           6.5         43           2
 F phenylalanine       6.1         40           2
 G glycine             4.3         28           2
 H histidine           3.7         24           2
 I isoleucine          5.2         34           2
 K lysine              5.2         34           3
 L leucine             7.0         46           2
 M methionine          3.0         20           2
 N asparagine          4.9         32           2
 P proline             6.8         45           3
 Q glutamine           5.0         33           1
 R arginine            5.6         37           2
 S serine              8.5         56           3
 T threonine           6.1         40           3
 V valine              6.1         40           2
 W tryptophan          1.2          8           1
 Y tyrosine            4.0         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TCDD-inducible poly(ADP-ribose) polymerase 
PARP12                0.131   poly ADP-ribose polymerase 12 
PARP15                0.085   poly (ADP-ribose) polymerase family, member 15 isofo...
PARP15                0.085   poly (ADP-ribose) polymerase family, member 15 isof...
PARP11                0.084   poly (ADP-ribose) polymerase family, member 11 [Hom...
ZC3HAV1               0.082   zinc finger antiviral protein isoform 1 
PARP14                0.079   poly (ADP-ribose) polymerase family, member 14 [Hom...
PARP10                0.064   poly (ADP-ribose) polymerase family, member 10 [Hom...
PARP9                 0.033   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.033   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.033   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.033   poly (ADP-ribose) polymerase family, member 9 isofo...
PARP9                 0.033   poly (ADP-ribose) polymerase family, member 9 isofo...
TNKS2                 0.024   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS                  0.018   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ZC3HAV1               0.018   zinc finger antiviral protein isoform 2 
DHX57                 0.007   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
ZC3H3                 0.007   zinc finger CCCH-type containing 3 
ZC3H6                 0.006   zinc finger CCCH-type domain containing 6 
PARP1                 0.005   poly (ADP-ribose) polymerase family, member 1 [Homo...
LARP1                 0.005   la related protein isoform 2 
LARP1                 0.005   la related protein isoform 1 
PARP2                 0.005   poly (ADP-ribose) polymerase family, member 2 isofo...
PARP2                 0.005   poly (ADP-ribose) polymerase family, member 2 isofo...
FSCB                  0.005   fibrous sheath CABYR binding protein 
PARD6B                0.004   PAR-6 beta 
LARP1B                0.004   La ribonucleoprotein domain family member 2 isoform ...
HEMGN                 0.004   hemogen 
HEMGN                 0.004   hemogen 
ARGFX                 0.004   arginine-fifty homeobox 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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