Guide to the Human Genome
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Name: PVR Sequence: fasta or formatted (364aa) NCBI GI: 209413730
Description:

poliovirus receptor isoform gamma

Referenced in:

Additional Immunoglobulin-related Receptors
Viral Receptors

Other entries for this name:
alt prot [417aa] poliovirus receptor isoform alpha
alt prot [372aa] poliovirus receptor isoform beta
alt prot [392aa] poliovirus receptor isoform delta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         29           3
 C cysteine            1.6          6           1
 D aspartate           2.7         10           1
 E glutamate           5.2         19           1
 F phenylalanine       2.5          9           1
 G glycine             7.7         28           2
 H histidine           1.9          7           1
 I isoleucine          1.9          7           1
 K lysine              2.2          8           1
 L leucine             9.3         34           3
 M methionine          2.2          8           1
 N asparagine          4.7         17           2
 P proline             8.0         29           3
 Q glutamine           5.8         21           1
 R arginine            4.4         16           1
 S serine              8.5         31           3
 T threonine           8.5         31           2
 V valine             10.2         37           3
 W tryptophan          2.2          8           1
 Y tyrosine            2.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poliovirus receptor isoform gamma 
PVR                   0.989   poliovirus receptor isoform beta 
PVR                   0.962   poliovirus receptor isoform alpha 
PVR                   0.911   poliovirus receptor isoform delta 
PVRL2                 0.432   poliovirus receptor related 2 isoform alpha precursor...
PVRL2                 0.430   poliovirus receptor related 2 isoform delta precurs...
PVRL1                 0.208   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.208   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.208   poliovirus receptor-related 1 isoform 1 
PVRL3                 0.166   poliovirus receptor-related 3 
PVRL4                 0.138   poliovirus receptor-related 4 
CADM1                 0.081   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM3                 0.081   cell adhesion molecule 3 isoform 2 
CADM1                 0.079   immunoglobulin superfamily, member 4D isoform 1 [Ho...
CADM3                 0.078   cell adhesion molecule 3 isoform 1 
CADM2                 0.070   immunoglobulin superfamily, member 4D 
KIRREL2               0.061   kin of IRRE-like 2 isoform c 
KIRREL2               0.061   kin of IRRE-like 2 isoform a 
KIRREL2               0.056   kin of IRRE-like 2 isoform b 
CADM4                 0.053   cell adhesion molecule 4 
TAPBPL                0.050   TAP binding protein-like 
BTN1A1                0.049   butyrophilin, subfamily 1, member A1 
DSCAM                 0.043   Down syndrome cell adhesion molecule isoform CHD2-42...
KIRREL                0.043   kin of IRRE like 
HSPG2                 0.042   heparan sulfate proteoglycan 2 
CD200                 0.040   CD200 antigen isoform b 
CD200                 0.040   CD200 antigen isoform a precursor 
KIRREL3               0.038   kin of IRRE like 3 isoform 2 
KIRREL3               0.038   kin of IRRE like 3 isoform 1 
CD276                 0.036   CD276 antigen isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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